BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493886
Length=2890
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40890.1 | Symbols: ATCLC-A, CLC-A, CLCA, ATCLCA | chloride ... 4394 0.0
AT3G27170.1 | Symbols: CLC-B, ATCLC-B | chloride channel B | ch... 1934 0.0
> AT5G40890.1 | Symbols: ATCLC-A, CLC-A, CLCA, ATCLCA | chloride
channel A | chr5:16381346-16385319 REVERSE LENGTH=2947
Length=2947
Score = 4394 bits (2379), Expect = 0.0
Identities = 2742/2913 (94%), Gaps = 42/2913 (1%)
Strand=Plus/Plus
Query 1 CTCCTCACAACAAATAAAATTCAAATTAAATGTTATG--T-AAT-GGTGTATAT-TAATG 55
||||||||||||||||| ||| ||||||||||||||| | || || || |||||
Sbjct 10 CTCCTCACAACAAATAACATTTAAATTAAATGTTATGTTTGTATCACCATACATATAATG 69
Query 56 ATGCATGCA-TGTAT-CAT--ATGTGATTATATGT--AGAGAGATCTATAAAGCTTCA-A 108
|| || | || || ||| |||| || |||||| ||||||||||||||||||||| |
Sbjct 70 GTGTAT--ATTG-ATGCATGCATGT-ATCATATGTAGAGAGAGATCTATAAAGCTTCATA 125
Query 109 AAGAGTGTTTCCTCTAGAAAAAACGACAAAATTCACAGAG-AAATCCAAACCAAAAGTAG 167
|| ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 126 AA-AGTGTTT-CTCTAGAAAAAACGACAAAATTCGCAGAGAAAATCCAAACCAAAAGTAG 183
Query 168 TTTTGTAACAGAGAGATATATAGAAAGCTCTTGAAGATCTAACCAAAATCTACTTTTGTT 227
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TTTTGTAACAGAGAGATAGATAGAAAGCTCTTGAAGATCTAACCAAAATCTACTTTTGTT 243
Query 228 GTTCTTC-t-tt-ttttCCTATATTTTCTGAGTGGTCCTCTATATTGTCACTTGGATCAT 284
|||||| | || ||||| || |||||| |||||||||| | |||||| ||||||||||
Sbjct 244 CTTCTTCTTCTTCTTTTCATAAATTTTCGGAGTGGTCCTATTTATTGTTTCTTGGATCAT 303
Query 285 TAGAGAGGGAGTTACCGATGGATGAAGATGGAAACTTGCAGATTAGTAATAGTAATTACA 344
||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TAGAGAGACAGCTATCGATGGATGAAGATGGAAACTTGCAGATTAGTAATAGTAATTACA 363
Query 345 ATGGagaagaagaagaagaagGAGATCCAGAGAACAACACTTTGAACCAACCTCTCCTTA 404
||||||||||||||| | || |||||||||||||||||||||||| ||||| || ||||
Sbjct 364 ATGGAGAAGAAGAAG--G-AGAAGATCCAGAGAACAACACTTTGAATCAACCACTGCTTA 420
Query 405 AGAGACATAGAACTCTTTCTTCAACTCCTCTTGCTTTGGTCGGTGCCAAGGTTTCACACA 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAGACATAGAACTCTTTCTTCAACTCCTCTTGCTTTGGTCGGTGCCAAGGTTTCACACA 480
Query 465 TCGAGAGTTTAGATTATGAAATAAATGAGAATGATCTGTTCAAGCATGACTGGAGAAGCA 524
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 TCGAGAGTTTAGATTATGAAATAAACGAGAATGATCTGTTCAAGCATGACTGGAGAAGCA 540
Query 525 GATCAAAAACACAAGTGTTTCAATACATATTTC-TAAAATGGACATTAGCTTGTCTTGTT 583
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 541 GATCAAAAGCACAAGTGTTTCAATACATA-TTCTTAAAATGGACATTAGCTTGTCTTGTT 599
Query 584 GGTCTCTTCACTGGTCTTATCGCTACTCTCATCAACCTCGCTATCGAAAACATCGCCGGT 643
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 600 GGTCTCTTCACTGGTCTTATCGCTACTCTCATCAACCTTGCTGTCGAAAACATCGCCGGT 659
Query 644 TACAAACTTCTCGCCGTAGGCTACTACATCGGTCAAGATAGGTTTTGGACAGGTCTGATG 703
||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 660 TACAAACTTCTCGCCGTCGGCTACTACATTGCTCAAGATAGGTTTTGGACAGGTCTGATG 719
Query 704 ATCTTTACGGGGGCAAATTTGGGTCTGACTTTGGTGGCGACAGTACTTGTTGTTTACTTT 763
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTCTTTACGGGGGCGAATTTGGGTCTGACTTTGGTGGCGACAGTACTTGTTGTTTACTTT 779
Query 764 GCTCCTACGGCCGCTGGTCCCGGAATTCCTGAGATTAAAGCTTATCTTAATGGCATTGAC 823
||||||||||| |||||||| || || ||||||||||||||||| |||||||||||||||
Sbjct 780 GCTCCTACGGCGGCTGGTCCGGGGATCCCTGAGATTAAAGCTTACCTTAATGGCATTGAC 839
Query 824 ACTCCCAATATGTTTGGTTTTACCACCATGATGGTTAAGATTGTTGGAAGTATTGGAGCG 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACTCCCAATATGTTTGGTTTTACCACCATGATGGTTAAGATTGTTGGAAGTATTGGAGCG 899
Query 884 GTTGCAGCTGGACTTGATCTTGGTAAAGAAGGGCCTTTGGTTCATATTGGAAGCTGCATT 943
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 900 GTTGCAGCTGGACTTGATCTTGGTAAAGAAGGGCCATTGGTTCATATTGGAAGTTGCATA 959
Query 944 GCTTCTTTGCTTGGTCAAGGTGGTCCAGATAATCACAGAATCAAGTGGAGATGGCTTCGT 1003
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 GCTTCTTTGCTTGGTCAAGGTGGTCCAGATAATCACAGAATCAAATGGAGATGGCTTCGT 1019
Query 1004 TACTTCAACAACGATAGAGATCGAAGAGATCTTATTACCTGTGGATCTGCCTCTGGAGTA 1063
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1020 TACTTCAACAACGATAGAGATCGAAGAGATCTTATTACATGTGGATCTGCCTCTGGAGTA 1079
Query 1064 TGTGCAGCTTTCAGGTCACCAGTAGGAGGAGTGCTTTTCGCACTTGAGGAAGTTGCTACG 1123
||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 1080 TGTGCTGCTTTCAGGTCACCAGTAGGAGGAGTACTTTTCGCTCTTGAGGAAGTCGCTACG 1139
Query 1124 TGGTGGAGAAGTGCTCTCTTGTGGAGGACATTCTTCAGTACAGCCGTTGTGGTGGTTGTA 1183
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1140 TGGTGGAGAAGCGCTCTCTTGTGGAGAACATTCTTCAGTACAGCCGTTGTGGTGGTTGTA 1199
Query 1184 CTGAGAGCATTCATTGAAATTTGTAATTCCGGGAAATGCGGGCTTTTCGGCTCAGGAGGA 1243
| ||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1200 TTAAGAGCGTTCATTGAGATTTGTAACTCCGGGAAATGCGGACTTTTCGGCTCAGGAGGA 1259
Query 1244 CTCATTATGTTTGATGTAAGTCATGTAGAGGTTAGGTACCACGCAGCTGATATAATCCCG 1303
||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1260 CTCATTATGTTCGATGTGAGTCATGTAGAGGTTAGGTACCACGCAGCAGATATAATCCCA 1319
Query 1304 GTCACACTGATTGGAGTCTTTGGTGGCATTCTTGGAAGCTTGTACAATCATCTTTTGCAT 1363
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1320 GTCACATTGATTGGAGTCTTTGGTGGCATTCTTGGAAGCTTGTACAATCATCTTCTGCAT 1379
Query 1364 AAAGTTCTCCGGCTTTACAATCTCATCAATCAGAAGGGTAAGATTCACAAGGTGCTTCTA 1423
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 1380 AAAGTTCTCCGGCTTTACAATCTCATCAACCAGAAGGGAAAGATTCATAAGGTGCTTCTA 1439
Query 1424 AGTCTTGGGGTATCTCTATTTACCTCGGTTTGCTTGTACGGTCTTCCTTTCTTGGCGGAA 1483
|||||||||||||||||||| || || |||||||||| ||||||||||||||| ||||||
Sbjct 1440 AGTCTTGGGGTATCTCTATTCACATCAGTTTGCTTGTTCGGTCTTCCTTTCTTAGCGGAA 1499
Query 1484 TGCAAGCCTTGTAATCCTTCGATAGACGAGATGTGTCCAACAAATGGAAGATCAGGAAAC 1543
|||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 1500 TGCAAGCCTTGTGATCCTTCTATAGACGAGATATGTCCAACAAACGGAAGATCAGGAAAT 1559
Query 1544 TTCAAGCAATTCAACTGTCCAAATGGTTATTACAACGATCTAGCTACTCTGCTTCTCACA 1603
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1560 TTCAAGCAATTCAACTGTCCAAATGGTTATTACAACGATCTATCCACTCTGCTTCTCACA 1619
Query 1604 ACCAATGATGATGCAGTCAGAAACATTTTCTCTTCAAACACTCCTAATGAGTTTGGTATG 1663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1620 ACCAATGATGATGCAGTCAGAAACATTTTCTCTTCAAACACTCCTAATGAGTTTGGCATG 1679
Query 1664 GTTTCTCTCTGGATATTCTTTGGCCTCTACTGCATTTTGGGTCTTATCACATTCGGTATA 1723
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1680 GTTTCTCTCTGGATATTCTTTGGCCTCTACTGCATTTTGGGTCTTATAACATTCGGTATA 1739
Query 1724 GCGACACCATCGGGTCTCTTCCTACCGATTATCCTCATGGGTTCTGCATACGGTCGGATG 1783
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1740 GCGACACCGTCGGGTCTCTTCCTACCGATTATCCTCATGGGTTCTGCATACGGTAGGATG 1799
Query 1784 CTAGGCACAGCAATGGGATCTTACACAAACATAGATCAAGGGCTTTACGCGGTTCTTGGT 1843
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 CTAGGCACAGCAATGGGGTCTTACACAAACATAGATCAAGGGCTTTACGCGGTTCTTGGT 1859
Query 1844 GCAGCTTCACTCATGGCTGGTTCAATGAGAATGACAGTTTCACTCTGTGTTATATTCCTT 1903
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1860 GCAGCTTCACTCATGGCTGGTTCAATGAGAATGACTGTTTCACTCTGTGTTATATTTCTG 1919
Query 1904 GAACTCACCAACAACCTTCTTTTGTTACCCATTACAATGTTTGTGCTTCTGATAGCTAAA 1963
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1920 GAACTCACCAACAACCTTCTTTTGTTGCCCATTACAATGTTTGTGCTTCTGATAGCTAAA 1979
Query 1964 ACAGTTGGAGACAGCTTCAATCTAAGTATCTACGAGATCATTCTCCATCTAAAGGGCTTA 2023
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1980 ACAGTAGGTGACAGCTTCAATCTAAGTATCTACGAGATCATTCTCCATCTTAAGGGCTTA 2039
Query 2024 CCGTTCTTGGAAGCAAATCCAGAGCCATGGATGAGGAATCTCACTGTAGGTGAGCTTAAC 2083
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2040 CCTTTCTTGGAAGCAAATCCAGAGCCGTGGATGAGGAATCTCACTGTAGGTGAGCTTAAC 2099
Query 2084 GACGCTAAGCCTCCGGTTGTAACACTTAACGGAGTAGAGAAAGTCGCGAATATAGTCGAT 2143
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 2100 GACGCTAAGCCTCCGGTTGTAACACTTAACGGAGTAGAAAAAGTGGCAAATATAGTCGAT 2159
Query 2144 GTACTAAGGAACACAACGCATAACGCATTCCCAGTCTTGGATGGAACAGATCAAACCACT 2203
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 2160 GTACTAAGGAACACAACGCATAACGCATTCCCAGTCTTGGATGGAGCAGATCAAAACACT 2219
Query 2204 GGTACAGAGCTCCATGGTCTGATCCTAAGAGCTCACCTTGTGAAAGTTCTGAAAAAGAGA 2263
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2220 GGCACAGAGCTCCATGGTCTGATCCTAAGAGCTCACCTTGTGAAAGTTCTGAAAAAGAGA 2279
Query 2264 TGGTTCTTGAATGAGAAAAGGAGAACAGAAGAATGGGAAGTTCGGGAAAAGTTCACACCG 2323
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 2280 TGGTTCTTGAATGAGAAAAGGAGAACAGAAGAGTGGGAAGTTAGGGAAAAGTTCACACCG 2339
Query 2324 GTTGAATTAGCTGAGAGAGAAGATAATTTCGACGATGTTGCAATTATAAGCTCAGAGATG 2383
|||||||||||||||||||||||||| ||||| ||||||||||| | |||||||||||||
Sbjct 2340 GTTGAATTAGCTGAGAGAGAAGATAACTTCGATGATGTTGCAATCACAAGCTCAGAGATG 2399
Query 2384 CAATTGTATGTTGATCTTCATCCTTTGACCAACACTACACCTTACACAGTGGTGCAGAGT 2443
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2400 CAATTGTATGTTGATCTTCATCCTTTGACCAACACTACACCTTACACAGTGGTGCAAAGT 2459
Query 2444 ATGTCAGTGGCTAAAGCTTTGGTGCTGTTCCGGTCAGTGGGTCTCAGACATTTGCTGGTT 2503
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 2460 ATGTCAGTGGCTAAAGCTTTGGTTCTGTTCCGGTCAGTGGGTCTCAGACATTTACTGGTG 2519
Query 2504 GTTCCCAAGATTCAAGCTTCAGGGATGTCACCTGTGATAGGGATCTTAACAAGGCAAGAT 2563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2520 GTTCCCAAGATTCAAGCTTCAGGGATGTCACCTGTGATAGGGATCTTAACAAGGCAAGAT 2579
Query 2564 CTAAGGGCTTATAACATTCTACAAGCATTTCCTCACTTGGATAAACACAAAAGTGGAAAA 2623
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2580 CTCAGGGCTTATAACATTCTACAAGCATTTCCTCACTTGGATAAACACAAAAGTGGAAAA 2639
Query 2624 -CTTCGATGAATAAGCCAAAACTGCAAAGAAG-GTTCGCTATTACTTGGTTTGTGTGATT 2681
|| |||||||||||||||| |||||||| | |||| |||||| |||||||||||||||
Sbjct 2640 GCTA-GATGAATAAGCCAAAA-TGCAAAGA-GCGTTCACTATTATTTGGTTTGTGTGATT 2696
Query 2682 TGTGTTTTCTTTCCACATTCTTAGTTTATATATATTCTGTCCAGTTTTGCTTGCATTCTT 2741
|||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2697 CGTGTGT-CTTTCCACATTCTTAGTTGATATATATTCTGTCCAGTTTTGCTTGCATTCTT 2755
Query 2742 TCTTCAAGACCaaaaaaaCAAATTATACTATTTGGTAGATTTGTGTGTTTCTACTTGTAA 2801
||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct 2756 CCTTCAAGACCAAAAA--CAAATTATACCATTTGGTAGATTTGTGT-TTTCTACTTGTAA 2812
Query 2802 ATCTC-TAtttttttCCCCACATTA-CGAGTT-CTAAAGAAGAATAAAAACAA-TTTGCA 2857
||||| | ||||||||||||| || | |||| | ||||||||| || || || |||| |
Sbjct 2813 ATCTCCT-TTTTTTTCCCCACGTTTTC-AGTTTCAAAAGAAGAAGAATAAGAAATTTGAA 2870
Query 2858 TACAGAACAAAACTTTGAAGGTTCCATGGTGTT 2890
|||||||||||||||||||| |||||||| |||
Sbjct 2871 TACAGAACAAAACTTTGAAGCTTCCATGGAGTT 2903
> AT3G27170.1 | Symbols: CLC-B, ATCLC-B | chloride channel B |
chr3:10024017-10027198 FORWARD LENGTH=2750
Length=2750
Score = 1934 bits (1047), Expect = 0.0
Identities = 1903/2312 (82%), Gaps = 76/2312 (3%)
Strand=Plus/Plus
Query 358 agaagaagGAGATCCAGAGAACAACAC-TTTGAACCAACCTCTCCTTAA-GAGACATAGA 415
||||| ||| || ||||||| |||||| || ||||||||||| |||| | | || ||
Sbjct 181 AGAAGGAGGCGACCCAGAGAGCAACACACTT-AACCAACCTCTAGTTAAGGCTA-ATCGA 238
Query 416 ACTCTTTCTTCAACTCCTCTTGCTTTGGTCGGTGCCAAGGTTTCACACATCGAGAGTTTA 475
|| |||||||||||||| ||||||||||| |||||||| ||||| || ||||| || ||
Sbjct 239 ACACTTTCTTCAACTCCACTTGCTTTGGTTGGTGCCAAAGTTTCCCATATCGAAAGCTTG 298
Query 476 GATTATGAAATAAATGAGAATGATCTGTTCAAGCATGACTGGAGAAGCAGATCAAAAACA 535
|| ||||||||||| ||||| |||||||| |||||||| ||||||| |||||||| ||
Sbjct 299 GACTATGAAATAAACGAGAACGATCTGTTTAAGCATGATTGGAGAAAAAGATCAAAGGCA 358
Query 536 CAAGTGTTTCAATACATATTTC-TAAAATGGACATTAGCTTGTCTTGTTGGTCTCTTCAC 594
||||| |||||||| | ||| | |||||||| |||||||||||||||||||| |||||
Sbjct 359 CAAGTACTTCAATACGT-GTTCTTGAAATGGACGTTAGCTTGTCTTGTTGGTCTTTTCAC 417
Query 595 TGGTCTT-ATCGCTACTCTCATCAACCTCGCTATCGAAAACATCGCCGGTTACAAACTTC 653
|||| || |||||||||||||||||| | ||| | |||||||||||||| || || |||
Sbjct 418 TGGT-TTAATCGCTACTCTCATCAACTTAGCTGTTGAAAACATCGCCGGCTATAAGCTTT 476
Query 654 TCGCCGTAGGCT-ACTACATCGGTCAAGATAGGTTTTG-GACAGGTCTGATGAT-CTTTA 710
| ||||| || | ||| | || |||||| | | | || |||||||||||| | | ||
Sbjct 477 TAGCCGTTGG-TCACTTCCTCACTCAAGA-AAGATATGTTACAGGTCTGATGGTGC-TTG 533
Query 711 CGGGGGCAAATTTGGGTCTGACTTTGGTGGCGACAGTAC-TTGTTGTTTACTTTGCTCCT 769
||||| |||||||| ||||| ||||||||| | || | ||| ||| | ||||||||||
Sbjct 534 TTGGGGCGAATTTGGGACTGACGTTGGTGGCGTCTGTGCTTTG-TGTGTGCTTTGCTCCT 592
Query 770 ACGGCCGCTGGTCCCGGAATTCCTGAGATTAAAGCTTATCTTAATGGCATTGACACTCCC 829
||||| ||||| || ||||| |||||||| ||||||||||||||||| | || ||||||
Sbjct 593 ACGGCGGCTGGACCTGGAATCCCTGAGATCAAAGCTTATCTTAATGGTGTAGATACTCCC 652
Query 830 AATATGTTTGGTTTTACCACCATGATGGTTAAGATTGTTGGAAGTATTGGAGCGGTTGCA 889
|| ||||||||| ||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct 653 AACATGTTTGGTGCTACTACTATGATCGTTAAGATTGTTGGAAGCATTGGAGCGGTTGCA 712
Query 890 GCTGGACTTGATCTTGGTAAAGAAGGG-CCTTTGGTTCATATTGGAAGCTGCATTGCTTC 948
|||||||||||||| ||||||| |||| ||| | ||||| |||||||||||||| |||||
Sbjct 713 GCTGGACTTGATCTAGGTAAAG-AGGGTCCTCTAGTTCACATTGGAAGCTGCATAGCTTC 771
Query 949 TTTGCTTGGTCAAGGTGGTCCAGATAATCACAGAATCAAGTGGAGATGGCTTCGTTACTT 1008
||||||||| |||||||| |||| || ||| | ||||||||| | ||||||||||||||
Sbjct 772 TTTGCTTGGACAAGGTGGAACAGACAACCACCGTATCAAGTGGCGGTGGCTTCGTTACTT 831
Query 1009 CAACAACGATAGAGATCGAAGAGATCTTATTACCTGTGGATCTGCCT-CTGGAGTATGTG 1067
||||||||||||||| || || ||||| ||||| ||||| || | || | ||||| ||||
Sbjct 832 CAACAACGATAGAGACCGCAGGGATCTGATTACATGTGGCTCAG-CTGCAGGAGTGTGTG 890
Query 1068 CAGCTTTCAGGTCACCAGTAGGAGGAGTGCTTTTCGCACTTGAGGAAGTTGCTACGTGGT 1127
|||| ||||||||||| || ||||| || |||||||| || |||||||||||||| ||||
Sbjct 891 CAGCCTTCAGGTCACCTGTTGGAGGTGTACTTTTCGCCCTCGAGGAAGTTGCTACTTGGT 950
Query 1128 GGAGAAGTG-CTCTCTTGTGGAGGACATTCTTCAGTACAGCCGTTGTGGTGGTTGTACTG 1186
||||||||| || | |||||| |||| |||||||| ||||| ||||| |||||||| ||
Sbjct 951 GGAGAAGTGCCT-TATTGTGGCGGACTTTCTTCAGCACAGCGGTTGTTGTGGTTGTTCTA 1009
Query 1187 AGAGCA-TTCATTGAAATTTGTAATTCCGGGAAATGCGGGCTT-TTCGGCTCAGGAGGAC 1244
|||| | ||||| || || || ||||| ||||| || ||| || || || |||||| |
Sbjct 1010 AGAG-AGTTCATAGAGATCTGCAATTCAGGGAAGTGTGGG-TTGTTTGGAAAAGGAGGGC 1067
Query 1245 TCATTATGTTTGATGTAAGTCATGTAGAGGT-TAGGTACCACGCAGCTGATATAATCCCG 1303
| || ||||||||||| ||||||||| | | || ||||| | | |||||||||||||
Sbjct 1068 TAATCATGTTTGATGTGAGTCATGTA-ACTTATACTTACCATGTAACTGATATAATCCCT 1126
Query 1304 GTCACACTGATTGGAGTCTTTGGTGGCATTCTTGGAAGCTTGTACAATCATCTTTTGCAT 1363
|||| ||||||| || | ||||| |||||||| ||| |||||||||||||| |||||
Sbjct 1127 GTCATGTTGATTGGTGTAATCGGTGGAATTCTTGGGAGCCTGTACAATCATCTTCTGCAT 1186
Query 1364 AAAGTTCTCCGGCTTTACAATCTCATCAATCAGAAGGGTAAGATTCACAAGGTGCTTCTA 1423
||||||||| |||||||||||||||||||| ||||||||||||| || |||||||||||
Sbjct 1187 AAAGTTCTCAGGCTTTACAATCTCATCAATGAGAAGGGTAAGATCCATAAGGTGCTTCTC 1246
Query 1424 AGTCTTGGGGTATCTCTATTTACCTCGGTTTG-CTTGTACGGTCTTCCTTTCTTGGCGGA 1482
|||||| ||||| || ||||| || ||||| ||| || || ||||||||||| ||| |
Sbjct 1247 AGTCTTACAGTATCACTCTTTACATCTGTTTGCCTT-TATGGCCTTCCTTTCTTAGCGAA 1305
Query 1483 ATGCAAGCCTTGTAATCCTTCGATAGACGAGATGTGTCCAACAAATGGAAGATCAGGAAA 1542
||||||||||||| | || |||||||| ||||| || || || ||||||||||| || ||
Sbjct 1306 ATGCAAGCCTTGTGACCCCTCGATAGATGAGATATGCCCGACGAATGGAAGATCGGGTAA 1365
Query 1543 CTTCAAGCAATTCAACTGTCC-AAATGGTTATTACAACGATCTAGCTACTCTGCTTCTCA 1601
|||||| || ||| | || || ||| ||||| ||||| ||||||||||||||||||||||
Sbjct 1366 CTTCAAACAGTTCCATTGCCCTAAA-GGTTACTACAATGATCTAGCTACTCTGCTTCTCA 1424
Query 1602 CAACCAATGATGATGCAGTCAGAAACATTTTCTCTTCAAACACTCCTAATGAGTTTGGTA 1661
| ||||| |||||||| ||||||||| |||||||||| |||||||| |||||||||||||
Sbjct 1425 CCACCAACGATGATGCTGTCAGAAACCTTTTCTCTTCCAACACTCCCAATGAGTTTGGTA 1484
Query 1662 TGGTTTCTCTCTGGATATTCTTTG-GCCTCTACTGCATTTTGGGTCTTATCACATTCGGT 1720
||| ||| || ||||||||||||| | || |||||||| ||||| ||| ||||||| |||
Sbjct 1485 TGGGTTCCCTTTGGATATTCTTTGTG-CTATACTGCATCTTGGGGCTTTTCACATTTGGT 1543
Query 1721 ATAGCGACACCATCGGGTCTCTTCCTACCGATTATCCTCATGGGTTCTGCATACGGTCGG 1780
|| || ||||| || ||||||||||| || || |||||||||||| ||||||| || ||
Sbjct 1544 ATTGCAACACCGTCTGGTCTCTTCCTCCCCATCATCCTCATGGGTGCTGCATATGGCCGA 1603
Query 1781 ATGCTAGGCACAGCAATGGGATCTTACACAAACATAGATCAAGGGCTTTACGCGGTTCTT 1840
||||| ||| | ||||||||||| ||||||| || || ||||||||||| || || |||
Sbjct 1604 ATGCTTGGCGCTGCAATGGGATCATACACAAGTATTGACCAAGGGCTTTATGCTGTCCTT 1663
Query 1841 GGTGCAGCTTCACTCATGGCTGGTTCAATGAGAATGACAGTTTCACTCTGTGTTATATTC 1900
||||||||| ||||||||||||| || ||||||||||| || ||||||||||||||||||
Sbjct 1664 GGTGCAGCTGCACTCATGGCTGGATCGATGAGAATGACTGTGTCACTCTGTGTTATATTC 1723
Query 1901 CTTGAACTCACCAACAACCTTCTTTTG-TTACCCATTACAATGTTTGTGCTTCTGATAGC 1959
||||||||||||||||||||||||||| || || || || ||| | ||||||||||||||
Sbjct 1724 CTTGAACTCACCAACAACCTTCTTTTGCTT-CCTATAACGATGATCGTGCTTCTGATAGC 1782
Query 1960 TAAAACAGTTGGAGACAGCTTCAATCTAAGTATCTACGAGATCATTCTC-CATCTAAAGG 2018
||||| || ||||||||||| || | ||||| || || ||||| || ||||||||||
Sbjct 1783 CAAAACTGTGGGAGACAGCTTTAACCCGAGTATATATGACATCAT-CTTGCATCTAAAGG 1841
Query 2019 GCTTACCGTTCTTGGAAGCAAATCCAGAGCCATGGATGAGGAATCTCACTGTAGGTGAGC 2078
||||||| ||||| ||||||||||||||||| ||||||||||| ||||| || |||||||
Sbjct 1842 GCTTACCTTTCTTAGAAGCAAATCCAGAGCCGTGGATGAGGAACCTCACCGTTGGTGAGC 1901
Query 2079 TTAACGACGCTAAGCCTCCGGTTGTAACACTT-AACGGAGTAGAGAAAG-TCGCGAATAT 2136
|| || |||||||| ||||||||||| || || || || || |||| | | |||||
Sbjct 1902 TTGGTGATGCTAAGCCCCCGGTTGTAACCCTGCAA-GGTGTTGA-AAAGGTTTCAAATAT 1959
Query 2137 AGTCGATGTACTAAGGAACACAACGCATAACGCATTCCCAGTCTTGGATGGAA-CAGA-- 2193
||| ||||| |||| |||||| |||||||| |||||||| || || |||| || ||||
Sbjct 1960 AGTTGATGTGCTAAAGAACACGACGCATAATGCATTCCCTGTTTTAGATG-AAGCAGAAG 2018
Query 2194 T-CA--AA------C---CA-CTGG---TACAGAGCTCCATGG-TCTGATCCTAAGAGCT 2236
| | || | || |||| |||||| ||||| || | ||||| | |||||
Sbjct 2019 TACCTCAAGTGGGTCTAGCAACTGGGGCTACAGAACTCCACGGGT-TGATCTTGAGAGCG 2077
Query 2237 CACCTTGTGAAAGTTCTGAAAAAGAGATGGTTCTTGA-ATGAGAAAAGGAGAACAGAAGA 2295
||||| || |||||||||||||||||||||||||||| | |||||||| |||||||| ||
Sbjct 2078 CACCTCGTTAAAGTTCTGAAAAAGAGATGGTTCTTGACA-GAGAAAAGAAGAACAGAGGA 2136
Query 2296 ATGGGAAGTTCGG-GAAAAGTT-CACACCGGTTGAATTAGCTGAGAGAGAAGATAA-TTT 2352
||||| || | | |||||||| | || || |||||| ||||| |||||||| || |||
Sbjct 2137 GTGGGAGGT-CAGAGAAAAGTTTC-CATGGGATGAATTGGCTGAAAGAGAAGACAACTTT 2194
Query 2353 CGACGATGTTGCAATTATAAGCTCAGAGATGCAATTGTATGTTGATCTTCATCCTTTGAC 2412
||||| || || || | |||| | || ||| || ||||||| |||||||||||| | ||
Sbjct 2195 -GACGACGTGGCCATCACAAGCGCTGAAATGGAAATGTATGTCGATCTTCATCCTCTCAC 2253
Query 2413 CAACACTACACCTTACACAGTGGTGCAGAGTATGTCAGTGGCTAAAGCTTTGGTGCTGTT 2472
|||||| |||||||||||||| || ||| ||||||||||| || ||||| || || ||
Sbjct 2254 CAACACAACACCTTACACAGTCATGGAGAACATGTCAGTGGCCAAGGCTTTAGTACTTTT 2313
Query 2473 CCGGTCA-GTGGGTCTCAGACATTTGCTGGTTGTTCCCAAGATTCAAGCTTCAGGGATGT 2531
|||| || ||||| ||| | |||||||| ||||||||||||||||||| ||||| ||||
Sbjct 2314 CCGG-CAAGTGGGACTCCGGCATTTGCTTATTGTTCCCAAGATTCAAGCCTCAGGAATGT 2372
Query 2532 CACCTGTGATAGGGATCTTAACAAGGCAAGATCTAAGGGCTTATAACATTCTACAAGCAT 2591
|||||| ||||||||||||| || || || |||||||| || |||||||||||||| |
Sbjct 2373 GTCCTGTGGTAGGGATCTTAACCAGACAGGACCTAAGGGCATACAACATTCTACAAGCCT 2432
Query 2592 TTCCTCACTTGGATAAA-CACAAAAGTGGAAA 2622
|||||| |||||| ||| | |||| |||||||
Sbjct 2433 TTCCTCTCTTGGAAAAATC-CAAAGGTGGAAA 2463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143627957809
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5