BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493816 Length=675 Score E Sequences producing significant alignments: (Bits) Value AT5G41700.4 | Symbols: UBC8, ATUBC8 | ubiquitin conjugating enz... 1075 0.0 AT1G64230.4 | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 ... 451 3e-126 AT5G53300.1 | Symbols: UBC10 | ubiquitin-conjugating enzyme 10 ... 420 1e-116 > AT5G41700.4 | Symbols: UBC8, ATUBC8 | ubiquitin conjugating enzyme 8 | chr5:16675842-16677509 FORWARD LENGTH=803 Length=803 Score = 1075 bits (582), Expect = 0.0 Identities = 646/677 (95%), Gaps = 3/677 (0%) Strand=Plus/Plus Query 1 ATCTGCAGGAGTGAATCACAGAACCGAATTTGGAGGATTCTTTCTGAGGGATTTTTCAGT 60 ||||||||||||||||| || |||| |||||||||||||||||||||||| ||| ||||| Sbjct 2 ATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGGGGTTTCTCAGT 61 Query 61 GAGAAAATGGCGTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCA 120 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 GAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCA 121 Query 121 ACCTCCTGCATTTTTGTAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATA 180 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 122 ACCTCCTGCATTTTTGCAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATT 181 Query 181 ATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 ATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCT 241 Query 241 CCTGACTACCCATTCAAACCTCCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAAT 300 || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 242 CCGGACTATCCATTCAAACCACCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAAT 301 Query 301 ATCAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCCGCTCTC 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 302 ATCAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTC 361 Query 361 ACCATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGAC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 ACCATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGAC 421 Query 421 CCGTTGGTGCCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAGTACGAGGCCACT 480 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 422 CCTTTGGTACCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAATACGAGGCTACT 481 Query 481 GCAAGAAACTGGACTCAGAAGTATGCCATGGGCTAAACAAAGATTCGTATGCTTCAGCAC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 GCAAGAAACTGGACTCAGAAGTATGCCATGGGCTAAACAAAGATTCGTATGCTTCAGCAC 541 Query 541 CTGTTTATGCTCTCATATCTGTTTGTTTCTTCTTCCTGTTTTAACTTTAATAAATATGTC 600 ||||||||| | |||| ||||||| |||||||||| |||||||||||||||||| ||||| Sbjct 542 CTGTTTATGTTTTCATGTCTGTTTCTTTCTTCTTCTTGTTTTAACTTTAATAAAAATGTC 601 Query 601 TAAAATATCTACTTTTTTCATCTATACGATAT--GTTTATGGGTTTTATTATCAGCATCT 658 ||||||||| ||||||| | ||| ||| |||| |||||||||||||||||||| ||||| Sbjct 602 TAAAATATCAACTTTTT-CGTCTGTACTATATATGTTTATGGGTTTTATTATCATCATCT 660 Query 659 TTATCTGAAATTTGAAG 675 ||||||||||||||||| Sbjct 661 TTATCTGAAATTTGAAG 677 > AT1G64230.4 | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833563-23835536 FORWARD LENGTH=1019 Length=1019 Score = 451 bits (244), Expect = 3e-126 Identities = 340/387 (88%), Gaps = 4/387 (1%) Strand=Plus/Plus Query 129 CAT-TTTTGTAG-GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGT 186 ||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 314 CATGTTTTGTTGTGCCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGT 373 Query 187 CC-TGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCTCCTGA 245 || | | || ||||| |||||||||||||| |||||||| ||||||||||||||||| || Sbjct 374 CCAT-CTGATAGTCCTTATTCAGGCGGTGTCTTTCTCGTAACCATTCACTTCCCTCCGGA 432 Query 246 CTACCCATTCAAACCTCCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAA 305 || || |||||||| |||||||||||||| ||||| || ||||| ||||||||| |||| Sbjct 433 TTATCCTTTCAAACCACCAAAGGTTGCATTCAGGACAAAAGTGTTCCACCCTAATGTCAA 492 Query 306 CAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCCGCTCTCACCAT 365 |||||| |||||||||||||||||||||||||||||||||||||| || || |||||||| Sbjct 493 CAGCAATGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGTCCTGCACTCACCAT 552 Query 366 TTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCGTT 425 || ||||| ||||| ||||||||||| ||||||| || ||||| |||||||| || || Sbjct 553 ATCGAAGGTTTTGCTTTCGATATGTTCATTGTTAACGGACCCAAACCCAGATGATCCATT 612 Query 426 GGTGCCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAGTACGAGGCCACTGCAAG 485 ||| ||||||||||| ||||||||||||||||| ||||| ||||| ||| | ||||| || Sbjct 613 GGTTCCAGAGATTGCTCACATGTACAAAACCGATAGAGCAAAGTATGAGTCTACTGCGAG 672 Query 486 AAACTGGACTCAGAAGTATGCCATGGG 512 || |||||||||||| ||||| ||||| Sbjct 673 AAGCTGGACTCAGAAATATGCAATGGG 699 > AT5G53300.1 | Symbols: UBC10 | ubiquitin-conjugating enzyme 10 | chr5:21632514-21634229 REVERSE LENGTH=876 Length=876 Score = 420 bits (227), Expect = 1e-116 Identities = 382/456 (84%), Gaps = 13/456 (3%) Strand=Plus/Plus Query 67 ATGGCGTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCT-C 125 ||||||||||| |||||||||||||| |||||||||||||||| || ||| |||| | Sbjct 142 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTCCAGAAGGA---TCC-ACCTAC 197 Query 126 CTGCAT-TTTTGTAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGG 184 | ||| | | |||||| |||||||||||||||||||| ||||| || || ||||||| Sbjct 198 AT-CATGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCAACGATAATGG 256 Query 185 GTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTT-CTCGTTACCATTCACTTCCCTCCT 243 ||||| |||||||||| ||| | || ||||| ||| || || ||||| || |||||||| Sbjct 257 GTCCTTCAGAGAGTCCTTATGCTGGAGGTGT-TTTCCTTGTAACCATCCATTTCCCTCCG 315 Query 244 GACTACCCATTCAAACCTCCAAAGGTTGCATTTAGGACGAAGGTGTTTCA-CCCTAATAT 302 || ||||||||||| ||||| ||||| || |||||||| |||||||| || ||| || || Sbjct 316 GATTACCCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCC-AACAT 374 Query 303 CAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCCGCTCTCAC 362 ||||||||||| ||||||||||| ||||| ||||| || || ||||| || || ||||| Sbjct 375 TAACAGCAACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCAC 434 Query 363 CATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCC 422 ||||||||||||| |||| ||||| ||||| ||||||| |||||||| || ||||| || Sbjct 435 CATTTCCAAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCC 494 Query 423 GTTGGTGCCAGAGATTGCACACATGTACAAAACCGAC-AGAGCCAAGTACGAGGCCACTG 481 |||||||| ||||| || ||||||||||| || ||| ||| |||||||||| |||||| Sbjct 495 TTTGGTGCCCGAGATAGCTCACATGTACAAGACTGACAAGA-ACAAGTACGAGTCCACTG 553 Query 482 CAAGAAACTGGACTCAGAAGTATGCCATGGGCTAAA 517 || ||| ||||||||||||||||||||||||||||| Sbjct 554 CACGAAGCTGGACTCAGAAGTATGCCATGGGCTAAA 589 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32652195550 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5