BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493975
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03170.1 | Symbols: | AP2/B3-like transcriptional factor fa... 804 0.0
AT1G20600.1 | Symbols: | AP2/B3-like transcriptional factor fa... 785 0.0
> AT4G03170.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr4:1400832-1401584 FORWARD LENGTH=753
Length=753
Score = 804 bits (435), Expect = 0.0
Identities = 567/627 (90%), Gaps = 24/627 (4%)
Strand=Plus/Plus
Query 73 gaagaagatacagatgatgaagaggatatagat---ga--tga-agacgat-acaga-tg 124
||||| |||| |||||||||||| ||||||||| || | | ||| ||| | ||| |
Sbjct 106 GAAGAGGATATAGATGATGAAGACGATATAGATGACGAGGTTATAGATGATGA-AGACT- 163
Query 125 atgaGGTTGCGTCGAC-TCCATTATTACAA-ATAAGCCAAAG-TCGTCAAAAGCAGTCTA 181
||||||||||||| | ||||||||||||| | ||||| ||| | ||||||||||||||
Sbjct 164 ATGAGGTTGCGTC-CCTTCCATTATTACAAGA-AAGCC-AAGCTAATCAAAAGCAGTCTA 220
Query 182 GGAAGAGGGAAGAA-AAATCTGACAAAAATCAACCTAAGAGGGTTAAAAAACATAACATC 240
|| ||||||||||| ||| |||| |||||||||||||||||| |||| ||||| |||||
Sbjct 221 GGGAGAGGGAAGAAGAAA-CTGAAAAAAATCAACCTAAGAGGTTTAAGAAACAGAACATG 279
Query 241 ATGAAAATAAATATCGATGACTTTTCAGAAGAAACTCTGAGGTCAATTGAGGTATGGTAC 300
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 280 ATGAAAATAAATATCCATGACTTTTCAGAAGAAACTCTGAGGTTAATTGAGGTATGGTAC 339
Query 301 AAAGATGAACTCGATCCACAAGATATATTCGGCGATAATGAGGTGACGAAGCAATTCAGC 360
||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 340 GAAGCTGAACTCGATCCACAAGATATATTCGGCGATAATGAGGTGACGAGGCTATTCAGC 399
Query 361 AAACCGATAAAGAAGCAGTTGATGTCGAGCGACGTCGATAAAGATCAATGCAGGCTCATG 420
| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 400 AGACCGATAAAGAAGCAGTTGATGTCGAGCGATGTCGATAAAGATCAATGCATGCTCATG 459
Query 421 TTATCTAAGGAGCAAGTGAAGGAGAAGATGCTTCCTTTTCTAGAAGAATCAGAGGATCCG 480
||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 460 TTATCGAAGGAGCAAGTGAAGGAGAAGATGCTTCCTTTTCTAGAAGATTCAGAGAATCCG 519
Query 481 GTAAAGGG-AGTTGATGTTTCGGTGTATGGACCAGACGGGGCAGTTCAAAAGATGAAGTT 539
|||||||| | ||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 520 GTAAAGGGGA-TTGATGTTTCGGTGTATGGACCAGACGGGAAAGTTCAACAGATGGAGTT 578
Query 540 CAAGATTTGGAATGGGGATAAAACACCTGTGTTAACTTCAGGATGGAAGCAGTTTGTGGC 599
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 579 CAAGATGTGGAATGGGGATAAAACACCTGTGTTAACTTCAGGGTGGAAGCAGTTTGTGGA 638
Query 600 AGATTATGGTCTTGT-GATGACTTCTGATTTTATCATTGTTTGGATGTTTAGGCACATAA 658
||||||||||||| | |||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct 639 AGATTATGGTCTT-TCGATGACTTGTGATTTTGTCACTGTTTGGATGTTTAGGCACATAA 697
Query 659 AGACTCGAAA-CATTTGCTTTGCTATT 684
|||||||||| | ||||||||||||||
Sbjct 698 AGACTCGAAAGC-TTTGCTTTGCTATT 723
> AT1G20600.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr1:7133111-7134416 FORWARD LENGTH=893
Length=893
Score = 785 bits (425), Expect = 0.0
Identities = 508/548 (93%), Gaps = 6/548 (1%)
Strand=Plus/Plus
Query 90 tgaagaggatatagatgatgaagacgatacagatgatgaGGTTGCGTCGAC-TCCATTAT 148
||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct 96 TGAAGAGGATATAGATGATGAAGACGATATAGATGATGAGGTTGCGTC-CCTTCCATTAT 154
Query 149 TACAAATAAGCCAAAG-TCGTCAAAAGCAGTCTAGGAAGAGGGAAGAAAAATCTGACAAA 207
||| | |||||| ||| | ||||||||||||||||||||||||||||||| |||| |||
Sbjct 155 TACTAGTAAGCC-AAGCTAATCAAAAGCAGTCTAGGAAGAGGGAAGAAAAAACTGAAAAA 213
Query 208 AATCAACCTAAGAGGGTTAAAAAACATAACATCATGAAAATAAATATCGATGACTTTTCA 267
|||||||||||||||||||| || || ||||||||||||||||||||| |||||||||||
Sbjct 214 AATCAACCTAAGAGGGTTAAGAATCAGAACATCATGAAAATAAATATCCATGACTTTTCA 273
Query 268 GAAGAAACTCTGAGGTCAATTGAGGTA-TGGTACAAAGATGAACTCGATCCACAAGATAT 326
|||||||||||||||| |||||||| | |||||||| | ||||||||||||||| |||||
Sbjct 274 GAAGAAACTCTGAGGTTAATTGAGG-ATTGGTACAACGCTGAACTCGATCCACAGGATAT 332
Query 327 ATTCGGCGATAATGAGGTGACGAAGCAATTCAGCAAACCGATAAAGAAGCAGTTGATGTC 386
|||||||||| |||||||||||| || ||||||| ||||||||||||||||||||||||
Sbjct 333 ATTCGGCGATGATGAGGTGACGAGGCGATTCAGCCGACCGATAAAGAAGCAGTTGATGTC 392
Query 387 GAGCGACGTCGATAAAGATCAATGCAGGCTCATGTTATCTAAGGAGCAAGTGAAGGAGAA 446
|||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 393 GAGCGACGTCGATACAGATCAAAGCAGGCTCATGTTATCGAAGGAGCAAGTGAAGGAGAA 452
Query 447 GATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAGGGAGTTGATGTTTCGGTGTA 506
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 453 GATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAGGGGGTTGATGTTTCGGTGTA 512
Query 507 TGGACCAGACGGGGCAGTTCAAAAGATGAAGTTCAAGATTTGGAATGGGGATAAAACACC 566
|||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 513 TGGACCAGACGGGGAAGTTCAACAGATGAAGTTCAAGATGTGGAATGGGGATAAAACACC 572
Query 567 TGTGTTAACTTCAGGATGGAAGCAGTTTGTGGCAGATTATGGTCTTGTGATGACTTCTGA 626
||| ||||||||||| |||| ||||||||||||||||||||||||| ||| |||||||||
Sbjct 573 TGTCTTAACTTCAGGGTGGATGCAGTTTGTGGCAGATTATGGTCTTTTGAAGACTTCTGA 632
Query 627 TTTTATCA 634
|||| |||
Sbjct 633 TTTTGTCA 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35214137047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5