BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493843
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41350.1 | Symbols: | RING/U-box superfamily protein | chr5... 1864 0.0
> AT5G41350.1 | Symbols: | RING/U-box superfamily protein | chr5:16541462-16543972
REVERSE LENGTH=1391
Length=1391
Score = 1864 bits (1009), Expect = 0.0
Identities = 1251/1358 (92%), Gaps = 55/1358 (4%)
Strand=Plus/Plus
Query 1 TAATTTCTAAGGAAAGTCATTTTGATAGAGCGCACGAT-AA-ACAGCACCGC-AAAAGCA 57
|||||||| ||||||||||||||||||||||||||||| || |||||||||| |||||||
Sbjct 2 TAATTTCTTAGGAAAGTCATTTTGATAGAGCGCACGATAAACACAGCACCGCAAAAAGCA 61
Query 58 CAGAAGCAGAGAAGGACGAAGACaaaacaaaaacaaaaaGCTTCTCCC--G-A-GAAAAG 113
||||||||||||| |||||||||||||| || |||||||||| ||| | | |||||
Sbjct 62 CAGAAGCAGAGAAAGACGAAGACAAAAC---AA-AAAAAGCTTCCCCCAAGAACAAAAAG 117
Query 114 TTAGCATAGATGAAGAGTCTTCGGTTTTTGTAGTTGTTGTGATAA-A-AACAGaaaaaaa 171
|||||||||||||||||||||||| |||||||||| |||| | || | || | |||||||
Sbjct 118 TTAGCATAGATGAAGAGTCTTCGGGTTTTGTAGTTTTTGT-AAAACAGAAAAAAAAAAAA 176
Query 172 a-a-aaGAAGAGATGGGAGGTTGCTGTTGTTGTTCTTCTTCACAAAGAGCTGATGTAGAT 229
| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 177 AGAGAAGAAGAGATGGGAGGTTGCTGTTGTTGTTCTTCTTCACGAAGAGCTGATGTAGAT 236
Query 230 AACGGACCTGCGTACTACTACTACCCAAGGGCAACAGAAGAGCGTGTGCCTTTGTCTTCC 289
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 237 AATGGACCTGCGTACTACTACTACCCAAGGGCAACAGAAGAGCGTGTGCCTTTATCTTCC 296
Query 290 GCTCATAATAGGACTTCCTCTGCAATCTCTACTGGTGTTGTAGTAGTAGACACAAACTTA 349
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCTCATAACAGGACTTCCTCTGCAATCTCTACTGGTGTTGTAGTAGTAGACACAAACTTA 356
Query 350 GAGACATCATCTCCTGATGCTTATATACCACCGCCACTGCCTATCCCTTTCGATGTGGCT 409
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 357 GAGACATCATCTCCTGATGCTTATATACCACCGCCACTGCCTACCCCTTTCGATGTGCCT 416
Query 410 ATAGGGGTTCCTCAAACACCAGCCAGTGGTGAAGAGGCTACTTGTGTTGATATTAGAGAG 469
|||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 417 ATAGGGATTCCTCAAACACCAGCTAGTGGTGAAGAGGCTACTTGTGTTGATATAAGAGAG 476
Query 470 GTTTCAGTGGACTCTGCTAATACCGAGTCTTCTCAAGAAACAGTTGATGGTATTACTCTC 529
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 477 GTTTCGGTGGACTCTGCTAATACCGAGTCTGCTCAAGAAACAGTTGATGGTATTACTCTC 536
Query 530 GGGGTTCCAACTACATGCTCACATAAAGAGACAGATTGCAAAATCCAAACAGAGATTGAT 589
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 537 GGGGTTCCAACTACATGCTCACATAAAGAGACAGATAGCAAAATCCAAACAGAGATTGAT 596
Query 590 CTTGAATCTACTGAAGAAATAGACCCAAAGCTATCAAAAGCCGTCTTTATACCAATAGAG 649
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 597 CTTGAATCTACTGAAGAAATAGACCCGAAGCTATCAAAAGCTGTTTTTATACCAATAGAG 656
Query 650 GAAGAGGAGGATTGTCCCATATGTTTGGAAGAATATGATATCGAGAACCCGAAACTTGTA 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GAAGAGGAGGATTGTCCCATATGTTTGGAAGAATATGATATCGAGAACCCGAAACTTGTA 716
Query 710 GCCAAATGTGATCACCATTTTCACCTTGCATGCATTCTAGAGTGGATGGAGAGAAGTGAA 769
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 717 GCCAAATGTGATCACCATTTTCACCTTGCATGCATTCTAGAATGGATGGAGAGAAGTGAA 776
Query 770 ACCTGCCCCGTCTGCAACAAGGAAATGGTATTTGACTCTCCTCTCGACTAGCAACCCGCA 829
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 777 ACCTGCCCCGTCTGCAACAAGGAAATGGTATTTGACTCTACTCTTGACTAGCAACCCGCA 836
Query 830 AGTACTGCATCTTAGAAGGCTCAATTCTCTCTGTATCCGAACaaagaaattagagag-aa 888
| | | ||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||
Sbjct 837 AATGCCGCATCTTAGAAGGCTCAATTCTCTCTGTATCAGAAGAAAGAAATTGGAGAACAA 896
Query 889 ggagaagaaacttaaaagaaaaagaaaatgg-taagaaTACACTAATAGCTGATTCACAA 947
| |||| |||||||||| | ||| ||| ||| |||||||||||||||||||||| |||||
Sbjct 897 G-AGAA-AAACTTAAAA-AGAAA-AAA-TGGGTAAGAATACACTAATAGCTGAT-CACAA 950
Query 948 AGCTGAATTTACGAAACATGTGAGTGTTGATATACATATGTTTGTGTACAGACGTTTCAA 1007
|| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 951 AGTTGGATTTACGAAACATGTCAGTGTTGATATACATATGTTTGTGTACAGACGTTTCAA 1010
Query 1008 GTCGTCTACAAAAAAT-GGAGTTTAAGAATTAGAGTTTGTGCTTTAGATTCACTTCTGTG 1066
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1011 ATCGTCTACAAAAAAACGGAGATTAAGAATTAGAGTTTGTGCTTTAGATTCACTTCTGTG 1070
Query 1067 AATAAAAAA-----------T--T--TTT--CTTCTAGAtgtttta-ttttggttttgtt 1108
||||||||| | | ||| ||||||||||||||| |||||||
Sbjct 1071 AATAAAAAACGAGACAAAACTGATAATTTTTCTTCTAGATGTTTTAATTTTGGT------ 1124
Query 1109 aattcttgtttataggttcttttaggagtgtttttaAGCTGGGGTTTCAATTTGGGTTTG 1168
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1125 AATTCTTGTTTATAGGTTATTTTAGGAGTGTTTTAAAGCTGGGGTTTCAATTTGGGTTTG 1184
Query 1169 ATTCAGTTTTTTCTTGGGTTTAAGAAAAATGGTAATCAAACTGAAATTGAG--TTTATTA 1226
|||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 1185 ATTCAGTTTTTTCTTGAGTTTAAGAAAAATATTAATCAAACTGAAATTGAGAGTTTGTTA 1244
Query 1227 TGTATGCATTGGgtttattacggttcggattt-agtttggtttagtgtttatttattttc 1285
|||||| |||||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 1245 TGTATGGATTGGGTTTATTACGGTTCG-ATTTTAGTTTGGTTTAGTGCTTATTTATTTTC 1303
Query 1286 tttttattgttatGTGAT--GTAATATGAAAATTGTTT 1321
||| | ||||| |||||| ||||||||||||||||||
Sbjct 1304 TTTATGTTGTTCTGTGATATGTAATATGAAAATTGTTT 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5