BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494079
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39090.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1895 0.0
AT5G39050.1 | Symbols: | HXXXD-type acyl-transferase family pr... 664 0.0
> AT5G39090.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:15643603-15645116 FORWARD LENGTH=1514
Length=1514
Score = 1895 bits (1026), Expect = 0.0
Identities = 1248/1356 (92%), Gaps = 12/1356 (1%)
Strand=Plus/Plus
Query 2 AAAAAATGAGTCCATCACTAAACATGATCCACGTGTCACGAGTCACACCTTCCAACTCTA 61
||||||||| ||||||||||||| | |||||||||||||||||||| || || |||||||
Sbjct 5 AAAAAATGAATCCATCACTAAACTTCATCCACGTGTCACGAGTCACGCCATCAAACTCTA 64
Query 62 ACTCGTCCGAGTCACTTACTCTCCCGCTCACCTTCTTTGACCTTCTATGGCTCAAACACA 121
||||||| | |||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 65 ACTCGTCGGCGTCACTCACTCTCCCGCTCACTTTCTTTGACCTTCTCTGGCTCAAACACA 124
Query 122 AAGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGTAACTCG-TCCTTTCTTCGAA 180
|||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||
Sbjct 125 AAGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGTAAATCGCTC-TTTATTCGAC 183
Query 181 TTAGTCATCGTCCCCAAcctcaaatcctctctctcctcatccctctctcactatctccca 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 184 TCAGTCATCGTCCCCAACCTCAAATCCTCTCTCTCCTCATCCCTCTCTCACTACCTCCCA 243
Query 241 ctcGCCGGCCAAATCCTCTGGGAGTCACTTGATCCAAAACC-AAACATCGTCTACTCACC 299
||||||||||| ||| ||||||| ||| |||||||||||| ||| ||||||||| | ||
Sbjct 244 CTCGCCGGCCATATCATCTGGGAACCACATGATCCAAAACCGAAA-ATCGTCTACAC-CC 301
Query 300 AAA-CGATACCGTTTCATTCACCGTCGCCGAGTCCAACGCCGATTTCTCTCGTTTAACAG 358
||| ||| |||||||||||||||| || ||||| ||| | |||||||| | |||||| |
Sbjct 302 AAAACGACGCCGTTTCATTCACCGTAGCTGAGTCAAACTCGGATTTCTCCCTTTTAACCG 361
Query 359 GCAAAGAACCATTCTCCTCCAACGAGTTGCACCCATTAGTCCCCGAGTTACAAAACTCCG 418
| |||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 362 GAAAAGAACCTTTCTCCTCCACCGAGTTACACCCATTAGTCCCGGAGTTACAAAACTCCG 421
Query 419 ACGACTCGGCTTCCGTCATGTCGTTTCAAGTCACATTATTTCCAAACCAAGGGTTTTGCA 478
||||||| || | ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 422 ACGACTCAGCAGCAGTCGTGTCGTTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTGCA 481
Query 479 TCGGTGTCACCGCACACCATGCCGTTTCCGATGGAAAAACGACGACCACTTTTCTCAAAT 538
|||| || ||| |||||||||||||||| ||||| |||||||| ||||| ||||||||||
Sbjct 482 TCGGCGTAACCACACACCATGCCGTTTCTGATGGGAAAACGACAACCACGTTTCTCAAAT 541
Query 539 CTTGGGCTCACTTATGTAAACATCAAGATTCTTCTCTACCGGAGGATCTAATCCCGTTCT 598
|||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |
Sbjct 542 CTTGGGCTCACTTATGTAAACATCAAGACTCTTCTCTACCGGATGATCTAATTCCGTTTT 601
Query 599 ACGATCGTACGGTCATTAAAGGTCCACCGGAGATTGATACTAAAGTCTTGAAAATTTGGC 658
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 ACGATCGTACGGTCATAAAAGGTCCACCGGAGATTGATACTAAAGTCTTGAAAATTTGGC 661
Query 659 ACTCTATTGATAAACCAAAAAGCTTGAAGCTGTTACCGAAACCGGAGATAGATTCCGACG 718
|||||||| |||||||||||||||||||| ||||||||| |||||||||||| |||||||
Sbjct 662 ACTCTATTCATAAACCAAAAAGCTTGAAGTTGTTACCGAGACCGGAGATAGAATCCGACG 721
Query 719 TCGTTCGATACACATACGAACTCACTCGTGAAAATATCGAAAAGCTTCGTGAGAGACTCA 778
||||||||||||||| |||||||||||||||||| |||||||||||||| || | |||||
Sbjct 722 TCGTTCGATACACATTCGAACTCACTCGTGAAAACATCGAAAAGCTTCGAGATAAACTCA 781
Query 779 AGAGAGAGTCTTCTTC-TTCCTCCTCGCTTAGATTGTCAACGTTTGTGATTACGTTTTCG 837
|||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 782 AGAGAGAGTCTTCTTCGTTT-TCCTCGGTTAGATTGTCAACGTTTGTGATTACGTTTTCG 840
Query 838 TACATTTTCACGTGTTTAATCGGATCCGGAGGCGATGATCCGGATAGACCCGTCGGGTAT 897
||| |||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||
Sbjct 841 TACGTTTTCACGTGCTTAATAGGATCCGGAGGCGATGATCCGAATAGACCGGTCGGGTAT 900
Query 898 AGATTCGCGGTGGATTGTCGAAGCCTTATCGATGATCCACCGATTCCGTTAACTTATTTC 957
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 901 AGATTCGCGGTGGATTGTCGAAGGCTTATCGATGATCCACCGATCCCGTTGACTTATTTC 960
Query 958 GGAAACTGTGTTTACTCTGCTGTGAAAATCCCGCTA-ATGGCGGGGTTGTTTCTTGGTGA 1016
|||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 961 GGAAACTGTGTTTACTCTGCTGTGAAAATCCCGCTAGATG-CGGGGATGTTTCTTGGTGA 1019
Query 1017 ACAAGGATTT-GTGGCGGCTGCGAGATTGATCAGTGATTCGGTTGAGGAATTGGATTCAA 1075
|||||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1020 ACAAGG-TTTCGTGGTTGCTGCGAGATTGATTAGTGATTCGGTTGAGGAATTGGATTCAA 1078
Query 1076 ATGTGGCTTGGAAGATTCCAGAGCTTTTGGAAACGTGTGAGAATGCTCCAGTGGAGTCAC 1135
|||||||||||||||| || |||||||||||||||| |||||| ||||| ||||| ||||
Sbjct 1079 ATGTGGCTTGGAAGATACCGGAGCTTTTGGAAACGTATGAGAAAGCTCCTGTGGACTCAC 1138
Query 1136 AATTTGTGTCGGTTGCCGGGTCAACCCGGTTCGGTATGTACGGGTTGGATTTTGGGTGGG 1195
||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 1139 AATTTGTGTCGGTTGCCGGGTCAACCCGGTTTGGTATATACGGGTTGGATTTCGGGTGGG 1198
Query 1196 GAAAACCTTTTAAGTCGTTGTTGGTGTCGATTGATCAAAGAGGAAAGATATCAATGGCTG 1255
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1199 GAAAACCTTTTAAGTCGTTGTTGGTGTCGATTGATCAGAGAGGAAAGATATCAATTGCGG 1258
Query 1256 AGAGTAGAGATGGAAGTGGAGGTGTTGAGATTGGCTTCTCCCTCAAGAAACAAGAAATGA 1315
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1259 AGAGTAGAGATGGAAGTGGAGGTGTTGAGATTGGCTTCTCGCTCAAGAAACAAGAAATGA 1318
Query 1316 ATGTTTTGATTGATTTGCTTCATAAAGGAATCAAAT 1351
||||||||||||||||||| || || || || ||||
Sbjct 1319 ATGTTTTGATTGATTTGCTACACAAGGGGATAAAAT 1354
> AT5G39050.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:15634586-15636065 FORWARD LENGTH=1480
Length=1480
Score = 664 bits (359), Expect = 0.0
Identities = 568/667 (85%), Gaps = 22/667 (3%)
Strand=Plus/Plus
Query 5 AAAT-GAGTCCATCAC-TAAACATGATCCACGTGTCACGAGTCACACCTTCCAACTCTAA 62
|||| |||| |||||| |||| | ||| ||||| ||||||||||||| || ||||| |
Sbjct 24 AAATGGAGT-CATCACTTAAA-GTCATCGACGTGGCACGAGTCACACCATCAAACTCCGA 81
Query 63 CTCGTCCGAGTCACTTACTCTCCCGCTCACCTTCTTTGACCTTCTATGGCT-CAAAC-AC 120
||||||||||||||| |||||||| ||||||||||| ||||| || ||| | ||||| |
Sbjct 82 CTCGTCCGAGTCACTCACTCTCCCACTCACCTTCTTCGACCTCCTCTGG-TACAAACTTC 140
Query 121 AAAGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGTAACTCGTCCTTTCTTCGAA 180
| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||
Sbjct 141 -ACGCCGTCGAACGAGTCATCTTCTACAAACTCACCGACGCAAGTCGTCCTTTCTTTGAC 199
Query 181 TTAGTCATCGTCCCCAAcctcaaatcctctctctcctcatccctctctcactatctccca 240
| |||||||||||| ||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 200 TCAGTCATCGTCCCAAACCTCAAAACATCTCTCTCCTCATCCCTCTCTCACTACCTCCCA 259
Query 241 ctcGCCGGCCAAA-TCCTCTGGGAGTCACTTGATCCAAAACC-AAACATCGTCTACTCAC 298
|||||||| ||| || | ||||| |||||||||| ||||| ||| ||||||||| | |
Sbjct 260 CTCGCCGGA-AAACTCGTGTGGGAACCACTTGATCCCAAACCGAAA-ATCGTCTACACCC 317
Query 299 CAAACGATACCGTTTCATTCACCGTCGCCGAGTCCAACGCCGATTTCTCTCGTTTAACAG 358
||||||| ||||||||||||||||||||||||| ||||| || ||||| |||||||| |
Sbjct 318 CAAACGACGCCGTTTCATTCACCGTCGCCGAGTCAAACGCAGACTTCTCACGTTTAACCG 377
Query 359 GCAAAGAACCATTCTCCTCCAACGAGTTGCACCCATTAGTCCCCGAGTTACAAAACTCCG 418
|||||||||| ||| || ||| |||||| |||| ||||||||||||||||| |||||
Sbjct 378 GCAAAGAACCGTTCCCCACCACCGAGTTATACCCGTTAGTCCCCGAGTTACATGTCTCCG 437
Query 419 ACGACTCGGCTTCCGTCATGTCGTTTCAAGTCACATTATTTCCAAACCAAGGGTTTTGCA 478
||||||| ||||||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct 438 ACGACTCAGCTTCCGCCGTGTCGTTTCAAGTCACGTTATTTCCAAACCAAGGGTTTTGCA 497
Query 479 TCGGTGTCACCGCACACCATGCCGTTTCCGATGGAAAAACGACGACCA-CTTTTCTCAAA 537
|| | || | ||||| |||||||||| |||||||||||||| |||| |||| ||||||
Sbjct 498 TCAGCGTTAATGCACATCATGCCGTTTTAGATGGAAAAACGACAACCAACTTT-CTCAAA 556
Query 538 TCTTGGGCTCACTTATGTAAACATCAAGATTCTTCTCTACCGGAGGATCTAATCCC-GTT 596
|||||||| | | ||||||| | |||||||||| ||||||| ||||||||||||| |||
Sbjct 557 TCTTGGGCACGCACATGTAAAAACCAAGATTCTTTTCTACCGCAGGATCTAATCCCAGTT 616
Query 597 CTACGATCGTACGGTCATTAAAGGTCCACCGGAGATT-GATACTAAAG-TCTTGAAAAT- 653
||||||||||||||||| |||| |||| ||| || ||||| |||| |||| |||
Sbjct 617 -TACGATCGTACGGTCATAAAAGATCCAATGGAT-TTAGATAC-AAAGATCTT-AAACGC 672
Query 654 TTGGCAC 660
|||||||
Sbjct 673 TTGGCAC 679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66666323760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5