BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494081
Length=2100
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39040.1 | Symbols: ALS1, ATTAP2, TAP2 | transporter associa... 3295 0.0
> AT5G39040.1 | Symbols: ALS1, ATTAP2, TAP2 | transporter associated
with antigen processing protein 2 | chr5:15625578-15629802
FORWARD LENGTH=2198
Length=2198
Score = 3295 bits (1784), Expect = 0.0
Identities = 1933/2005 (96%), Gaps = 10/2005 (0%)
Strand=Plus/Plus
Query 1 AAACCCAAAACAAAAGTTGAGACCTTTTTTATTTTCTTTGAGATGGGTAACAAGAAACTG 60
|||||||||||||||||||||| | |||| | | ||| ||||||| ||||||||||||
Sbjct 45 AAACCCAAAACAAAAGTTGAGAAC-TTTTCA---TATTTCAGATGGGCAACAAGAAACTG 100
Query 61 TTGACTGGTGGGTCAAGCAAAACTTATGGTAGTGGTGGTAGTAGCTACAGAGATCCTCTG 120
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 101 TTGACTGGTGGGTCAAGCAAAACTCATGGTA---GTGGTAGTAGCTACAGAGATCCTCTG 157
Query 121 TTGCAGAATC---AGGATAAACCGAAAGCGAATGGAAGCGAAAATGGTTCAAATGATCTT 177
|||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 158 TTGCAGAATCAGGAGGATAAACCGAAAGCGAATGGAAGCGAGAATGGTTTGAATGATCTT 217
Query 178 GAGCATGGTGTTGTTGAGGCAGCAAATGTTGGATTTGGCAGAGTCTTTGCGTTGGCAAAG 237
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 218 GAGCATGGTGTAGTTGAGGCGGCAAATGTTGGATTTGGCAGAGTCTTTGCGTTGGCAAAG 277
Query 238 CCCGATGCGGGAAAGCTAGTGATTGGTACCATTGCTTTGTTGATAGGTTCAACAACTAAT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 CCCGATGCGGGAAAGCTAGTGATTGGTACCATTGCTTTGTTGATAGGTTCAACAACTAAT 337
Query 298 CTCCTTGTTCCAAAGTTTGGTGGGATGATTATAGACATTGTATCCAGAGATGTCAAGATG 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 338 CTCCTTGTTCCAAAGTTTGGTGGGATGATTATAGACATTGTATCCAGAGATGTCAAGACG 397
Query 358 CCTGAGCAGCAAACAGAATCCTTGATTGCTGTTAGAAATGCCGTTGTAGTCATTTTGCTT 417
|||||||||||||| ||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 398 CCTGAGCAGCAAACGGAATCCTTGATTGCTGTTAGAAACGCCGTAGTAATCATTTTGCTT 457
Query 418 ATCGTTGTAATTGGATCGATATGCACGGCTTTGCGAGCGTGGCTATTTAACTCTGCCAGC 477
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 458 ATCGTTGTAATCGGATCGATATGCACGGCTTTGCGAGCGTGGCTATTTAATTCTGCCAGT 517
Query 478 GAAAGAGTTGTGGCTCGACTGAGAAAGGATTTGTTCAAACACCTAATGCATCAGGAAATA 537
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 518 GAAAGAGTTGTGGCTCGACTGAGAAAGGATTTGTTCAGACACCTAATGCATCAGGAAATA 577
Query 538 GCATTTTATGATGTCACAAAAACCGGAGAACTCTTAAGTAGATTATCCGAAGACACCCAG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 GCATTTTATGATGTCACAAAAACCGGAGAACTCTTAAGTAGATTATCCGAAGACACCCAG 637
Query 598 ATCATAAAAAACGCTGCTACGACAAATCTTTCTGAAGCTCTTCGTAACGTAACAACTGCG 657
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 638 ATCATAAAAAACGCTGCTACTACAAATCTTTCTGAAGCTCTTCGTAACGTAACAACTGCG 697
Query 658 CTTATTGGAGTTGGTTTCATGTTTACATCATCTTGGAAATTAACATTGTTGGCGCTAGTA 717
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 698 CTTATAGGAGTTGGTTTCATGTTTACATCATCTTGGAAATTAACATTGTTGGCGTTAGTA 757
Query 718 GTAGTTCCGGTAATTTCAGTTGCTGTGAAACAGTTCGGACGCTATCTGCGTGAACTTTCA 777
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 758 GTAGTTCCGGTAATTTCAGTTGCTGTGAAACAGTTTGGTCGCTATCTACGTGAACTTTCA 817
Query 778 CACACAACTCAAGCTGCAGCTGCTGTTGCTGCATCAATTGCTGAGGAATCTTTTGGTGCA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 CACACAACTCAAGCTGCAGCTGCTGTTGCTGCATCAATTGCTGAGGAATCTTTTGGTGCA 877
Query 838 ATCCGAACTGTTAGATCTTTTGCGAAAGAAAGCTATATGGTATCACAATATTCCAAGAAA 897
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 GTCCGAACTGTTAGATCGTTTGCGAAAGAAAGCTATATGGTATCACAATATTCCAAGAAA 937
Query 898 GTTGATGAGACTCTGAAGCTAGGACTCAAACAAGCTGTACTTGTCGGATTGTTCTTCGGT 957
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 938 GTCGATGAGACTCTGAAGCTAGGACTCAAACAAGCTGTACTTGTCGGGTTGTTCTTCGGA 997
Query 958 GGACTAAACGCAGCTTTCACATTATCTGTTATTACGGTTGTTAGTTATGGAGCATACTTA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 GGACTAAACGCAGCTTTCACATTATCTGTTATTACGGTTGTTAGTTATGGAGCATACTTA 1057
Query 1018 ACAATATATGGTTCCATGACCGTTGGAGCACTCACTTCCTTCATTCTTTATAGCCTCACA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 ACAATATATGGTTCCATGACCGTTGGAGCACTCACTTCCTTCATTCTTTATAGCCTCACA 1117
Query 1078 GTTGGTTCATCGGTATCTTCTTTGTCGAGTTTGTACACAACTGCAATGAAAGCTGCAGGC 1137
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1118 GTTGGTTCATCGGTATCTTCTTTATCGAGTTTGTACACAACTGCAATGAAAGCTGCAGGC 1177
Query 1138 GCTAGTAGACGGGTTTTTCAGATCTTGGACCGTGTTTCTAGCATGTCAAGTTCAGGGGAT 1197
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 GCTAGTAGACGAGTTTTTCAGATCTTGGACCGTGTTTCTAGCATGTCAAGTTCAGGGGAT 1237
Query 1198 AAGTGTCCAGTCGGTGTTCCTGATGGAGATGTGGAACTAAATGATGTCTGGTTTGCTTAT 1257
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1238 AAGTGTCCAGTCGGTAATCCTGATGGAGATGTGGAATTAAATGATGTCTGGTTTGCTTAT 1297
Query 1258 CCTTCTCGCCCTAGTCACATGATACTCAAGGGAATATCATTGAGGTTGACACCAGGCTCA 1317
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1298 CCTTCTCGTCCTAGTCACATGATACTCAAGGGAATATCGTTGAGGTTGACACCAGGCTCA 1357
Query 1318 AAAGTTGCACTTGTAGGACCAAGTGGTGGAGGAAAAACGACCATAGCCAATTTGATTGAG 1377
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1358 AAAGTTGCACTAGTAGGACCAAGCGGTGGAGGAAAAACGACCATAGCTAATTTGATTGAG 1417
Query 1378 AGATTCTATGATCCTCTCAAGGGAAAGATCTTGCTTAATGGAGTTTCTTTAATGGAAATA 1437
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1418 AGATTCTATGATCCTCTCAAGGGAAAGATTTTGCTTAATGGAGTTTCTTTGATGGAAATA 1477
Query 1438 TCCCATCAATATCTTCACAAACAGATCAGCATTGTAAGTCAGGAACCAATTCTTTTCAAC 1497
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TCCCATCAATACCTTCACAAACAGATCAGCATTGTAAGTCAGGAACCAATTCTTTTCAAC 1537
Query 1498 TGTTCAGTGGAAGAGAACATCGCATATGGATTTGACGGTGAAGCTAGTTTTTCCGATATA 1557
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1538 TGTTCAGTGGAAGAGAACATCGCATATGGATTTGACGGTGAAGCTAGTTTTACCGATATA 1597
Query 1558 GAAAATGCAGCTAAAATGGCGAATGCACATGAGTTCATCGAAGCGTTTCCGGATAAGTAC 1617
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1598 GAAAATGCAGCGAAAATGGCGAATGCACACGAGTTCATTGAAGCGTTTCCGGATAAGTAC 1657
Query 1618 AACACTGTTGTTGGAGAACGTGGATTACGGCTCTCAGGAGGACAGAAGCAAAGGATTGCA 1677
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 AACACTGTTGTAGGAGAACGTGGATTACGGCTCTCAGGAGGACAGAAGCAAAGGATTGCA 1717
Query 1678 ATAGCGAGGGCTCTTCTTACAAACCCAAGTGTTTTGCTCCTTGATGAAGCCACAAGTGCA 1737
|| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1718 ATCGCGAGGGCGCTTCTTACAAACCCGAGTGTTTTGCTCCTTGATGAAGCCACGAGTGCA 1777
Query 1738 CTCGACGCTGAAAGCGAATATCTTGTTCAGGATGCGATGGACTCGTTGATGGCAGGAAGA 1797
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1778 CTCGACGCTGAAAGCGAATATCTTGTTCAGGATGCGATGGACTCGTTAATGGCGGGAAGA 1837
Query 1798 ACAGTGTTGGTGATAGCTCATAGGTTATCGACGGTCAAGACTGCAGACTGTGTGGCGGTT 1857
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 ACGGTGTTGGTGATAGCTCATAGGTTATCGACGGTCAAGACTGCAGACTGTGTGGCGGTT 1897
Query 1858 ATATCAGATGGTGAAGTGGCTGAGAAAGGCACTCATAATGAGCTTCTCAGCCTTAATGGA 1917
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1898 ATATCAGATGGTGAGGTGGCTGAGAAAGGCACTCATGATGAGCTTCTCAGCCTTAATGGA 1957
Query 1918 ATCTACACTAATCTTGTCAAGAGGCAGCTTCAGAGTTCTTCCTCTGTTACCAGCTTGTGA 1977
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1958 ATCTACACAAATCTTGTCAAGAGGCAGCTTCAGAGTTCTTCCTCTGTTACCACCTTGTGA 2017
Query 1978 GACAATATCATTCTTCTGACAACAA 2002
|| ||||||||||||||||| ||||
Sbjct 2018 GATAATATCATTCTTCTGACTACAA 2042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104115930330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5