BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493944
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40440.1 | Symbols: ATMKK3, MKK3 | mitogen-activated protein... 2691 0.0
> AT5G40440.1 | Symbols: ATMKK3, MKK3 | mitogen-activated protein
kinase kinase 3 | chr5:16181682-16184627 FORWARD LENGTH=1791
Length=1791
Score = 2691 bits (1457), Expect = 0.0
Identities = 1601/1672 (96%), Gaps = 3/1672 (0%)
Strand=Plus/Plus
Query 40 AAAAGCAACAAACTTTGAGAGTAATAAAGAAAAAGTAGTTATAATGGCGGCATTGGAGGA 99
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 72 AAAAGCAACAAACTTTGAGAGTAACAAAGAAAAAGTAGTTATCATGGCGGCATTGGAGGA 131
Query 100 GCTAAAGAAGAAGCTTTCTCCATTGTTTGATGCTGAGAAGGGTTTTTCTTCATCGTCATC 159
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 132 GCTAAAGAAGAAGCTGTCTCCATTGTTTGATGCTGAGAAGGGTTTTTCTTCATCTTCATC 191
Query 160 GTTGGATCCAAACGATTCCTATTTATTATCAGATGGTGGAACAGTGAATTTACTTAGTAG 219
||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||
Sbjct 192 TTTGGATCCAAACGATTCATATTTATTATCTGATGGTGGGACTGTGAATTTACTTAGTAG 251
Query 220 ATCATATGGAGTTTACAATTTTAACGAGCTCGGGTTACAAAAATGTACATCTTCTCATGT 279
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 ATCATATGGAGTTTATAATTTTAACGAGCTCGGGTTACAAAAATGTACATCTTCTCATGT 311
Query 280 GGATGAGTCTGAAAGTTCTGAGACGACGTATCAATGTGCTTCCCATGAAATGAGGGTTTT 339
|||||||||||||||||| ||||||||||||||||||||||| || |||||| |||||||
Sbjct 312 GGATGAGTCTGAAAGTTCCGAGACGACGTATCAATGTGCTTCTCACGAAATGCGGGTTTT 371
Query 340 TGGAGCTATAGGAAGCGGAGCTAGCAGCGTTGTTCAACGAGCTATTCATATCCCTAATCA 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TGGAGCTATAGGAAGCGGAGCTAGCAGCGTTGTTCAACGAGCTATTCATATCCCTAATCA 431
Query 400 TAGAATTCTAGCTTTGAAGAAGATTAATATCTTTGAAAGGGAGAAAAGACAGCAATTGCT 459
||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 432 TAGAATTTTAGCGTTGAAGAAGATTAATATCTTTGAAAGGGAGAAAAGGCAGCAATTGCT 491
Query 460 TACAGAGATACGGACATTGTGTGAAGCTCCTTGTCATGAAGGACTTGTGGATTTTCACGG 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TACAGAGATACGGACATTGTGTGAAGCTCCTTGTCATGAAGGACTTGTGGATTTTCACGG 551
Query 520 AGCGTTTTATAGTCCAGACTCGGGACAAATCAGCATAGCTCTTGAATATATGAATGGAGG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 AGCGTTTTATAGTCCAGACTCGGGACAAATCAGCATAGCTCTTGAATATATGAATGGAGG 611
Query 580 ATCTCTTGCAGATATCTTAAAAGTTACAAAAAAGATACCTGAGCCGGTTCTTTCATCAAT 639
||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 612 ATCTCTTGCTGATATTTTAAAAGTAACAAAGAAGATACCTGAGCCGGTTCTTTCATCATT 671
Query 640 GTTCCACAAACTTTTGCAAGGATTGAGCTACTTGCATGGAGTGAGACATCTTGTACATAG 699
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 672 GTTCCACAAACTTTTGCAAGGATTGAGCTACTTGCATGGAGTGAGACATCTTGTTCATAG 731
Query 700 AGACATTAAACCTGCAAATTTACTTATAAATCTGAAAGGGGAACCGAAGATAACCGATTT 759
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 732 AGACATTAAACCTGCTAATTTGCTTATAAATCTCAAAGGGGAACCGAAGATAACCGATTT 791
Query 760 CGGCATAAGTGCTGGCCTCGAGAACTCAATGGCTATGTGTGCTACTTTTGTTGGAACTGT 819
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 792 TGGCATAAGTGCTGGCCTTGAGAATTCAATGGCTATGTGTGCTACTTTTGTTGGAACTGT 851
Query 820 CACCTACATGTCACCGGAGAGGATAAGGAATGACAGTTATTCTTATCCAGCTGATATATG 879
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 CACCTACATGTCACCAGAGAGGATAAGGAATGACAGTTATTCTTATCCAGCTGATATATG 911
Query 880 GAGCCTTGGTCTCGCTCTTTTTGAATGCGGCACTGGAGAGTTTCCGTATATAGCTAATGA 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GAGCCTTGGTCTCGCTCTTTTTGAATGCGGCACTGGAGAGTTTCCGTATATAGCTAATGA 971
Query 940 AGGGCCTGTTAATCTTATGTTGCAGATCTTGGATGATCCATCACCAACACCACCAAAACA 999
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 972 AGGGCCTGTTAATCTTATGTTGCAGATATTGGATGATCCTTCACCAACACCACCAAAACA 1031
Query 1000 AGAATTTTCACTAGAGTTCTGTTCCTTCATTGATGCTTGCCTCCAGAAGGATCCAGATGC 1059
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 AGAATTCTCACCAGAGTTCTGTTCCTTCATTGATGCTTGCCTCCAGAAGGATCCAGATGC 1091
Query 1060 TAGACCAACAGCTGACCAGCTCTTGGCACACCCTTTTATTACAAAACACGAGAAGGAAAG 1119
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1092 TCGACCAACAGCTGACCAGCTCTTGTCACACCCTTTTATTACAAAACACGAGAAGGAAAG 1151
Query 1120 AGTAGATTTGGCGACTTTTGTTCAAAGCATCTTTGATCCAACTCAGAGACTGAAAGATTT 1179
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1152 AGTAGATTTGGCGACTTTTGTTCAAAGCATCTTTGATCCAACTCAGAGATTGAAAGATTT 1211
Query 1180 AGCTGATATGCTCACCATACACTATTACTCCCTCTTTGATGGATTTGATGATCTTTGGAA 1239
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1212 AGCTGATATGCTCACCATACATTATTACTCCCTCTTTGATGGATTTGATGATCTTTGGCA 1271
Query 1240 CCATGCAAAATCGCTCTACACTGAAACTTCAGTTTTCAGTTTCTCTGGGAAACATCACAC 1299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1272 CCACGCAAAATCGCTCTACACTGAAACTTCAGTTTTCAGTTTCTCTGGGAAACATAACAC 1331
Query 1300 AGGATCAACTGAAATCTTCTCAGCATTATCAGACATTCGTAACACATTAACAGGGGATTT 1359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1332 AGGATCAACTGAAATCTTCTCAGCATTATCAGACATTCGTAACACATTAACAGGAGATTT 1391
Query 1360 ACCGAGTGAGAAGCTCGTCCATGTCGTTGAGAAGCTTCATTGCAAGCCACACGGCAATGG 1419
|||||||||||| || || |||||||||||||||||||||||||| || ||||| |||
Sbjct 1392 ACCGAGTGAGAAACTTGTTCATGTCGTTGAGAAGCTTCATTGCAAACCTTGCGGCAGTGG 1451
Query 1420 TGGAGTCATAATTCGTGCCGTTGGATCGTTTATTGTCGGGAATCAGTTTCTGATTTGTGG 1479
|||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||
Sbjct 1452 TGGAGTCATAATTCGTGCTGTTGGATCGTTTATTGTTGGAAATCAGTTTCTGATCTGTGG 1511
Query 1480 TGATGGAGTTCAAGCAGAAGGGCTTCCGAGTTTCAAAGATCTCGGGTTCGATGTCGCAAG 1539
||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1512 TGATGGAGTCCAAGCAGAAGGGCTTCCGAGTTTCAAAGATCTTGGCTTCGATGTCGCAAG 1571
Query 1540 TAGACGTGTTGGTCGATTTCAAGAACAGTTTGTGGGTGAATCTGGTGATCTTATTGGAAA 1599
|||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1572 TAGACGTGTTGGCCGATTTCAAGAACAGTTTGTTGTTGAATCTGGTGATCTTATTGGAAA 1631
Query 1600 GTATTTTATAGCTAAGCAAGAGCTTTATATTACAAACTTAGATTAGAGAAACACACATGA 1659
||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1632 GTATTTTCTTGCTAAGCAAGAGCTTTATATTACAAACTTAGATTAGATAAACACACATGA 1691
Query 1660 GAAAACTTTTGTTTTCTACTGTA-TA-A-TGTAACTATAAACATGTGTAATT 1708
|||||| |||||| ||||||||| || | ||||||||| ||| ||| |||||
Sbjct 1692 GAAAACGTTTGTTCTCTACTGTACTATAATGTAACTATGAACTTGTTTAATT 1743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84989522685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5