BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494049 Length=1561 Score E Sequences producing significant alignments: (Bits) Value AT1G17050.1 | Symbols: SPS2 | solanesyl diphosphate synthase 2 ... 2388 0.0 AT1G78510.1 | Symbols: SPS1 | solanesyl diphosphate synthase 1 ... 955 0.0 > AT1G17050.1 | Symbols: SPS2 | solanesyl diphosphate synthase 2 | chr1:5829080-5831343 FORWARD LENGTH=1591 Length=1591 Score = 2388 bits (1293), Expect = 0.0 Identities = 1479/1565 (95%), Gaps = 28/1565 (2%) Strand=Plus/Plus Query 1 ttttttattttttATATTTCCGAAAATTTTCCATACACACATCCAA--TCTCGCTCGTCA 58 ||||||||||||||| |||| |||||||| ||||||||||| |||| |||| ||||||| Sbjct 1 TTTTTTATTTTTTATTTTTCTGAAAATTTGCCATACACACACCCAATCTCTCTCTCGTCA 60 Query 59 G-C--------ACAAA-TTAACATTGGACTCTCAGTTTCCGAAGATTCTTCCCTTTGGAC 108 | | | ||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 61 GCCAAAAAGAAAAAAACTTAACATTGGACTCTCAGTTTCCGAAGATTCTTCTCTTTGGAC 120 Query 109 TCTTAGTTTCCGAAACTTATTA--A-CCGTCttttttttggtttttGGGTTTGCATAAAA 165 ||| |||||| ||||||||||| | ||||| ||||||||| ||||||||||| ||||| Sbjct 121 TCTCAGTTTCTGAAACTTATTATTAGCCGTC-TTTTTTTGG--TTTGGGTTTGCCTAAAA 177 Query 166 GTTGTCGTCACTTGTGGATTTT-GTCTGAGAAATGATGATGTCATGTCGGAATATAGACT 224 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 178 GTTGTCGTCACTTGTGGATTTTGGTCTGAGAAATGATGATGTCATGTCGGAATATAGACT 237 Query 225 TGGGTACGAGTGTTCTTGATCATTCTTGTAGCTCTTCTTCAACAAGTCGTCGATTCTTGT 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TGGGTACGAGTGTTCTTGATCATTCTTGTAGCTCTTCTTCAACAAGTCGTCGATTCTTGT 297 Query 285 TTGGGAATTGTTCCAAGAATGTTTGTATGATTGGTGGCAGAAGCTGTGCTGGAAATTTGG 344 |||| |||| ||| |||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 298 TTGGCAATTCTTCGAAGACCGTTTGTATGATTGGTGGCAGAAGCTGTGTTGGAAATTTGG 357 Query 345 TCTTTCTCCGGCGAGATTTTGG-TACTTGTAGAGCGGTTCCGGCTAAATCCAAGGAGAAT 403 | |||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||| Sbjct 358 TATTTCTCCGGCGAGA-TTTGGCTACTTGCAGAGCTGTTCCGGCTAAATCCAAGGAGAAT 416 Query 404 TCTCTGGTCAATGGTATTGGTCAAGATAAAACAGTGATGCTCAATCTGAGGCAAGAGTCA 463 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 417 TCTCTGGTCAACGGTATTGGTCAAGATCAAACAGTGATGCTCAATCTGAGGCAAGAGTCA 476 Query 464 CCAAAGCCGATATCTTTGGAAAATCTGTTTGAGGTAGTAGCTGATGATTTGCAGAGGTTG 523 | |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| Sbjct 477 CGAAAGCCAATATCTTTGGAAACTCTGTTTGAGGTCGTAGCTGATGATTTGCAGAGGTTG 536 Query 524 AACGACAATCTTTTATCGATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCTGCTGAG 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 AACGACAATCTTTTATCGATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCTGCTGAG 596 Query 584 CAAATCTTCAGTGCTGGTGGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGA 643 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 CAAATCTTCAGCGCTGGTGGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGA 656 Query 644 GCCACTGCGGAATTAGCTGGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGGTGAG 703 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 657 GCCACTGCGGAATTAGCAGGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGGTGAG 716 Query 704 ATCATTGAGATGATTCACACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGAT 763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 ATCATTGAGATGATTCACACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGAT 776 Query 764 ATGCGAAGAGGAAAAGAAACGGTTCACGAGCTTTTCGGAACAAGAGTAGCTGTATTAGCT 823 ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 777 ATGCGAAGAGGAAGGGAAACGGTTCACGAGCTATTCGGAACAAGAGTAGCTGTATTAGCT 836 Query 824 GGAGATTTCATGTTTGCTCAAGCATCATGGTACTTAGCAAATCTCGAAAACCTCCAAGTC 883 || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 837 GGGGATTTCATGTTTGCTCAAGCATCATGGTACTTAGCAAATCTCGAAAACCTTGAAGTC 896 Query 884 ATTAAGCTCATAAGTCAGGTAATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCA 943 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 897 ATTAAGCTCATAAGTCAGGTGATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCG 956 Query 944 AGTTTATTCGATTGTGATGTCGAGCTTGATGACTACTTGCTAAAGAGTTACTACAAGACA 1003 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 957 AGTTTATTCGATTGTGATGTCAAGCTTGATGACTACATGCTAAAGAGTTACTACAAGACA 1016 Query 1004 GCTTCATTAGTAGCTGCAAGCACCAAAGGAGCTGCAATTTTCAGTAAAGTCGAAAGCGAG 1063 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 1017 GCTTCATTAGTAGCTGCAAGCACCAAAGGAGCAGCAATTTTCAGTAAAGTCGAAAGCAAG 1076 Query 1064 GTCGCAGAGCAAATGTATCAGTTCGGAAAGAATCTCGGTTTATCTTTTCAAGTAGTTGAT 1123 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1077 GTCGCAGAGCAAATGTATCAGTTCGGGAAGAATCTCGGTTTATCTTTTCAAGTAGTTGAT 1136 Query 1124 GACATTCTGGACTTCACTCAATCCACAGAGCAGTTAGGGAAACCTGCAGCTAATGACTTA 1183 |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| || Sbjct 1137 GACATTCTGGACTTCACTCAGTCCACAGAGCAGTTAGGTAAGCCTGCAGCTAATGACCTA 1196 Query 1184 GCCAAAGGTAACATAACAGCGCCAGTGATCTTCGCACTAGAGAATGAGCCGAGGCTAAGA 1243 ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1197 GCCAAAGGTAACATAACGGCGCCAGTGATCTTCGCGCTAGAGAATGAGCCAAGGCTAAGA 1256 Query 1244 GAGATCATTGAGTCTGAGTTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTT 1303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 GAGATCATTGAGTCTGAGTTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTT 1316 Query 1304 AGAAATCGCGGTGGGATCAAGAAAGCTCAAGAATTGGCTAAGGAGAAAGGTGAGCTTGCG 1363 ||||||||||||||||||||||||||||||||||| || |||||||||| ||| |||||| Sbjct 1317 AGAAATCGCGGTGGGATCAAGAAAGCTCAAGAATTAGCAAAGGAGAAAGCTGAACTTGCG 1376 Query 1364 TTAAAGAATCTGAATTGTCTTCCGAGAAGTGGTTTCAGATCGGCTCTTGAGGATATGGTG 1423 ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1377 TTAAAGAATTTGAATTGTCTTCCTAGGAGTGGTTTCAGATCGGCTCTTGAGGATATGGTA 1436 Query 1424 ATGTTTAATCTTGAAAGGATTGATTAGCTTCAAAGGGTATTTGGCAGAGGAAACTGTAAC 1483 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1437 ATGTTTAATCTTGAAAGGATTGATTAGTTTCAAAGGGTATTTGGCAGAGGAAACTGTAAC 1496 Query 1484 A-C--TCTTTACTTGTTTCAAA-CTTCAAACACAGAttttttttt--ACTGTATGTCACA 1537 | | |||||||||||| |||| |||||||||||||||||||||| ||||||||||| | Sbjct 1497 AACACTCTTTACTTGTT-CAAAACTTCAAACACAGATTTTTTTTTTTACTGTATGTCATA 1555 Query 1538 AAGGA 1542 | ||| Sbjct 1556 ATGGA 1560 > AT1G78510.1 | Symbols: SPS1 | solanesyl diphosphate synthase 1 | chr1:29535285-29537417 REVERSE LENGTH=1600 Length=1600 Score = 955 bits (517), Expect = 0.0 Identities = 906/1093 (83%), Gaps = 30/1093 (3%) Strand=Plus/Plus Query 376 AGCGGTTCCGGCTAAATCCAAGGAGAAT-TCTCTGGTCAATGGTATTGGTCAAGATAAAA 434 |||||| || | ||||| |||||| || ||| || ||||||||||||||||| | ||| Sbjct 401 AGCGGTGCCAACGAAATCAAAGGAG-ATCTCTTTGCTCAATGGTATTGGTCAATCTCAAA 459 Query 435 CAGTGATG-CTCAATCTGAGGCAAGAGTCACCAA-AGCCGATATCTTTGGAAAATCTGTT 492 |||||| | | || ||| ||||||||| || |||| || || |||| | |||||| Sbjct 460 CAGTGA-GTTTTGATTTGAAACAAGAGTCA-AAACAGCCTATTTCGTTGGTGACTCTGTT 517 Query 493 TGAGGTAGTAGCTGATGATTTGCAGAGGTTGAACGACAATCTTTTATCGATTGTTGGTGC 552 |||| ||||||||| |||| |||||| ||||| |||||||||||||||||||||||||| Sbjct 518 TGAGCTAGTAGCTGTTGATCTGCAGACTTTGAATGACAATCTTTTATCGATTGTTGGTGC 577 Query 553 AGAAAATCCGGTTTTGATATCTGCTGCTGAGCAAATCTTCAGTGCTGGTGGCAAGAGGAT 612 ||||||||||||||||||||||| |||||||| || ||| | |||||||| || || || Sbjct 578 GGAAAATCCGGTTTTGATATCTGCGGCTGAGCAGATTTTCGGAGCTGGTGGTAAAAGAAT 637 Query 613 GAGACCGGGTTTGGTATTCCTTGTATCACGA-GCCACTGCGGAATTAGCTGGCTTAAAGG 671 ||||||||||||||||||||||||||||| | ||||| ||||||||||| ||| |||||| Sbjct 638 GAGACCGGGTTTGGTATTCCTTGTATCAC-ATGCCACGGCGGAATTAGCAGGCCTAAAGG 696 Query 672 AACTTACAGTAGAACATCGGCGTTTAGG-TGAGATCATTGAGATGATTCACACCGCAAGT 730 |||| ||| |||||| |||||||| || ||||||||| |||||||| ||||| ||||| Sbjct 697 AACTAACAACAGAACACCGGCGTTT-GGCTGAGATCATCGAGATGATACACACTGCAAGC 755 Query 731 TTGATACACGATGATGTGTTAGACGAAAGTGATATGCGAAGAGGAAAAGAAACGGTTCAC 790 ||||||||||| |||||||||||||| ||||| |||||||||||||| ||||| ||||| Sbjct 756 TTGATACACGACGATGTGTTAGACGAGAGTGACATGCGAAGAGGAAAGGAAACAGTTCAT 815 Query 791 GAGCTTTTCGGAACAAGAGTAGCTGTATTAGCTGGAGATTTCATGTTTGCTCAAGCATCA 850 ||||||||||| ||||||||||| || |||||||||||||||||||||||||||| ||| Sbjct 816 GAGCTTTTCGGCACAAGAGTAGCGGTGCTAGCTGGAGATTTCATGTTTGCTCAAGCGTCA 875 Query 851 TGGTACTTAGCAAATCTCGAAAACCTCCAAGTCATTAAGCTCATAAGTCAGGTAATCAAA 910 |||||||||||||||||||| || || |||| ||||||||||| |||||||| |||||| Sbjct 876 TGGTACTTAGCAAATCTCGAGAATCTTGAAGTTATTAAGCTCATCAGTCAGGTGATCAAA 935 Query 911 GATTTTGCAAGCGGTGAGATAAAGCAAGCATCAAGTTTATTCGATTGTGATGTCGAGCTT 970 || ||||||||||| ||||||||||| || || || ||||| || || || | |||| Sbjct 936 GACTTTGCAAGCGGAGAGATAAAGCAGGCGTCCAGCTTATTTGACTGCGACACCAAGCTC 995 Query 971 GATGACTACTTGCT-AAAGAGTTACTACAAGACAGCTTCATTAGTAGCTGCAAGCACCAA 1029 || || ||||| || ||| |||| |||||||||||| || ||||| ||||| |||||||| Sbjct 996 GACGAGTACTTACTCAAA-AGTTTCTACAAGACAGCCTCTTTAGTGGCTGCGAGCACCAA 1054 Query 1030 AGGAGCTGCAATTTTCAGTAAAGTCGAAAGC--GAGGTCG-CAGAGCAAATGTATC-AGT 1085 ||||||||| |||||||| | ||| || || || || | |||| |||||||| | ||| Sbjct 1055 AGGAGCTGCCATTTTCAGCAGAGTTGA--GCCTGATGT-GACAGAACAAATGTA-CGAGT 1110 Query 1086 TCGGAAAGAATCTCGGTTTATCTTTTCA-AGTAGTTGATGACATTCTGGACTTCACTCAA 1144 | || |||||||||||| | ||||| || | |||||||||| ||| |||| |||||||| Sbjct 1111 TTGGGAAGAATCTCGGTCTCTCTTTCCAGA-TAGTTGATGATATTTTGGATTTCACTCAG 1169 Query 1145 TCCACAGAGCAGTTAGGGAAACCTGCAGCTAATGACTTAGCCAAAGGTAACATAACAGCG 1204 || ||||||||| | ||||| || |||| | ||| || || ||||||||| ||||||| Sbjct 1170 TCGACAGAGCAGCTCGGGAAGCCAGCAGGGAGTGATTTGGCTAAAGGTAACTTAACAGCA 1229 Query 1205 CCAGTGATCTTCGCACTAGAGAATGAGCCGAGGCTAAGAGAGATCATTGAGTCTGAGTTT 1264 || ||||| ||||| || |||| ||||| ||||||||||||||||||||||| |||||| Sbjct 1230 CCTGTGATTTTCGCTCTGGAGAGGGAGCCAAGGCTAAGAGAGATCATTGAGTCAGAGTTT 1289 Query 1265 TGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTTAGAAATCGCGGTGGGATCAAG 1324 |||||| | || || || ||||||||||||||| || | ||| | || ||||| ||| Sbjct 1290 TGTGAGGCGGGTTCTCTGGAAGAAGCGATTGAAGCGGTGACAAAAGGTGGGGGGATTAAG 1349 Query 1325 AAAGCTCAAGAATTGGCTAAGGAGAAAGGTGA-G-CTTGCGT-TAAAGAATCTGA-ATTG 1380 | ||| ||||||||||||| |||||||| ||| | | || | |||||||||| | | || Sbjct 1350 AGAGCACAAGAATTGGCTAGGGAGAAAGCTGATGAC--GC-TATAAAGAATCT-ACAGTG 1405 Query 1381 TCTTCCGAGAAGTGGTTTCAGATCGGCTCTTGAGGATATGGTGATGTTTAATCTTGAAAG 1440 ||| || ||||||| ||||| |||||||| || ||||||||| ||| ||| || ||||| Sbjct 1406 TCTACCTCGAAGTGGCTTCAGGTCGGCTCTAGAAGATATGGTGTTGTATAACCTCGAAAG 1465 Query 1441 GATTGATTAGCTT 1453 |||||||||||| Sbjct 1466 AATTGATTAGCTT 1478 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77057836575 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5