BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493949 Length=2747 Score E Sequences producing significant alignments: (Bits) Value AT5G40390.1 | Symbols: SIP1 | Raffinose synthase family protein... 4303 0.0 > AT5G40390.1 | Symbols: SIP1 | Raffinose synthase family protein | chr5:16161515-16165357 FORWARD LENGTH=2829 Length=2829 Score = 4303 bits (2330), Expect = 0.0 Identities = 2605/2735 (95%), Gaps = 30/2735 (1%) Strand=Plus/Plus Query 1 TTACATGTCGACCAATAAATCTATAAGTATATAATGACATTTCCAAACTTTCTTTCAATC 60 |||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||||||| Sbjct 19 TTACATGTCGACCAATAATTCTATAAGTATCTAATGACATTTCCTATCTTTCTTTCAATC 78 Query 61 CATAATCTTATCAAATAATCAAATTTGGGAAAGTTTTTAAGATTCATAATCTCTATAAAT 120 ||||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||| Sbjct 79 CATAATCTTATCATATAATCAAATTCGGGAAAGTTTTTAAGTTTCATAAACTCTATAAAT 138 Query 121 TACTCTCTACCATCTTAACCT-AAAAA-A----C-AT-C--T-T-C--AATCTT--TTAT 164 ||||||||||||||||||||| ||||| | | || | | | | |||||| ||| Sbjct 139 TACTCTCTACCATCTTAACCTAAAAAACATTCTCAATCCTTTGTCCAAAATCTTGCATAT 198 Query 165 CGGCAAAATGGCTCCACCGAGTTTAACCAAGTCCGATTCCGGTACCAACGGCGTTTACTT 224 ||||||||||||| | ||| |||| ||||||||||||||||||| ||| |||||| |||| Sbjct 199 CGGCAAAATGGCTTCGCCGTGTTTGACCAAGTCCGATTCCGGTATCAATGGCGTTGACTT 258 Query 225 TACCGGAAAACCTCTTTTCCGGTTAGAAGATTCCAATCTCTTAGCAAATGGTCAAGTCGT 284 |||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 259 TACC-GAAAA-----ATTCCGGTTAGAAGATTCCACTCTCTTAGCCAATGGTCAAGTCGT 312 Query 285 CTTAACCGATGTTCCGGTTAACGTTACTCTCACCACTTCACCTTACCTAACCGACAAAGA 344 |||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct 313 CTTAACCGATGTTCCGGTTAACGTTACTCTCACCTCTTCACCTTACTTAGTCGACAAAGA 372 Query 345 CGGCCTACCAATCGACGTCTCCGCCGGTTCATTCATCGGGTTTAACCTCGACGGAGAGCC 404 ||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 373 CGGTGTACCACTCGACGTCTCTGCCGGTTCATTCATCGGGTTTAACCTCGACGGAGAGCC 432 Query 405 CAAAAGCCACCACGTGGCATCCATCGGAAAACTCAAGAACATTCGTTTCATGAGCATATT 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 433 CAAAAGCCACCACGTGGCATCCATCGGAAAACTCAAGAACATTCGTTTCATGAGCATATT 492 Query 465 CCGTTTCAAGGTTTGGTGGACCACTCATTGGGTCGGATCAAACGGACGTGACATCGAGAA 524 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 493 CCGTTTCAAGGTTTGGTGGACTACTCATTGGGTCGGATCAAACGGACGTGACATCGAGAA 552 Query 525 CGAGACCCAAATCATCATTCTTGATCAATCCGCGTCGGATTCTGGATCCGGATCCGGGTC 584 |||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 553 CGAGACTCAAATCATCATTCTTGATCAATCCGGGTCGGATTCTGGACCCGGATCCGGGTC 612 Query 585 GGGTCGTCCTTATGTTCTCCTGTTACCTCTTCTTGAAGGCTCCTTCCGTTCATCTTTCCA 644 ||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||| Sbjct 613 GGGTCGTCCTTATGTTCTCTTGCTACCTCTTCTTGAAGGCTCCTTCCGTTCATCATTCCA 672 Query 645 ATCTGGAGAAGACGATGATGTGGCGGTCTGTGTCGAATCCGGGTCAACCCAAGTAACCGG 704 ||| |||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| Sbjct 673 ATCCGGAGAAGACGATGACGTGGCGGTCTGTGTCGAATCCGGGTCGACCGAAGTAACCGG 732 Query 705 GTCGGAGTTTCGTCAGATTGTGTATGTCCACGCCGGAGATGACCCGTTTAAGCTCGTGAA 764 |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| Sbjct 733 GTCGGAGTTTCGTCAGATTGTGTATGTCCATGCCGGGGATGACCCGTTCAAGCTCGTGAA 792 Query 765 GGACGCCATGAAAGTGATTAGGGTTCATATGAATACGTTCAAGCTTCTTGAAGAGAAATC 824 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 793 AGACGCCATGAAAGTGATTAGGGTTCATATGAATACGTTCAAGCTTCTTGAAGAGAAATC 852 Query 825 GCCGCCGGGAATCGTCGATAAGTTCGGGTGGTGCACTTGGGACGCTTTTTACTTGACGGT 884 |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 853 GCCGCCGGGAATTGTCGATAAATTCGGGTGGTGCACTTGGGATGCTTTTTACTTGACGGT 912 Query 885 GAATCCTGACGGAGTTCATAAAGGTGTTAAGTGTCTCGTCGACGGTGGTTGTCCTCCGGG 944 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 913 GAATCCTGACGGAGTTCATAAAGGTGTTAAGTGTCTCGTCGACGGTGGTTGTCCTCCGGG 972 Query 945 ATTGGTTCTTATCGACGACGGTTGGCAATCGATTGGACATGATTCCGATGGTATTGATGT 1004 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 973 ATTGGTTCTTATCGACGACGGTTGGCAATCGATTGGACATGATTCCGATGGTATTGATGT 1032 Query 1005 CGAAGGGATGAATATTACCGTCGCCGGTGAACAAATGCCTTGCAGGCTTCTGAAGTTTGA 1064 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1033 CGAAGGGATGAATATTACCGTCGCCGGTGAACAAATGCCTTGCAGGCTTCTGAAGTTTGA 1092 Query 1065 AGAGAACCACAAATTCAAAGACTACGTGTCTCCAAAAGATCAAAACGACGTCGGAATGAA 1124 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1093 AGAGAACCACAAATTCAAAGACTACGTTTCTCCAAAAGATCAAAACGACGTCGGAATGAA 1152 Query 1125 AGCTTTCGTCAGAGATCTGAAAGATGAATTCTCCACCGTTGATTACATCTACGTCTGGCA 1184 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1153 AGCTTTCGTCAGAGATCTGAAAGATGAATTCTCCACCGTTGATTACATCTACGTTTGGCA 1212 Query 1185 CGCACTTTGCGGTTACTGGGGAGGTCTCCGTCCCGAAGCTCCGACTCTTCCGCCGTCGAC 1244 ||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| Sbjct 1213 CGCACTTTGCGGTTACTGGGGAGGTCTCCGTCCTGAAGCTCCGGCTCTGCCGCCGTCGAC 1272 Query 1245 TATTATCCGGCCAGAGCTCTCTCCAGGACTTAAACTCACAATGGAAGATCTCGCCGTCGA 1304 ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1273 CATTATCCGGCCCGAGCTCTCTCCAGGACTTAAACTAACAATGGAAGATCTCGCCGTCGA 1332 Query 1305 TAAGATCATTGAGACCGGAATCGGACTTGTCTCGCCGGACTTGGCGAAAGAGGTCTACGA 1364 ||||||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||||| Sbjct 1333 TAAGATCATAGAGACCGGAATCGGATTTGCCTCGCCGGACTTGGCGAAAGAGTTCTACGA 1392 Query 1365 AGGTCTTCACTCTCATCTTCAAAACGCCGGTATTGACGGCGTTAAAGTTGATGTCATCCA 1424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1393 AGGTCTTCACTCTCATCTTCAAAACGCCGGTATTGACGGCGTTAAAGTTGATGTCATCCA 1452 Query 1425 CATATTGGAGATGTTGTGCGAGAAATATGGCGGGAGAGTTGACTTGGCCAAAGCTTACTT 1484 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1453 CATATTGGAGATGTTATGCCAGAAATATGGCGGGAGAGTTGACTTGGCCAAAGCTTACTT 1512 Query 1485 CAAGGCGCTAACGTCGTCAGTGAATAAGCATTTTAATGGTAACGGCGTTATCGCCAGCAT 1544 ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1513 CAAGGCGTTAACGTCGTCAGTGAATAAGCATTTTAACGGTAACGGCGTTATCGCCAGCAT 1572 Query 1545 GGAGCACTGTAATGACTTCATGTTCCTTGGAACTGAAGCCATCGCTCTTGGTCGTGTCGG 1604 |||||| || |||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct 1573 GGAGCATTGCAATGACTTTATGTTCCTTGGAACTGAAGCCATCTCTCTTGGTCGTGTCGG 1632 Query 1605 TGATGACTTTTGGTGCACGGATCCATCAGGCGATCCAAACGGTACGTTTTGGCTACAAGG 1664 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1633 TGATGACTTTTGGTGCACGGATCCATCAGGCGATCCAAACGGTACGTTTTGGCTACAAGG 1692 Query 1665 ATGTCACATGGTCCACTGTGCATACAACAGTCTCTGGATGGGAAATTTCATTCAGCCTGA 1724 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1693 ATGTCACATGGTCCACTGTGCATACAACAGTCTCTGGATGGGAAATTTCATTCAGCCTGA 1752 Query 1725 TTGGGACATGTTTCAGTCCACTCATCCTTGTGCTGAGTTCCATGCTGCTTCTCGAGCCAT 1784 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1753 TTGGGACATGTTTCAGTCCACACATCCTTGTGCTGAGTTCCATGCTGCTTCTCGGGCCAT 1812 Query 1785 ATCGGGTGGGCCGATTTACATCAGTGATTGTGTGGGCAAGCATGATTTCGATCTCTTGAA 1844 || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1813 TTCCGGTGGGCCGATTTACATCAGTGATTGTGTGGGCAAGCATGATTTTGATCTCTTGAA 1872 Query 1845 GCGTCTAGTTTTGCCCAACGGTTCGATTTTGAGGTGTGAGTACTATGCTCTCCCAACTCG 1904 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1873 GCGTCTTGTTTTGCCCAACGGTTCGATTTTGAGGTGTGAGTACTATGCTCTCCCAACTCG 1932 Query 1905 TGACCGCCTATTTGATGATCCTCTTCATGATGGCAAAACCATGCTCAAGATTTGGAACTT 1964 |||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1933 TGACCGTCTCTTTGAGGATCCTCTTCATGATGGCAAAACCATGCTCAAGATTTGGAACTT 1992 Query 1965 GAACAAGTACACTGGAGTTATTGGAGCATTCAACTGTCAAGGAGGAGGATGGTGCAGAGA 2024 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1993 GAACAAGTACACTGGAGTTATTGGAGCATTCAACTGTCAAGGAGGAGGATGGTGCAGAGA 2052 Query 2025 AACCAGACGCAACCAATGTTTCTCTGAATGCGTTAACACGCTAACTGCCACAACAAGCCC 2084 ||||||||| ||||||||||||||||||||||| |||||| |||| ||||| |||||||| Sbjct 2053 AACCAGACGTAACCAATGTTTCTCTGAATGCGTCAACACGTTAACCGCCACCACAAGCCC 2112 Query 2085 TAAAGACGTTGAATGGAACAGTGGAAGCAGCCCAATCTCCATTGCAAACGTTGAAGAGTT 2144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2113 TAAAGACGTTGAATGGAACAGTGGAAGCAGCCCAATCTCCATTGCAAACGTTGAAGAGTT 2172 Query 2145 TGCTTTGTTCTTGTCTCAATCCAAGAAGCTTGTGTTGTCTGGACTAAATGATGATCTCGA 2204 ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || Sbjct 2173 TGCTTTGTTCTTGTCTCAATCCAAGAAGCTTTTGTTGTCTGGACTAAACGATGATCTTGA 2232 Query 2205 GCTCACTTTAGAGCCTTTCAAGTTTGAGCTGATCACTGTCTCTCCTGTTGTGACCATTGA 2264 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2233 GCTGACTTTGGAGCCTTTCAAGTTTGAGCTGATCACTGTCTCTCCTGTTGTGACCATTGA 2292 Query 2265 GGGTAATTCAGTCCGGTTTGCTCCGATTGGACTGGTTAACATGCTAAACACAAGCGGTGC 2324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2293 GGGTAATTCAGTCCGGTTTGCTCCGATTGGACTGGTTAACATGCTAAACACAAGCGGTGC 2352 Query 2325 GATCCGGTCTCTGGTGTATAATGATGAAACTGTTCAGATCGGAGTTTTTGGTGCGGGAGA 2384 |||||||||| ||||||||||||||||| ||||| || |||||||||||||||| ||||| Sbjct 2353 GATCCGGTCTTTGGTGTATAATGATGAATCTGTTGAGGTCGGAGTTTTTGGTGCCGGAGA 2412 Query 2385 GTTTAGGGTTTATGCATCGAAAAAACCTGAGAGCTGCTTAATTGATGGTGAAGTTGTTGA 2444 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2413 GTTTAGGGTTTATGCATCGAAAAAACCTGTGAGCTGCTTAATTGATGGTGAAGTTGTTGA 2472 Query 2445 GTTTGGTTATGAAGACTCAATGGTGATGGTGCAAGTGCCTTGGTCTGGTCCAGAGGGTTT 2504 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 2473 GTTTGGTTATGAAGACTCAATGGTGATGGTGCAAGTCCCTTGGTCTGGTCCAGATGGTTT 2532 Query 2505 GACTTCTATTGAGTATTTGTTTTAGAGAATTTGAAGGTCCTTATTTGTTTCCTTCTAAAC 2564 | |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 2533 GTCTTCTATTCAGTATTTGTTTTAGAGATTTTGAAGGTCCTTATTTGTTTCCTTCTTAAC 2592 Query 2565 TCCGTACCGTTCGTTGAGTTTTCCAAAGAACTCCGAGCCGttttttttATATGGTTT-TC 2623 |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | Sbjct 2593 TCCGTACCGTTCGTTGAGTTTTTGAAAGAACTCCGAGCCGTTTTTT--ATATGGTTTCT- 2649 Query 2624 GAGAGTGAACAATTTATGTTGGGtttttttttgtcaaacaatttatgttggcttttttat 2683 |||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 2650 GAGAGTAAACAATTTATGTTGG-TTTTTTTTTGTCAAACA-TTTATGTTGGCTTTTTTAT 2707 Query 2684 ttgaggatttt-tttt-ATCAGTGGTAGAATCTTT 2716 ||||||||||| |||| |||| ||||||||||||| Sbjct 2708 TTGAGGATTTTCTTTTTATCATTGGTAGAATCTTT 2742 Score = 60.2 bits (32), Expect = 1e-07 Identities = 32/32 (100%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 2716 TTTTCATAATTTGTGACAGAATTGTTATCAAC 2747 |||||||||||||||||||||||||||||||| Sbjct 2783 TTTTCATAATTTGTGACAGAATTGTTATCAAC 2814 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 136454084960 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5