BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494121 Length=2789 Score E Sequences producing significant alignments: (Bits) Value AT5G38560.1 | Symbols: | Protein kinase superfamily protein | ... 4205 0.0 > AT5G38560.1 | Symbols: | Protein kinase superfamily protein | chr5:15439249-15443164 FORWARD LENGTH=2798 Length=2798 Score = 4205 bits (2277), Expect = 0.0 Identities = 2649/2821 (94%), Gaps = 56/2821 (2%) Strand=Plus/Plus Query 1 aaaaagaaactcaagtcaatgaagaaaaagactaaaaaatggctatgataaag-aaa-CA 58 |||| |||||||||||||||||| |||||||| ||| ||| |||||||| ||| ||| | Sbjct 1 AAAACGAAACTCAAGTCAATGAATAAAAAGACGAAACAAT-GCTATGAT-AAGAAAAGAA 58 Query 59 ACAACACTCGaaaaaaaaGCTCTTCTTTTTCTTCCGCACATGTCTGACTCTCTCATAAGC 118 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 59 ACAACACTCG---AAAAAGTTCTTCTTTTTCTTCCGCACATGTCTGACTCTCTCATAAGC 115 Query 119 GTAAATCTCTCTGTCAAATATCTCTGACCAGAGAGACAGAGTTGCCTCCACGTTTGTCCA 178 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 116 GTAAATCGCTCTGTCAAATATCTCTGACCAGAGAGACAGAGTTGCCTCCACGTTTCTTCA 175 Query 179 GACAAGACTCACGCTCTTCCCTTTCACCACATTCCCTTCTTCCATTTCTCAATCTCACTT 238 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 176 GACAAGACTCACGCTCTTCCCTTTCACCACATTCCCTTC-TCCATTTCTCAATCTCACTT 234 Query 239 AAGCTTCTCGATTCTTCTTCCTCCAATTTCGAATCTTCCAAGTGAAAAAAGCTCCAAAGT 298 | |||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||| Sbjct 235 -ACCTTCTCGA---TTCTTGCTCCAATTTCGAATCTTCCGAGTGAAAAAAGCTTCAAAGT 290 Query 299 TTGGAACTTTCTACAGTTTCTTCATCTGGGCCTGCTCTGAATTTCGTTTGTAGCTTAATC 358 ||||||||||||| |||| || ||||||| ||||||||| |||||| ||||||| || Sbjct 291 TTGGAACTTTCTAGTGTTTATTAATCTGGGTCTGCTCTGAGTTTCGTGTGTAGCTGCATA 350 Query 359 TGAGCTTAAAGTTCGAGTTTTTACTTCTGGGTATTGAAATTCTAGGGCTAGTGATTGAAG 418 ||||||||||| |||||||||| | ||||||| ||| |||||||||||||||||||| || Sbjct 351 TGAGCTTAAAGCTCGAGTTTTTCCATCTGGGT-TTGGAATTCTAGGGCTAGTGATTGGAG 409 Query 419 ATTTTGGGAACTTAGGTTGA-TTTAGTAGGTTTGACTTCAGGTTGCGGAATTTAGGTTGA 477 |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 410 ATTTTGGGAATTTAGGTTGATTTTAGTAGGTTTGACTTCAGGTTGCGTAATTTAGGTTGA 469 Query 478 TTTTGATCTGATTTGTGGAATTAGGGTTTGTTTGTTCATAAAGCTTCAATTTTTGGCGTT 537 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 470 TTTTGATCCGATTTGTGGAATTAGGGTTTGTTTGTTCACAAAGCTTCAATTTTTGGAGTT 529 Query 538 TAAATGGATCGATAACGAAGGTGTTAGAAGAAAGTTTGTTGCTTTAGATTCGTATACGAT 597 |||||||||||||||||| |||||||||||||||||| ||||| |||||||||| |||| Sbjct 530 TAAATGGATCGATAACGACTGTGTTAGAAGAAAGTTTGCTGCTTCAGATTCGTATTCGAT 589 Query 598 AAAGAAATGAGTTTGGTTCCTCCTTTACCGATTTTATCGCCACCGTCGTCAAATTCTTCA 657 | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 590 ATAGAAATGAGTTTGGTTCCTCCTTTACCGATTTTATCACCACCGTCGTCAAATTCTTCA 649 Query 658 ACTACCGCACCTCCTCCGTTACCGTCTCAGCCCACCACTCCATCTGCTCCACCTCCGGTT 717 || || |||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 650 ACAACTGCACCTCCTCCGTTACAGACTCAGCCCACCACTCCATCTGCTCCACCTCCGGTT 709 Query 718 ACACCACCTCCTTCTCCGCCGCAATCTCCTCCGCCGGTTGTATCATCATcaccaccacca 777 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 710 ACACCACCTCCTTCTCCGCCGCAATCTCCGCCGCCGGTTGTATCATCAT---CACCACCA 766 Query 778 ccaccggttgtttcgtcacctccaccgtcttcttctccaccaccgtcaccTCCCGTCGTT 837 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 767 CCACCGGTTGTTTCGTCACCTCCACCGTCTTCTTCTCCACCACCGTCACCTCCTGTCATC 826 Query 838 ACTTCACCTCCTCCCACCGTTGCTTCTTCCCCTCCACCTCCTGTGGTGATTGCTTCTCCT 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 827 ACTTCACCTCCTCCCACCGTTGCTTCTTCCCCTCCACCTCCTGTGGTGATTGCTTCCCCT 886 Query 898 CCTCCCTCTACTCCGGCGACAACACCACCAGCTCCTCCGCAAACTGTCTCACCTCCACCA 957 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 887 CCTCCCTCAACTCCGGCGACAACACCACCAGCTCCTCCGCAAACTGTCTCACCTCCACCG 946 Query 958 CCTCCTGATGCTTCTCCCTCACCTCCTGCACCAACAACAACAAACCCTCCTCCTAAACCT 1017 ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 947 CCTCCTGATGCTTCTCCATCACCTCCCGCACCAACAACAACAAATCCTCCTCCTAAACCT 1006 Query 1018 TCTCCTT---CGCC----G--------------CCGGGAGAAACACCTTCACCGCCTAAA 1056 ||||||| |||| | ||||||||||||||||||||||||||| Sbjct 1007 TCTCCTTCACCGCCGGGAGAAACACCTTCACCACCGGGAGAAACACCTTCACCGCCTAAA 1066 Query 1057 CCTTct-c--c-a-t-caactccaacaacaaccacatctcctcctcctcctccagctatc 1110 |||||| | | | | |||||||||||||||||||||||||||||||||||||||||| | Sbjct 1067 CCTTCTCCGTCAACTCCAACTCCAACAACAACCACATCTCCTCCTCCTCCTCCAGCTACC 1126 Query 1111 tctgcttctcctccGTCTTCAAATCCAACTGATCCTTCTACTTTAGCTCCTCCTCCAACT 1170 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 1127 TCTGCTTCTCCTCCGTCTTCAAATCCTACTGATCCTTCTACGTTAGCTCCTCCTCCAACT 1186 Query 1171 CCATTACCTGTTCTTCCCAGAGAGAAACCAATTGCTAAACCAACTGGACCATCTTCAAAC 1230 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1187 CCATTACCTGTTGTTCCCAGAGAGAAACCAATTGCTAAACCAACTGGACCAGCTTCAAAC 1246 Query 1231 AATGGAAACAACACTATGCAGTCTGA-TTCATCAGGTAAGAGCGGAGTTGGTACTGGAGG 1289 ||||||||||||||| ||| |||| | |||| ||||||| |||| ||||||||||||||| Sbjct 1247 AATGGAAACAACACTTTGCCGTCT-AGTTCACCAGGTAAAAGCGAAGTTGGTACTGGAGG 1305 Query 1290 TATTGTAGCTATTGGAGCGATAGTCGGATTGGTTTTTCTTAGCCTTTTTGTGTTGGGTGT 1349 |||||||||||| |||| ||| || ||||||||||||||||||||||||||| ||||||| Sbjct 1306 TATTGTAGCTATCGGAGTGATTGTGGGATTGGTTTTTCTTAGCCTTTTTGTGATGGGTGT 1365 Query 1350 GTGGTTCACTCGGAAACGAAAGCGAAAGGACCCTGGAACCTTTGTTGGATACACTATGCC 1409 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1366 GTGGTTCACTCGGAAACGAAAGCGAAAGGACCCTGGAACCTTTGTTGGATACACAATGCC 1425 Query 1410 TCCTTCCGCTTATTCATCTCCTCAAGGCTCAGATGTAGTGCTCTTCAACTCGCATTCTTC 1469 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1426 TCCTTCCGCTTATTCATCTCCTCAAGGCTCAGATGTAGTGCTCTTCAACTCGCGTTCTTC 1485 Query 1470 AGCTCCTCCTAAGATGAGAAGCCATTCTGGTAGCGATTACATGTATGCGTCATCTGATTC 1529 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1486 AGCTCCTCCTAAAATGAGAAGCCATTCTGGTAGCGATTACATGTATGCGTCATCTGATTC 1545 Query 1530 AGGCATGGTTAGCAACCAAAGATCTTGGTTTTCATATGATGAATTATCTCAAGTTACAAG 1589 |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || Sbjct 1546 AGGCATGGTTAGCAACCAAAGATCATGGTTTTCATATGATGAGTTATCTCAAGTTACCAG 1605 Query 1590 TGGGTTCTCCGAGAAGAATCTTCTCGGTGAAGGAGGGTTTGGCTGTGTATACAAAGGCGT 1649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1606 TGGGTTCTCCGAGAAGAATCTTCTCGGTGAAGGAGGGTTTGGCTGTGTATACAAAGGCGT 1665 Query 1650 TCTTGCAGACGGAAGGGAAGTGGCAGTTAAACAGTTGAAGATTGGTGGAAGTCAAGGAGA 1709 |||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct 1666 TCTTTCTGACGGAAGGGAAGTGGCAGTTAAACAGTTAAAGATTGGTGGAAGCCAAGGGGA 1725 Query 1710 GAGAGAGTTCAAAGCAGAAGTTGAAATTATTTCTCGGGTTCATCACCGTCATTTGGTTAC 1769 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1726 GAGAGAGTTCAAAGCAGAAGTTGAAATCATTTCTCGGGTTCATCACCGCCATTTGGTTAC 1785 Query 1770 ATTAGTCGGTTATTGCATCTCGGAGCAACATAGGTTGCTTGTATATGATTATGTACCTAA 1829 | |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1786 ACTAGTTGGTTATTGCATCTCAGAGCAACATAGGTTGCTTGTATATGATTATGTACCTAA 1845 Query 1830 CAACACTCTCCATTATCATCTCCATGCTCCAGGAAGACCGGTTATGACTTGGGAAACTCG 1889 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1846 CAACACTCTCCATTATCATCTCCATGCTCCAGGAAGACCAGTTATGACTTGGGAAACTCG 1905 Query 1890 GGTAAGGGTCGCTGCTGGTGCAGCTCGTGGAATCGCCTACTTACATGAAGACTGTCATCC 1949 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1906 GGTAAGGGTCGCTGCTGGTGCAGCTCGTGGAATCGCCTACTTACATGAAGACTGTCATCC 1965 Query 1950 CCGCATTATTCACCGTGACATTAAATCATCCAACATACTT-TTAGATAACAGCTTTGAAG 2008 ||||||||||||||||||||| ||||| |||||||||||| || |||||||||||||||| Sbjct 1966 CCGCATTATTCACCGTGACATAAAATCTTCCAACATACTTCTT-GATAACAGCTTTGAAG 2024 Query 2009 CCTTGGTTGCAGATTTTGGGCTTGCGAAAATAGCACAAGAACTGGATTTAAACACACACG 2068 |||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||| Sbjct 2025 CCTTGGTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACACACG 2084 Query 2069 TCTCAACACGCGTAATGGGAACCTTTGGGTACATGGCTCCTGAATATGCAACAAGTGGAA 2128 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2085 TCTCAACGCGCGTAATGGGAACCTTTGGGTACATGGCTCCTGAATATGCAACAAGTGGAA 2144 Query 2129 AGCTGTCTGAAAAAGCGGATGTTTATTCGTATGGGGTAATACTGTTGGAGCTTATAACTG 2188 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2145 AGCTGTCTGAAAAAGCAGATGTTTATTCGTATGGGGTAATACTGTTGGAGCTTATAACTG 2204 Query 2189 GCCGCAAACCTGTAGATACGTCTCAACCACTTGGTGATGAGAGCCTTGTTGAATGGGCAA 2248 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2205 GCCGTAAACCCGTAGATACGTCTCAACCACTTGGTGATGAGAGCCTTGTTGAATGGGCAA 2264 Query 2249 GACCCTTGCTGAGTCAAGCAATCGAAAACGAAGAATTCGACGAGCTAGTAGATCCGAGGC 2308 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2265 GACCCTTGCTGGGTCAAGCAATCGAGAACGAAGAATTCGACGAGCTAGTAGATCCGAGGC 2324 Query 2309 TAGGGAACAACTTCATCCCGGGAGAGATGTTCAGAATGGTAGAAGCTGCGGCTGCATGTG 2368 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2325 TAGGGAAAAACTTCATCCCAGGAGAGATGTTCAGAATGGTAGAAGCTGCGGCTGCATGTG 2384 Query 2369 TCCGCCACTCAGCTGCAAAAAGACCAAAGATGAGCCAAGTGGTGAGAGCTTTGGACACAC 2428 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2385 TCCGCCACTCAGCTGCAAAAAGACCAAAGATGAGTCAAGTGGTGAGAGCTTTGGACACAC 2444 Query 2429 TGGAAGAAGCAACGGACATAACCAACGGAATGAGACCAGGACAGAGCCAAGTGTTTGACT 2488 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2445 TTGAAGAAGCAACGGACATAACCAACGGAATGAGACCAGGACAGAGCCAAGTGTTTGACT 2504 Query 2489 CGAGACAACAATCTGCTCAGATAAGAATGTTTCAGAGAATGGCTTTTGGAAGTCAAGATT 2548 ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| Sbjct 2505 CGAGACAACAATCTGCTCAGATAAGGATGTTTCAAAGAATGGCTTTTGGGAGTCAAGATT 2564 Query 2549 ATAGTTCTGACTTCTTTGATCGCTCACAGTCACATAGTAGCTGGGGAAGTCGTGACCAGT 2608 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2565 ATAGTTCTGACTTCTTTGATCGCTCACAGTCACATAGTAGCTGGGGCAGTCGTGACCAGT 2624 Query 2609 CCAGATTTGTACCTTAGTAGGTTTTATTGTTTTTGCTACTTTCTTCTTTCCCCTTAAACA 2668 |||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||| Sbjct 2625 CCAGATTTGTACCTTAGTAGTTTTTATTGCCTTTGCTTCTTTCTTCTTTCCCTTTAAACA 2684 Query 2669 TGTCTTCGATCTTGTATATTCTTTTGCATGATATAATGTATTTTTTAAAATATACATACA 2728 |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 2685 TGTCCTCGATCTTGTATATTCTTTTGCATGATATAATGTATTTTTGAAA-TATACATACA 2743 Query 2729 TACACATAAATTTGATAAAATTTGGTAGTCTTTTGAAGAAAAAGAATTACAGATATATTT 2788 |||||| | | | ||| ||||||||||||||||||||||||||| |||||| ||||| Sbjct 2744 TACACACA--T---A-AAA-TTTGGTAGTCTTTTGAAGAAAAAGAATAACAGATGTATTT 2796 Query 2789 G 2789 | Sbjct 2797 G 2797 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 138561096566 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5