BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494121

Length=2789
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G38560.1 | Symbols:  | Protein kinase superfamily protein | ...  4205    0.0  


> AT5G38560.1 | Symbols:  | Protein kinase superfamily protein 
| chr5:15439249-15443164 FORWARD LENGTH=2798
Length=2798

 Score = 4205 bits (2277),  Expect = 0.0
 Identities = 2649/2821 (94%), Gaps = 56/2821 (2%)
 Strand=Plus/Plus

Query  1     aaaaagaaactcaagtcaatgaagaaaaagactaaaaaatggctatgataaag-aaa-CA  58
             |||| |||||||||||||||||| |||||||| ||| ||| |||||||| ||| |||  |
Sbjct  1     AAAACGAAACTCAAGTCAATGAATAAAAAGACGAAACAAT-GCTATGAT-AAGAAAAGAA  58

Query  59    ACAACACTCGaaaaaaaaGCTCTTCTTTTTCTTCCGCACATGTCTGACTCTCTCATAAGC  118
             ||||||||||   |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  59    ACAACACTCG---AAAAAGTTCTTCTTTTTCTTCCGCACATGTCTGACTCTCTCATAAGC  115

Query  119   GTAAATCTCTCTGTCAAATATCTCTGACCAGAGAGACAGAGTTGCCTCCACGTTTGTCCA  178
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct  116   GTAAATCGCTCTGTCAAATATCTCTGACCAGAGAGACAGAGTTGCCTCCACGTTTCTTCA  175

Query  179   GACAAGACTCACGCTCTTCCCTTTCACCACATTCCCTTCTTCCATTTCTCAATCTCACTT  238
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  176   GACAAGACTCACGCTCTTCCCTTTCACCACATTCCCTTC-TCCATTTCTCAATCTCACTT  234

Query  239   AAGCTTCTCGATTCTTCTTCCTCCAATTTCGAATCTTCCAAGTGAAAAAAGCTCCAAAGT  298
              | ||||||||   ||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct  235   -ACCTTCTCGA---TTCTTGCTCCAATTTCGAATCTTCCGAGTGAAAAAAGCTTCAAAGT  290

Query  299   TTGGAACTTTCTACAGTTTCTTCATCTGGGCCTGCTCTGAATTTCGTTTGTAGCTTAATC  358
             |||||||||||||  |||| || ||||||| ||||||||| |||||| |||||||  || 
Sbjct  291   TTGGAACTTTCTAGTGTTTATTAATCTGGGTCTGCTCTGAGTTTCGTGTGTAGCTGCATA  350

Query  359   TGAGCTTAAAGTTCGAGTTTTTACTTCTGGGTATTGAAATTCTAGGGCTAGTGATTGAAG  418
             ||||||||||| |||||||||| | ||||||| ||| |||||||||||||||||||| ||
Sbjct  351   TGAGCTTAAAGCTCGAGTTTTTCCATCTGGGT-TTGGAATTCTAGGGCTAGTGATTGGAG  409

Query  419   ATTTTGGGAACTTAGGTTGA-TTTAGTAGGTTTGACTTCAGGTTGCGGAATTTAGGTTGA  477
             |||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  410   ATTTTGGGAATTTAGGTTGATTTTAGTAGGTTTGACTTCAGGTTGCGTAATTTAGGTTGA  469

Query  478   TTTTGATCTGATTTGTGGAATTAGGGTTTGTTTGTTCATAAAGCTTCAATTTTTGGCGTT  537
             |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct  470   TTTTGATCCGATTTGTGGAATTAGGGTTTGTTTGTTCACAAAGCTTCAATTTTTGGAGTT  529

Query  538   TAAATGGATCGATAACGAAGGTGTTAGAAGAAAGTTTGTTGCTTTAGATTCGTATACGAT  597
             ||||||||||||||||||  |||||||||||||||||| ||||| |||||||||| ||||
Sbjct  530   TAAATGGATCGATAACGACTGTGTTAGAAGAAAGTTTGCTGCTTCAGATTCGTATTCGAT  589

Query  598   AAAGAAATGAGTTTGGTTCCTCCTTTACCGATTTTATCGCCACCGTCGTCAAATTCTTCA  657
             | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  590   ATAGAAATGAGTTTGGTTCCTCCTTTACCGATTTTATCACCACCGTCGTCAAATTCTTCA  649

Query  658   ACTACCGCACCTCCTCCGTTACCGTCTCAGCCCACCACTCCATCTGCTCCACCTCCGGTT  717
             || || |||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct  650   ACAACTGCACCTCCTCCGTTACAGACTCAGCCCACCACTCCATCTGCTCCACCTCCGGTT  709

Query  718   ACACCACCTCCTTCTCCGCCGCAATCTCCTCCGCCGGTTGTATCATCATcaccaccacca  777
             ||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||
Sbjct  710   ACACCACCTCCTTCTCCGCCGCAATCTCCGCCGCCGGTTGTATCATCAT---CACCACCA  766

Query  778   ccaccggttgtttcgtcacctccaccgtcttcttctccaccaccgtcaccTCCCGTCGTT  837
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | 
Sbjct  767   CCACCGGTTGTTTCGTCACCTCCACCGTCTTCTTCTCCACCACCGTCACCTCCTGTCATC  826

Query  838   ACTTCACCTCCTCCCACCGTTGCTTCTTCCCCTCCACCTCCTGTGGTGATTGCTTCTCCT  897
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  827   ACTTCACCTCCTCCCACCGTTGCTTCTTCCCCTCCACCTCCTGTGGTGATTGCTTCCCCT  886

Query  898   CCTCCCTCTACTCCGGCGACAACACCACCAGCTCCTCCGCAAACTGTCTCACCTCCACCA  957
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  887   CCTCCCTCAACTCCGGCGACAACACCACCAGCTCCTCCGCAAACTGTCTCACCTCCACCG  946

Query  958   CCTCCTGATGCTTCTCCCTCACCTCCTGCACCAACAACAACAAACCCTCCTCCTAAACCT  1017
             ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct  947   CCTCCTGATGCTTCTCCATCACCTCCCGCACCAACAACAACAAATCCTCCTCCTAAACCT  1006

Query  1018  TCTCCTT---CGCC----G--------------CCGGGAGAAACACCTTCACCGCCTAAA  1056
             |||||||   ||||    |              |||||||||||||||||||||||||||
Sbjct  1007  TCTCCTTCACCGCCGGGAGAAACACCTTCACCACCGGGAGAAACACCTTCACCGCCTAAA  1066

Query  1057  CCTTct-c--c-a-t-caactccaacaacaaccacatctcctcctcctcctccagctatc  1110
             |||||| |  | | | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1067  CCTTCTCCGTCAACTCCAACTCCAACAACAACCACATCTCCTCCTCCTCCTCCAGCTACC  1126

Query  1111  tctgcttctcctccGTCTTCAAATCCAACTGATCCTTCTACTTTAGCTCCTCCTCCAACT  1170
             |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct  1127  TCTGCTTCTCCTCCGTCTTCAAATCCTACTGATCCTTCTACGTTAGCTCCTCCTCCAACT  1186

Query  1171  CCATTACCTGTTCTTCCCAGAGAGAAACCAATTGCTAAACCAACTGGACCATCTTCAAAC  1230
             |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  1187  CCATTACCTGTTGTTCCCAGAGAGAAACCAATTGCTAAACCAACTGGACCAGCTTCAAAC  1246

Query  1231  AATGGAAACAACACTATGCAGTCTGA-TTCATCAGGTAAGAGCGGAGTTGGTACTGGAGG  1289
             ||||||||||||||| ||| |||| | |||| ||||||| |||| |||||||||||||||
Sbjct  1247  AATGGAAACAACACTTTGCCGTCT-AGTTCACCAGGTAAAAGCGAAGTTGGTACTGGAGG  1305

Query  1290  TATTGTAGCTATTGGAGCGATAGTCGGATTGGTTTTTCTTAGCCTTTTTGTGTTGGGTGT  1349
             |||||||||||| |||| ||| || ||||||||||||||||||||||||||| |||||||
Sbjct  1306  TATTGTAGCTATCGGAGTGATTGTGGGATTGGTTTTTCTTAGCCTTTTTGTGATGGGTGT  1365

Query  1350  GTGGTTCACTCGGAAACGAAAGCGAAAGGACCCTGGAACCTTTGTTGGATACACTATGCC  1409
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1366  GTGGTTCACTCGGAAACGAAAGCGAAAGGACCCTGGAACCTTTGTTGGATACACAATGCC  1425

Query  1410  TCCTTCCGCTTATTCATCTCCTCAAGGCTCAGATGTAGTGCTCTTCAACTCGCATTCTTC  1469
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1426  TCCTTCCGCTTATTCATCTCCTCAAGGCTCAGATGTAGTGCTCTTCAACTCGCGTTCTTC  1485

Query  1470  AGCTCCTCCTAAGATGAGAAGCCATTCTGGTAGCGATTACATGTATGCGTCATCTGATTC  1529
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1486  AGCTCCTCCTAAAATGAGAAGCCATTCTGGTAGCGATTACATGTATGCGTCATCTGATTC  1545

Query  1530  AGGCATGGTTAGCAACCAAAGATCTTGGTTTTCATATGATGAATTATCTCAAGTTACAAG  1589
             |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct  1546  AGGCATGGTTAGCAACCAAAGATCATGGTTTTCATATGATGAGTTATCTCAAGTTACCAG  1605

Query  1590  TGGGTTCTCCGAGAAGAATCTTCTCGGTGAAGGAGGGTTTGGCTGTGTATACAAAGGCGT  1649
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1606  TGGGTTCTCCGAGAAGAATCTTCTCGGTGAAGGAGGGTTTGGCTGTGTATACAAAGGCGT  1665

Query  1650  TCTTGCAGACGGAAGGGAAGTGGCAGTTAAACAGTTGAAGATTGGTGGAAGTCAAGGAGA  1709
             |||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct  1666  TCTTTCTGACGGAAGGGAAGTGGCAGTTAAACAGTTAAAGATTGGTGGAAGCCAAGGGGA  1725

Query  1710  GAGAGAGTTCAAAGCAGAAGTTGAAATTATTTCTCGGGTTCATCACCGTCATTTGGTTAC  1769
             ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct  1726  GAGAGAGTTCAAAGCAGAAGTTGAAATCATTTCTCGGGTTCATCACCGCCATTTGGTTAC  1785

Query  1770  ATTAGTCGGTTATTGCATCTCGGAGCAACATAGGTTGCTTGTATATGATTATGTACCTAA  1829
             | |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1786  ACTAGTTGGTTATTGCATCTCAGAGCAACATAGGTTGCTTGTATATGATTATGTACCTAA  1845

Query  1830  CAACACTCTCCATTATCATCTCCATGCTCCAGGAAGACCGGTTATGACTTGGGAAACTCG  1889
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1846  CAACACTCTCCATTATCATCTCCATGCTCCAGGAAGACCAGTTATGACTTGGGAAACTCG  1905

Query  1890  GGTAAGGGTCGCTGCTGGTGCAGCTCGTGGAATCGCCTACTTACATGAAGACTGTCATCC  1949
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1906  GGTAAGGGTCGCTGCTGGTGCAGCTCGTGGAATCGCCTACTTACATGAAGACTGTCATCC  1965

Query  1950  CCGCATTATTCACCGTGACATTAAATCATCCAACATACTT-TTAGATAACAGCTTTGAAG  2008
             ||||||||||||||||||||| ||||| |||||||||||| || ||||||||||||||||
Sbjct  1966  CCGCATTATTCACCGTGACATAAAATCTTCCAACATACTTCTT-GATAACAGCTTTGAAG  2024

Query  2009  CCTTGGTTGCAGATTTTGGGCTTGCGAAAATAGCACAAGAACTGGATTTAAACACACACG  2068
             |||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct  2025  CCTTGGTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACACACG  2084

Query  2069  TCTCAACACGCGTAATGGGAACCTTTGGGTACATGGCTCCTGAATATGCAACAAGTGGAA  2128
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2085  TCTCAACGCGCGTAATGGGAACCTTTGGGTACATGGCTCCTGAATATGCAACAAGTGGAA  2144

Query  2129  AGCTGTCTGAAAAAGCGGATGTTTATTCGTATGGGGTAATACTGTTGGAGCTTATAACTG  2188
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  2145  AGCTGTCTGAAAAAGCAGATGTTTATTCGTATGGGGTAATACTGTTGGAGCTTATAACTG  2204

Query  2189  GCCGCAAACCTGTAGATACGTCTCAACCACTTGGTGATGAGAGCCTTGTTGAATGGGCAA  2248
             |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2205  GCCGTAAACCCGTAGATACGTCTCAACCACTTGGTGATGAGAGCCTTGTTGAATGGGCAA  2264

Query  2249  GACCCTTGCTGAGTCAAGCAATCGAAAACGAAGAATTCGACGAGCTAGTAGATCCGAGGC  2308
             ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  2265  GACCCTTGCTGGGTCAAGCAATCGAGAACGAAGAATTCGACGAGCTAGTAGATCCGAGGC  2324

Query  2309  TAGGGAACAACTTCATCCCGGGAGAGATGTTCAGAATGGTAGAAGCTGCGGCTGCATGTG  2368
             ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  2325  TAGGGAAAAACTTCATCCCAGGAGAGATGTTCAGAATGGTAGAAGCTGCGGCTGCATGTG  2384

Query  2369  TCCGCCACTCAGCTGCAAAAAGACCAAAGATGAGCCAAGTGGTGAGAGCTTTGGACACAC  2428
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  2385  TCCGCCACTCAGCTGCAAAAAGACCAAAGATGAGTCAAGTGGTGAGAGCTTTGGACACAC  2444

Query  2429  TGGAAGAAGCAACGGACATAACCAACGGAATGAGACCAGGACAGAGCCAAGTGTTTGACT  2488
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2445  TTGAAGAAGCAACGGACATAACCAACGGAATGAGACCAGGACAGAGCCAAGTGTTTGACT  2504

Query  2489  CGAGACAACAATCTGCTCAGATAAGAATGTTTCAGAGAATGGCTTTTGGAAGTCAAGATT  2548
             ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct  2505  CGAGACAACAATCTGCTCAGATAAGGATGTTTCAAAGAATGGCTTTTGGGAGTCAAGATT  2564

Query  2549  ATAGTTCTGACTTCTTTGATCGCTCACAGTCACATAGTAGCTGGGGAAGTCGTGACCAGT  2608
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  2565  ATAGTTCTGACTTCTTTGATCGCTCACAGTCACATAGTAGCTGGGGCAGTCGTGACCAGT  2624

Query  2609  CCAGATTTGTACCTTAGTAGGTTTTATTGTTTTTGCTACTTTCTTCTTTCCCCTTAAACA  2668
             |||||||||||||||||||| ||||||||  |||||| |||||||||||||| |||||||
Sbjct  2625  CCAGATTTGTACCTTAGTAGTTTTTATTGCCTTTGCTTCTTTCTTCTTTCCCTTTAAACA  2684

Query  2669  TGTCTTCGATCTTGTATATTCTTTTGCATGATATAATGTATTTTTTAAAATATACATACA  2728
             |||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct  2685  TGTCCTCGATCTTGTATATTCTTTTGCATGATATAATGTATTTTTGAAA-TATACATACA  2743

Query  2729  TACACATAAATTTGATAAAATTTGGTAGTCTTTTGAAGAAAAAGAATTACAGATATATTT  2788
             |||||| |  |   | ||| ||||||||||||||||||||||||||| |||||| |||||
Sbjct  2744  TACACACA--T---A-AAA-TTTGGTAGTCTTTTGAAGAAAAAGAATAACAGATGTATTT  2796

Query  2789  G  2789
             |
Sbjct  2797  G  2797



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 138561096566


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5