BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494030 Length=1901 Score E Sequences producing significant alignments: (Bits) Value AT5G39590.1 | Symbols: | TLD-domain containing nucleolar prote... 2876 0.0 AT5G39600.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosomal... 65.8 2e-09 > AT5G39590.1 | Symbols: | TLD-domain containing nucleolar protein | chr5:15851392-15853990 FORWARD LENGTH=1942 Length=1942 Score = 2876 bits (1557), Expect = 0.0 Identities = 1805/1922 (94%), Gaps = 27/1922 (1%) Strand=Plus/Plus Query 1 ATTTCCAATCATGGACTCCAATTTCTCTGATTATTCCCTCTAATTTCGAATTTTTGCATC 60 ||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 10 ATTTCTAATCATGGACTCCAATTTCTCTGATCATTCCCTCTAATTTCGGATTTTTGCATC 69 Query 61 TTCTCCGATCATCTTCACCACTATGGGTGCTTCATCTTCAACAGACAACAAAGAATCATC 120 ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 70 TTCTCCGATCATCTTCACCACTATGGGTGCTTCATCTTCTACAGACGACAAAGAATCATC 129 Query 121 GGAGAAACGAGAAATCGAAAGCCTTGCTGCTTCAACCGGAGCTCTTCCTCTGCTTCAACG 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 130 GGAGAAACGAGAAATCGAAAGCCTTGCTGCTTCAACCGGAGCTCTTCCTCTGCTTAAACG 189 Query 181 ATCTTTCTCCAAACT-TTCCGATTCTCAAACCAATACTGTTCCTTTTCAATCCTTCAAGC 239 ||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |||| Sbjct 190 ATCCTTCTCCAAACTCGT-CGATTCTCAAACCAATACTGTTCCTTTTCAATCCTTGAAGC 248 Query 240 AAAGTTTTGGTTTGAGCTACGATTCAATTACTACTGAAGGAG-GTCAAAAAGTTGGAGAC 298 ||||||||||||||||||||||| |||||||||||||||||| | ||||||||| |||| Sbjct 249 AAAGTTTTGGTTTGAGCTACGATACAATTACTACTGAAGGAGAG-CAAAAAGTTTCAGAC 307 Query 299 TTGTTTCCCAGATTGTTGGAGCATTTAGGATCATCTTTAGTAGATTTGTTCTTCGTGCCT 358 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 308 TTGTTTCCCAAATTGTTGGAGCATTTAGGATCATCTTTAGTAGATTTGTTCTTCGTGCCT 367 Query 359 GATAAAGAAGGATTGAGTTGGGTTGAGTTTGCTAGAGGTTATGTCAAATGTTGTGGAAGA 418 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 368 GATAAAGAAGGATTGAGTTGGGTTGAGTTTGCTAGTGGTTATGTCAAATGTTGTGGAAGA 427 Query 419 ATGTCGGCTTCGATGTCTTTCAACACTTTGTTGAGAGTTTATTATGTGACAGCTAAAAAT 478 |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 428 ATGTCGAATTCGATGTCTTTCAACACTTTGTTGAGAGTTTACTATGTGACAGCTAAAAAT 487 Query 479 GCAGGCTTTTCTCCAAAGCTTGAGTTTGAATCTGATGAAGCTGATTGTAAAATTAACGGG 538 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 488 GCAGGCTTTTCTCCAAAGCTTGAGTTTGAATCTGATGAAGCTGATTGTAAGATTAACGGG 547 Query 539 TCGATTTCGATTAGAGAATTGCTTGTGTTTCTGTGGATTTGTTGGACAATGTCGTGGGAT 598 ||||||||| |||| ||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct 548 TCGATTTCGGTTAGTGAATTGCTTGTGTTTCTTTGGATGTGTTGGACAATGTCTTGGGAT 607 Query 599 GGTCGAAGTTCTAAAGCCGCTGAAATG-AAGGGTTGTTTGTTTCTTCCGGATATAAGTCA 657 |||||||| |||||||| ||||||||| ||||| |||||||||||||||||||| ||||| Sbjct 608 GGTCGAAGCTCTAAAGCTGCTGAAATGAAAGGG-TGTTTGTTTCTTCCGGATATTAGTCA 666 Query 658 TTTGATTCTATCAGCAGTTGTGGCTTGCACTGATTCTGAATCTGGAAAGAGTTTGGATGT 717 |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| Sbjct 667 TTTGATTCTATCAGCAGTGGTGTCTTGCACTGATTCTGAATCTGGAAATAGTTTGGATGT 726 Query 718 TTGGGAGACTGATGTTTCTGGATTAGAACTCGAACTTCCTATCGGGAAATTCTTAACGTG 777 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 727 TTGGGAGACTGATGTTTCTGGTTTAGAACTTGAACTTCCTATCGGGAAATTCTTAACGTG 786 Query 778 GGCGTTGATGACAGTGCCTAGCCTCACTGAGTGCCTTTCTCACTTTTGTAATTCGAGACT 837 ||| ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| || Sbjct 787 GGCTTTGATGACAGTTCCTTGCCTCACTGAGTGCCTTTCTCACTTTTGTAACTCGAGGCT 846 Query 838 TCAAAATTTGACAAGTGTTGAGGATGGTTCTGGACCTTCGAAGTCCACTGCTGTAGATGA 897 ||||||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct 847 TCAAAATGTGACAAGTGCAGAGGATGGATCTGGACCTTCAAAGTCCACTGCTGTAGATGA 906 Query 898 TTCTGCGTCCAAGACAAGCGAAAACACCCTTCTAACATGTGGAAGGGCATGGGCAATTTC 957 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 907 TTCTGCGTCCAAGACAAGCGAAAACACCCTTCTAACATGTGGAAGGGCATGGGCGATTTC 966 Query 958 TTTGACGAGCAAAAGTATAATAAGCGAGGAGATTTTGAGCTCATGCTTTCCCTGCAATAG 1017 ||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| Sbjct 967 TTTGACGAGCAAAAGTACAATAAGCGAGGAGATTTTGAGCTCATGTTTTCCCGGCAATAG 1026 Query 1018 CAATGAAACC-AATGAACATCTTCTATACCGCTCATACCATCACGGGAAAGGCATGAATC 1076 | || |||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1027 CGGTG-AACCAAATGAACATCTTCTATACCGCTCATATTATCACGGGAAAGGCATGAATC 1085 Query 1077 GACTGTGGTCCAACGTTGAAGGGTATCATGCTCCGATACTAGTGATAATTTCTGCAAGCT 1136 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1086 GACTGTGGTCCAACGTTGAAGGGTATCATGCTCCTATACTAGTGATAATTTCTGCAAGTT 1145 Query 1137 GTGAAGTCGAACATGAGGGTACTTCAAGCAAGAGGAAGTGGGTTATTGGTGCAATCTTGC 1196 || ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| Sbjct 1146 GTAAAGTCGAACATGAGGCTACTTCAAGCGAGAGGAAGTGGGTCATTGGTGCAATCTTGC 1205 Query 1197 AGCATGGTTTTGAAAACAGGGACGCATTTTATGGAAGCTCTGGGAATTTGTTCTCCATTA 1256 |||| |||||||| ||||| || ||||||||||||||||||||||| ||||||||||| | Sbjct 1206 AGCAAGGTTTTGAGAACAGAGATGCATTTTATGGAAGCTCTGGGAACTTGTTCTCCATAA 1265 Query 1257 GTCCAGTCTTTCACGCATTCTCATCTTCTGGCAAGGAGAAAAACTTTGCGTATAGCCATC 1316 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1266 GTCCAGTCTTTCACGCATTCTCATCTTCTGGTAAGGAGAAAAACTTTGCGTATAGCCATC 1325 Query 1317 TGCATCCCT-CTGGTGGAGTCTACGACGCACGCCCCAAGCCTGTTGGAATTGGATTCGGG 1375 |||| |||| |||| ||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 1326 TGCA-CCCTGCTGGCGGAGTGTACGACGCACATCCCAAGCCTGTTGGAATTGGATTCGGG 1384 Query 1376 GGAACACTTGGAAACGAGAGAATTTTCATTGGTGAAGACTTTGCTAAAATCACAGTCCGT 1435 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1385 GGAACACTTGGAAATGAGAGAATTTTCATTGATGAAGACTTTGCTAAAATCACAGTCCGT 1444 Query 1436 CATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAGGGTTATTTA 1495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1445 CATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAGGGTTATTTA 1504 Query 1496 CCAGTAGAGGCTTTGGTTTTAGATATTGAAGCATGGGGGTTAGGTGGAAATAAGGCTAGG 1555 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 1505 CCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTAGGTGGAAACAAGGCTAGG 1564 Query 1556 GAAATTCAACAAGCATACCAGAAAAGAGAAGAGCTTTTCACTAACCAACGTCGAAAGATC 1615 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1565 GAAATTCAACAAAAATACCAGAAAAGAGAAGAGCTTTTCACTAACCAACGTCGAAAGATC 1624 Query 1616 GACTTGAAAACATTTACGAACTGGGAAGATTCACCTGAGAAAATGATGATGGATATGATG 1675 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1625 GACTTGAAAACGTTTACGAACTGGGAAGATTCACCTGAGAAAATGATGATGGATATGATG 1684 Query 1676 GGTAATCCTAATGCTCCTAGAAAGGAAGAGAGGTAATGAA-------CGA-A---G-TTT 1723 |||||||||||||||||||||||||||||||||||||||| ||| | | ||| Sbjct 1685 GGTAATCCTAATGCTCCTAGAAAGGAAGAGAGGTAATGAATGAAAGACGAGAACTGGTTT 1744 Query 1724 GATATATATACACACATACGTTTTTGTCTGT-AAAATATATAAGCAAGAAACTCTTCTGC 1782 |||||||| ||||| ||||||| |||||| | |||||||||| ||||||||||||| ||| Sbjct 1745 GATATATACACACATATACGTTGTTGTCTCTTAAAATATATATGCAAGAAACTCTTTTGC 1804 Query 1783 TATTTATGTA-CTCGTGGATTCAATGTGTAAGTTATGTATACTATTGTTGCCCAAACTCG 1841 | || ||| | ||| ||||||||||||||||||||||||||||| ||||||| ||||| | Sbjct 1805 TGTTCATG-AGCTCTTGGATTCAATGTGTAAGTTATGTATACTAGTGTTGCCAAAACTTG 1863 Query 1842 AACCGGCCTGTTGATT--ATATCTGCCCATAAAAATTGGTTTTTATTCCCAGAGCTTCCA 1899 |||| ||| ||||||| |||| |||| |||||||||||||||||||||||||||||| | Sbjct 1864 AACCAGCCAGTTGATTTGATATTTGCCTATAAAAATTGGTTTTTATTCCCAGAGCTTCAA 1923 Query 1900 TA 1901 || Sbjct 1924 TA 1925 > AT5G39600.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr5:15853929-15855192 REVERSE LENGTH=781 Length=781 Score = 65.8 bits (35), Expect = 2e-09 Identities = 41/44 (93%), Gaps = 0/44 (0%) Strand=Plus/Minus Query 1858 ATATCTGCCCATAAAAATTGGTTTTTATTCCCAGAGCTTCCATA 1901 |||| |||| |||||||||||||||||||||||||||||| ||| Sbjct 780 ATATTTGCCTATAAAAATTGGTTTTTATTCCCAGAGCTTCAATA 737 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94126021875 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5