BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493909
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40710.1 | Symbols: | zinc finger (C2H2 type) family protei... 1242 0.0
> AT5G40710.1 | Symbols: | zinc finger (C2H2 type) family protein
| chr5:16295036-16297004 FORWARD LENGTH=1068
Length=1068
Score = 1242 bits (672), Expect = 0.0
Identities = 840/920 (91%), Gaps = 16/920 (2%)
Strand=Plus/Plus
Query 14 AATGTCCATGTCATTGGATTCTCCTCTGCTTCTTGGTTTCTTCTCAGTTTTGGGGATTCT 73
|||| |||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 75 AATGCCCATCTCATTGGATTCTCCTCTGCTTCTTCATCTCTTCTCAGTTTTGGGGATTCT 134
Query 74 CACTTCCCACTTCGATAATTAAACAGCACCTCAAGGGATTTAAAGATCCTGTAGATGGAA 133
|||||||||||||||||||| |||| | ||| |||| ||||||||||||| ||| |
Sbjct 135 CACTTCCCACTTCGATAATTCAACAAAATCTCGAGGGTTTTAAAGATCCTGAAGA-CG-- 191
Query 134 GTTTTCATGAGATTCATTGTTCAAGAGAACGTAGCAGAGTTGCTTGGAAAATCATCCAAG 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 192 GTTTTCATGAGATTCATTGTTCAAGAGAACGTAGCAGAGTTGCTTGGAAAATCATTCAAG 251
Query 194 AGTATCTCATGCCATATGTGGAAAAAGAGCGGTATCAGTTACCGAGTAGTTGTAGAGTTC 253
||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 252 AGTATCTCATGCCGTATGTGGAAAAGGAGCGGTATCAGTTACCGAGTACTTGTAGAGTTC 311
Query 254 ATCGAGACAACGACATTTATAGAGAACAAGAAGAGCATAAAGTT-CATTCAGATATAAAC 312
|||||||||| |||||||||||||||||||||||||| ||| || | ||||||||| ||
Sbjct 312 ATCGAGACAATGACATTTATAGAGAACAAGAAGAGCACAAA-TTGCGTTCAGATATTAAT 370
Query 313 GAGTGGCGTTGTGGATTCTGTAAAAAGGCTTTTTATGAAGAGAAGTACCTCGATAAGCAT 372
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 371 GAGTGGCGTTGTGGATTCTGCAAAAAGGCTTTTTATGAAGAGAAGTATCTCGATAAGCAT 430
Query 373 TTCGATTCACGCCATTACAATTTGCTTAACGCGAGTCATGGTAAATGTCTGGCGGATCTT 432
|||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 431 TTCGATTCGCGCCATTACAATTTACTTAATGCGAGTCATGGTAAATGTCTGTCGGATCTT 490
Query 433 TGTGGAGCGTTGCATTGTGATCTTGTTGTAAATACAGCTCGGCTTAAGTCTAAGTGTAAT 492
|||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 491 TGTGGAGCGTTGCATTGTGATCTTGTTGTAGACACAGCTCGGCTTAAGTCCAAGTGTAAT 550
Query 493 CCTGCAGCTTCTGCTAGAAACCGGCACTTATGTGAGAGTTTGGCTAATAGTTGTTTTCCG 552
||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 CCTGCAGCTGCTGCAAAAAACCGGCACTTATGTGAGAGTTTGGCTAATAGTTGTTTTCCG 610
Query 553 GTAAATAAAGGTCCATCAGCCAACCGTCTTCACGATTTCTTCTTGCGCCAGTTCTGTGAT 612
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 611 GTAAATAAAGGTTCATCAGCCAACCGTCTTCACGATTTCTTCTTGCGTCAGTTCTGCGAT 670
Query 613 GCACATACATGTTCAGGAGGATCAAGGCCCTTTTCTCAAAAACCAAAGAAGAG-AGGTA- 670
||||||||||||||||||||||||| |||||| |||||||||||||||||||| || ||
Sbjct 671 GCACATACATGTTCAGGAGGATCAAAGCCCTTATCTCAAAAACCAAAGAAGAGGAG-TAT 729
Query 671 AGTTATACATTATCATCTCCATCAGCACTTTGATAGTGCTTCTTCTCTATTACAGCTTTG 730
||| |||||||| ||||||||| | |||| |||||||||||||||||||||||||||
Sbjct 730 AGTG-TACATTATTTTCTCCATCATCGTTTTGGTAGTGCTTCTTCTCTATTACAGCTTTG 788
Query 731 TCTATTTGTTCCAAAGAGGATTAAAGAGGGGATCTCAAGAACTGAAGCGTATTAGACGCA 790
|||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||
Sbjct 789 TCTATTTGTTCCGAAGAGGATTAAAGAGAAGATCTCAAGATTTGAAGCGTATTAGACACA 848
Query 791 ATGGTCTGAAGAAGAAACCCTTCTAAAGCATATCAACCTTTAGCTATAATG-CATCTGAG 849
|||||||||||||||||||||||||| |||||||| |||||||| ||||| | |||||
Sbjct 849 ATGGTCTGAAGAAGAAACCCTTCTAAC-CATATCAAGCTTTAGCTTTAATGGCGGCTGAG 907
Query 850 AGAGAATACAttttttttCTTAGGTAGA-GATGA---TTAGGATCAGATTAGTGCATTTT 905
||||| ||||||||||||||| | ||| ||| | |||||||||||||||||||||||
Sbjct 908 AGAGAGTACATTTTTTTTCTTTGCAAGATGATTACAATTAGGATCAGATTAGTGCATTTT 967
Query 906 GCAAAATCCCTTATA-TTAT 924
|||| |||||||| | ||||
Sbjct 968 GCAACATCCCTTACAATTAT 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47973610385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5