BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493825
Length=2000
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41620.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 3011 0.0
AT1G64180.1 | Symbols: | intracellular protein transport prote... 398 1e-109
> AT5G41620.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana
protein match is: intracellular protein transport protein
USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16646330-16648968
FORWARD LENGTH=2064
Length=2064
Score = 3011 bits (1630), Expect = 0.0
Identities = 1884/2002 (94%), Gaps = 36/2002 (2%)
Strand=Plus/Plus
Query 1 Atggaaagtaaagtaagaggagaagaagaagagagacagaaagtggaaagattggtggaa 60
|||||||||||||||||| | | ||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGAAAGTAAAGTAAGA-G-G-AGAAGAAGAGAGACAAAAAGTGGAAAGATTGGTGGAA 57
Query 61 aagtT-AA----C-GAATCATATTAATAATCGATCTTCAACTCCGGCGCACATTAGCTTC 114
||||| || | ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 58 AAGTTAAAGGTTCATAATAATAATAATAATCGATCTTCAACTCCGGCGCACATTAGCTTC 117
Query 115 GTCCCTAACTCAATCGTTGTTTCCTCTAGAAAACTCGCTGCTGCTTTCTGGGAGTTTCAT 174
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 118 GTTCCTAACTCAATCGTTGTGTCCTCTAGAAAGCTCGCTGCTGCTTTCTGGGAGTTTCAT 177
Query 175 CAATACCACTAC-----C-AAGAAGATTG------CTCTTACCTCTCCTCTGCTTCTGCT 222
|| ||||||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 178 CAGTACCACTACAAAGACGAAGAAGATTGCTCTTACTCTTACCTCTCCTCTGCTTCTGCT 237
Query 223 AGAATGCACCGTGGGGCGAATGGTTTCGCCGGAGCTAGTAACCGCCGTCAACGTCACGGC 282
| ||||||||| || | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 AAAATGCACCGCGGCCCAAATGGTTTCGCCGGAGCTAGTAGCCGCCGTCAACGTCACGG- 296
Query 283 AAA-GCGGTGGCGGTTAAGGAGAATGGTCTTGACCTTTCCCAATTCCTTCGAGATCCTTC 341
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 AAAGGCGGTTGCGGTTAAGGAGAATGGTCTTGACCTTTCTCAATTCCTTCGAGATCCTTC 356
Query 342 TCCTGATTATCAGCCAGATAGTGCGGGAAGTCTAAGGAGGCAGATTGGTCAAATGTTGAT 401
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 357 TCCTGATCATCAGCCAGATAGTGCGGGAAGTCTAAGGAGACAGATTGGTCAAATGTTGAT 416
Query 402 AAAGCATCATCAATCAATCGAAAGAAACAATCACGCGCTTCAGCCTGTATCTCCTGCTAG 461
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 417 AAAGCATCATCAATCAATCGATAGAAACAATCACGCTCTTCAGCCTGTATCTCCTGCTAG 476
Query 462 TTACGGAAGCTCTCTCGAGGTTACGACATACAACAAAGCGGTAACTCCAAGTAGTTCATT 521
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 477 TTACGGAAGCTCTCTCGAGGTTACGACATACAACAAAGCAGTAACTCCAAGTAGTTCATT 536
Query 522 GGATTTCCGAGGAAGAGCGTCTAGAGAACCTCATTACAATCTCAAGACATCAACCGAACT 581
||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 537 GGAGTTCCGAGGAAGACCGTCTAGAGAACCTCACTACAATCTCAAGACATCAACCGAACT 596
Query 582 TCTTAAAGTATTGAACCGTATTTGGAGCCTTGAGGAGCAGCATGTCTCCAATATCTCTTT 641
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 597 TCTTAAAGTACTGAACCGTATTTGGAGCCTTGAGGAGCAGCATGTCTCCAATATCTCCTT 656
Query 642 GATAAAGGCTTTGAAAACCGAGGTGGCTCATTCTCGTGTTCGAATCAAGGAGCTTCTTAG 701
|||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 657 GATAAAAGCTTTGAAAACCGAGGTGGCTCATTCACGCGTTCGAATCAAGGAGCTTCTTAG 716
Query 702 GTACCAGCAAGCTGATAGACACGAGTTAGACGGTGTGGTGAAGCAACTCGCTGAAGAAAA 761
|||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 717 GTACCAGCAAGCCGATAGACACGAGCTAGACAGTGTGGTGAAGCAACTCGCTGAAGAAAA 776
Query 762 GTTGTTGAGGAAGAATAAGGAAGTTGAGCGGATGAGCTCTGCTGTTCATTCTGTGAGGAA 821
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 777 GTTGTTGAGCAAGAATAAGGAAGTTGAGCGGATGAGCTCTGCTGTTCAGTCCGTGAGGAA 836
Query 822 AGAGTTAGAAGATGAGCGGAAGCTTAGGAAACGTTCTGAGAGTTTGCATAGGAAATTGGC 881
|| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 837 AGCGTTAGAAGATGAGCGGAAACTTAGAAAACGTTCTGAGAGTTTGCATAGGAAAATGGC 896
Query 882 ACGAGAGCTCTCGGAAGTGAAGTCTTCGTTGTCTAACTGTGTTAAGGAGCTTGAGAGAGG 941
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 897 AAGAGAGCTCTCGGAAGTGAAGTCTTCGTTGTCTAACTGTGTCAAGGAGCTTGAGAGAGG 956
Query 942 GGCTAAATCAAATAAGATGATGGAGCTACTCTGCGATGAGTTTGCCAAAGGGATCAAGAG 1001
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GTCTAAATCAAATAAGATGATGGAGCTACTCTGCGATGAGTTTGCCAAAGGGATCAAGAG 1016
Query 1002 TTACGAAGAGGAGATTCACGGTTTAAAGAAGAAGAATCTTGATAAGGATTGGGCGGGTCG 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TTACGAAGAGGAGATTCACGGTTTAAAGAAGAAGAATCTTGATAAGGATTGGGCGGGTCG 1076
Query 1062 AGGTGGAGGAGATCAATTGGTTCTTCATATCGCGGAATCTTGGCTTGACGAAAGGATGCA 1121
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1077 AGGTGGAGGAGATCAGTTGGTTCTTCATATTGCGGAATCTTGGCTTGACGAAAGGATGCA 1136
Query 1122 GATGAGATTAGAAGGTGGAGATACATTGAATGGTAACAACAGATCAGTGTTGGATAAGCT 1181
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1137 GATGAGATTAGAAGGTGGAGATACATTGAATGGTAAGAACAGATCAGTGCTGGATAAGCT 1196
Query 1182 CGAGGTTGAGATCGAGACATTTCTCCAGGAGAAGCGGAATGAAATACCGAGAAACCGCCG 1241
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1197 GGAGGTTGAGATCGAGACATTTCTTCAGGAGAAGCGGAATGAAATACCGAGAAACCGCCG 1256
Query 1242 GAATTCACTTGAATCTGTCCCGTTCAACACCTTGAGTGCACCACCGCGGGATGTAGACTG 1301
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1257 GAATTCACTTGAATCTGTTCCGTTTAACACCTTGAGTGCACCACCGCGGGATGTAGACTG 1316
Query 1302 TGATGAAGACTCTGGAGGAAGCGATTCGAATTGCTTTGAGCTCAAGAAAGCTGCAGAGTC 1361
||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1317 TGAAGAAGACTCTGGAGGAAGCGATTCTAATTGCTTTGAGCTCAAGAAACCTGCAGAGTC 1376
Query 1362 TCATGGAGACGAAACTAAGAAACCAAACCAACTTAACAAAGACAGTTTGATTGATGAAAA 1421
| |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct 1377 TTATGGAGACGAAACTAAGAAACCAAACCAACATAACAAAGACGGTTCGATTGATGAAAA 1436
Query 1422 GGCGAAAAGCCCGTCGAGTTTTCAAGTTAACTTTGAGGATCAAATGGCGTGGGCAATATC 1481
| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 1437 GCCGAAAAGCCCGTCGAGTTTCCAAGTGAACTTTGAGGATCAAATGGCGTGGGCGTTATC 1496
Query 1482 GAGTAACGGAAAGAAGAAAACCGCCCGAGCTATTGAAGACGAAGAAGAAGAAGA---TGT 1538
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1497 GAGTAACGGAAAGAAGAAAACCACCCGAGCTATTGAAGACGAAGAAGAAGAAGAAGATGT 1556
Query 1539 AAAGCCTGAGAATAGCAACAACATTAAGAAACCAGAAGATGAGTGTGCTACTACGAACAA 1598
|||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1557 AAAGCCTGAGAACAGCAACAACAATAAGAAACCAGAAAATGAGTGTGCTACTACGAACAA 1616
Query 1599 GAACGATGCAATGGGGGAAATGATTCTAACACACAGAAGGTTATTGTCCGAAACTCGTGA 1658
|||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1617 GAACGATGTAATGGGGGAAATGATACGAACACACAGAAGGTTATTGTCCGAAACTCGTGA 1676
Query 1659 AATCGATGAAGCGTCTTGCAATTTCCCATCTTCTAGAAGACAAGCAAGTCCAGTTCGACA 1718
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1677 AATCGATGAAGCGTCTTGCAATTTCCCATCTTCTCGAAGACAAGCAAGTCCAGTTCGACA 1736
Query 1719 ATGGATTTCAAGAACAGTGGCACCTGGTCTTCTAGGCTCGTCGGATATTGCAATAGCTCA 1778
||||||||||||||| || ||||||| |||||||||| ||||||| ||||| ||||||||
Sbjct 1737 ATGGATTTCAAGAACCGTCGCACCTGATCTTCTAGGCCCGTCGGAGATTGCGATAGCTCA 1796
Query 1779 TGGAGTAAAGGATAATACTTTGAAAACTAAGCTCGCAAAGAGTTCAAAGTCGCGTCTTCG 1838
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1797 TGGAGTAAAGGATAATACTTTGAAAACTAAGCTAGCAAACAGTTCAAAGTCGCGTCTTCG 1856
Query 1839 GTTATTCAAAGGCTAATCCATCCAGAGTGGTTCGGTCGAAAACG-A-------GAG--TT 1888
|||||||||||||||||| ||||||||||||||||||||||||| | ||| ||
Sbjct 1857 GTTATTCAAAGGCTAATCTATCCAGAGTGGTTCGGTCGAAAACGGACAAAAACGAGAGTT 1916
Query 1889 CTTGTTGGATACACACAGATCCCTGAATTTCATTCATATTCATGTTCTTTGTAAATCAAA 1948
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1917 CTTGTTGGATACACACAGATCCCTGAGTTTCATTCATATTCACGTTCTTTGTAAATCAAA 1976
Query 1949 CATATCTATATATTTGTATAAT 1970
|| |||||||||||||||||||
Sbjct 1977 CACATCTATATATTTGTATAAT 1998
> AT1G64180.1 | Symbols: | intracellular protein transport protein
USO1-related | chr1:23821516-23824359 FORWARD LENGTH=2072
Length=2072
Score = 398 bits (215), Expect = 1e-109
Identities = 492/622 (79%), Gaps = 34/622 (5%)
Strand=Plus/Plus
Query 513 TAGTTCATTGGATTTCCGAGGAAG-AG-CG-TCTAGAGAACCTCATTACAATCTCAAGAC 569
||| |||||||| ||||| ||||| || || || | || ||| | ||||| |||||||
Sbjct 625 TAGCTCATTGGAGTTCCGTGGAAGAAGACGAGCTGGTGAGCCTAACAACAATATCAAGAC 684
Query 570 ATCAACCGAACTTCTTAAAGTATTGAACCGTATTTGGAGCCTTGAGGAGCAGCATGTCTC 629
||||||||||||||||||||| ||||||| || |||| ||| |||||||||||| || |
Sbjct 685 ATCAACCGAACTTCTTAAAGTGCTGAACCGAATCTGGATCCTCGAGGAGCAGCAT-TC-C 742
Query 630 -C-AATATCTCTTTGATAAAGGCTTTGAAAACCGAGGTGGCTCATTCTCGTGTTCGAATC 687
| |||||||| || ||||| |||||||||||||| | ||||| || |||| || |||
Sbjct 743 GCTAATATCTCCTTAATAAAATCTTTGAAAACCGAGCTTGCTCACTCACGTGCCCGGATC 802
Query 688 AAGGAGCTTCTTAGGTACCAGCAAGCTGATAGACACGAGT-TAGACGGTGTGGTGAAGCA 746
|| || |||||||| | | ||||||| |||| || ||| | | || | | | ||||||||
Sbjct 803 AAAGACCTTCTTAGATGCAAGCAAGCCGATAAACGCGA-TATGGATGATTTTGTGAAGCA 861
Query 747 ACTCGCTGAAGAAAAGTTGTTGAGGAAGA-AT-AAGGAAGTTGAGCGGATGAGCTCTGCT 804
|||||| ||||||||| ||| || ||| | |||||| || ||| | |||||||||
Sbjct 862 ACTCGCGGAAGAAAAGCTGTCGA--AAGGTACGAAGGAACACGATCGGTTAAGCTCTGCT 919
Query 805 GTTCATTCTGTGAGGAAAGAGTTAGAAGATGAGCGGAAGCTTAGGAAACGTTCTGAGAGT 864
||||| || | | ||||||||||||||| || ||||||||||||||||||
Sbjct 920 GTTCAATC-GC----------T-AGAAGATGAGCGGAAACTAAGGAAACGTTCTGAGAGT 967
Query 865 TTGCATAGGAAATTGGCACGAGAGCTCTCGGAAGTGAAGTCTTCGTTGTCTAACTGTGTT 924
|| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 968 CTGTATAGGAAATTGGCACAAGAGCTCTCGGAAGTGAAGTCAACGTTGTCTAACTGCGTT 1027
Query 925 AAGGAGCTTGAGAGAGGGGCTAAATCAAATAAGATGATGGAGCTACTCTGCGATGAGTTT 984
|||||| | ||||||||| || | ||||| || || ||||| | | || |||||||||
Sbjct 1028 AAGGAGATGGAGAGAGGGACTGAGTCAAAGAAAATTCTGGAGAGATTATGTGATGAGTTT 1087
Query 985 GCCAAAGGGATCAAGAGTTACGAAGAGG-AGATTCACGGTTTAAAGAAGAAGAATCTTGA 1043
|| ||||||||||||||||||||| ||| ||||||| ||||||||| ||||| | | ||
Sbjct 1088 GCAAAAGGGATCAAGAGTTACGAA-AGGGAGATTCATGGTTTAAAGCAGAAG--T-TGGA 1143
Query 1044 TAAGGATTGGGCGGGTCGAGG-TGGAGGAGATCA-ATTGGTTCTTCATATCGCGGAATCT 1101
|||| | ||| ||| | || || | |||||| || | ||||| ||| ||||||||
Sbjct 1144 TAAGAACTGGAAAGGTTG-GGATGAACAAGATCATAT-GATTCTTTGTATTGCGGAATCA 1201
Query 1102 TGGCTTGACGAAAGGATGCAGA 1123
|||||||| |||||||| ||||
Sbjct 1202 TGGCTTGATGAAAGGATTCAGA 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99095875830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5