BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494088 Length=966 Score E Sequences producing significant alignments: (Bits) Value AT5G38900.1 | Symbols: | Thioredoxin superfamily protein | chr... 1386 0.0 > AT5G38900.1 | Symbols: | Thioredoxin superfamily protein | chr5:15573505-15575618 REVERSE LENGTH=978 Length=978 Score = 1386 bits (750), Expect = 0.0 Identities = 901/973 (93%), Gaps = 13/973 (1%) Strand=Plus/Plus Query 1 TTTTGACTTCTCTCTCC----ATTAGAGGATTCACGATCTTCTTCCTCCATTCTTTTTCC 56 ||||||||| ||||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct 12 TTTTGACTTGTCTCTCCATTAATTAGAGGTTTCACGATCTTCTTCCTCCAATCTTTTTCC 71 Query 57 AGGAACACTCATAATGGCTGAGTCTGCAAGCAACACCGGTTCAAGAAAGCTTATTCAGAT 116 ||||| | |||| ||||||||||||||||||||||||| ||||| |||||| ||||| || Sbjct 72 AGGAAAAGTCATTATGGCTGAGTCTGCAAGCAACACCGCTTCAAAAAAGCTCATTCAAAT 131 Query 117 TGATGTGAGCTCGGATTCGGTGTGTCCATGGTGCTTTGTGGGCAAGAAGAATCTTGACAA 176 || || |||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 132 CGACGTAAGCTCGGATTCGGTGTGTCCATGGTGCTTTGTAGGAAAGAAGAATCTTGACAA 191 Query 177 AGCCATTGAAGCATCTAAAGATCAATACAACTTTGAGATTCGATGGCGTCCGTTTTTCCT 236 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 192 AGCTATTGAAGCATCTAAAGATCAATACAACTTCGAGATTCGATGGCGTCCGTTTTTCCT 251 Query 237 TGATCCATCTGCACCGAAAGACGGTGTGAGTAAGAAAGAGTTTTATCGACAGAAATATGG 296 ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 252 TGATCCATCTGCACCTAAAGAAGGTGTGAGTAAGAAAGAGTTTTATCTACAGAAATATGG 311 Query 297 AAACAGATATGAAGGAATGTTCGCCAGAATGTCCGAGATCTTTAAAGGTCTTGGATTAGA 356 |||||||||| |||||||||| || |||||||||||| |||||||||||||||| ||||| Sbjct 312 AAACAGATATCAAGGAATGTTTGCAAGAATGTCCGAGGTCTTTAAAGGTCTTGGCTTAGA 371 Query 357 GTTTGACACAGCCGGTCTCACAGGCAACAGTCTGGATAGTCATAGACTTATACATTACAC 416 |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 372 GTTTGACACAGCTGGTCTCACAGGAAACAGTCTGGATAGTCATAGACTTATACATTATAC 431 Query 417 CGGTAAACAAGCGCCGGACAAACAACATAAACTTGTTGAGGAATTGTTTATCGGTTACTT 476 |||||||||||||||||| || ||||||| ||||||||||||| |||||||||||||||| Sbjct 432 CGGTAAACAAGCGCCGGAGAAGCAACATACACTTGTTGAGGAACTGTTTATCGGTTACTT 491 Query 477 CACGCAGGGAAAGTTCATCGGTGACAGGGAGTTTTTGGTAGAGACGGCTAAAAAGGTTGG 536 ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct 492 TACGCAGGGAAAGTTCATCGGTGATAGAGAGTTTTTGGTAGAGACGGCTAACAAGGTTGG 551 Query 537 GATAGAAGGAGCAGAAGAATTCCTCTCAGACCCCAACAATGGACTCACAGAGGTGAAAGA 596 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 552 GATAGAAGGAGCAGAAGAATTCCTCTCAGACCCCAACAATGGAGTTACAGAGGTGAAAGA 611 Query 597 AGAACTGGCAAAGTATTCGCGAAATATCACCGGAGTTCCAAATTACACTATCAATGGGAA 656 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 612 AGAACTGGCAAAGTATTCGAAAAATATCACCGGAGTTCCAAATTACACTATCAATGGGAA 671 Query 657 GGTGAAACTGAGCGGCGCACAACCGCCGGAAACATTCCAGAGTGCGTTTAAAGCGGCCTC 716 |||||| ||||| || || |||||||| || ||||||||||||||||||||||||||||| Sbjct 672 GGTGAAGCTGAGTGGTGCGCAACCGCCCGAGACATTCCAGAGTGCGTTTAAAGCGGCCTC 731 Query 717 AGCTTGAAACACAAACAGTGAACTCAAGAGTTGTTGAAGTTTTACATCTATGGAGATAGT 776 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | Sbjct 732 GGCTTGAAACACAATCAGTGTACTCAAGAGTTGTTGAAGTTTTACATCTATGGAGATTCT 791 Query 777 CTGTTTCTGTTGTTTGAACTTTAAGTTATTGACTTTTCAA-GAAGTTGGTGTAATAA-AT 834 ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| || Sbjct 792 CTGTTTCTGTTGTTTGAGCTTTAAGTTATTGACTTTTCAAAGAAGTTGGTGTAATAAGAT 851 Query 835 TTGTTCTGTGAT-GGTTTGTCTAAATAATTCAGAGAAGTTGATTTCAAACAttcttcttc 893 || |||| | || ||||||||||| ||||||||||||||||||||||| || || |||| Sbjct 852 TT-TTCTTT-ATTGGTTTGTCTAA-TAATTCAGAGAAGTTGATTTCAAGCA--CT-CTTC 905 Query 894 ttcttcttGCTCTGATCTCAAAGCAATGTTCTAGATAACAAATTCTTGAAAGATTCAAAC 953 |||||||||||||||||||||| |||||||||||||||||| || ||||| ||||||||| Sbjct 906 TTCTTCTTGCTCTGATCTCAAAACAATGTTCTAGATAACAATTTTTTGAATGATTCAAAC 965 Query 954 TATTTTTCCTTCC 966 || |||||||||| Sbjct 966 TACTTTTCCTTCC 978 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47270332327 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5