BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494122 Length=1686 Score E Sequences producing significant alignments: (Bits) Value AT5G38530.1 | Symbols: TSBtype2 | tryptophan synthase beta type... 2610 0.0 > AT5G38530.1 | Symbols: TSBtype2 | tryptophan synthase beta type 2 | chr5:15424038-15426470 FORWARD LENGTH=1756 Length=1756 Score = 2610 bits (1413), Expect = 0.0 Identities = 1570/1646 (95%), Gaps = 9/1646 (1%) Strand=Plus/Plus Query 23 GATAACAAAGAAATGGCCTCTCAATTGCTTTTGCCTCCAAACCAATTCACCAAATCAGTC 82 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 48 GATAACAAAGAAATGGCCTCTCAATTGCTTTTACCTCCAAACCAATTCACTAAATCAGTC 107 Query 83 TCAGCTAAAGTTTTC-TTCACTGGTGATTATCAAGGATTTAGTGACTTAACCCTGAGAAG 141 ||| || |||||||| || |||||||||| ||||||||||||||||||||| |||| ||| Sbjct 108 TCACCTCAAGTTTTCATT-ACTGGTGATTGTCAAGGATTTAGTGACTTAACTCTGAAAAG 166 Query 142 AAAATCTAATCAAGC-ACAAAGGGTTTCAAATAATGGATTTAGCTTAAGAGCAAAAGCAG 200 |||||| || ||||| || ||| ||||| | ||||||| ||||||||||| |||||||| Sbjct 167 AAAATCAAACCAAGCTAC-AAGAGTTTC--A-AATGGATCTAGCTTAAGAGTAAAAGCAG 222 Query 201 ATTTGAGATCTACTAACAACAAATCATTGGTTGAAATTCCAAAACAATGGTACAATCTTG 260 ||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||| Sbjct 223 CTTTGAGATCTACTCACAACAAATCAGTGGTTGAGATTCCAAAACAATGGTATAATCTTG 282 Query 261 TTGCTGATCTTTCAGTCAAGCCTCCTCCACCGTTGCATCCAAAGACTTTCCAACCGATAA 320 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 283 TTGCTGATCTTTCAGTCAAGCCTCCTCCACCGTTGCATCCAAAGACTTTCGAACCGATAA 342 Query 321 AACCTGAAGATTTGTCTCATCTTTTCCCCAATGAGTTGATTAAACAAGAAGCAACACAAG 380 |||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 343 AACCCGAAGATTTGGCTCATCTTTTCCCCAATGAGTTGATTAAACAAGAAGCTACACAAG 402 Query 381 AGAGGTTTATTGATATCCCTGAGGAAGTTCTTGAAATCTATAAGCTTTGGCGTCCAACTC 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 403 AGAGGTTTATTGATATCCCTGAGGAAGTTCTTGAAATCTATAAGCTTTGGCGTCCAACTC 462 Query 441 CTCTAATCAGAGCAAAGAGATTAGAGAAGCTTCTTCAGACACCGGCAAGGATTTACTTCA 500 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 463 CTCTAATCAGAGCAAAGAGATTAGAGAAGCTTCTTCAAACACCGGCAAGGATTTACTTCA 522 Query 501 AGTATGAAGGTGGTAGCCCAGCTGGTTCACACAAACCCAACACAGCGGTTCCGCAAGCTT 560 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 523 AGTATGAAGGTGGTAGCCCAGCTGGTTCACACAAACCAAACACAGCGGTTCCACAAGCTT 582 Query 561 ATTACAATGCGAAAGAAGGCGTCAAGAACGTTGTGACGGAAACCGGTGCTGGCCAATGGG 620 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 583 ATTACAATGCGAAAGAAGGCGTCAAGAACGTTGTGACGGAAACCGGTGCTGGTCAATGGG 642 Query 621 GCAGTTCTTTAGCCTTTGCTTCTAGTCTATTTGGCCTTGACTGCGAAGTATGGCAAGTAG 680 | |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 643 GAAGTTCTTTAGCCTTTGCTTCTAGTCTATTTGGTCTCGACTGCGAAGTATGGCAAGTAG 702 Query 681 CCAACTCGTACCATACAAAGCCATATCGTCGGTTAATGATGCAAACTTGGGGTGCAAAGG 740 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 703 CCAACTCTTACCATACAAAGCCATATCGCCGGTTAATGATGCAAACTTGGGGTGCAAAGG 762 Query 741 TTCATCCATCGCCATCGGATCTCACTGAGGCAGGTAGAAGAATCCTCGAATCCGATCCAT 800 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 763 TTCATCCGTCGCCATCGGATCTCACTGAGGCGGGTAGAAGAATCCTCGAATCCGATCCAT 822 Query 801 CAAGTCCGGGAAGTTTAGGCATTGCGATTTCAGAAGCTGTTGAAGTTGCAGCGAGAAACG 860 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 823 CAAGTCCGGGAAGTTTAGGCATTGCGATATCAGAAGCGGTTGAAGTTGCAGCGAGAAACG 882 Query 861 AGGATACAAAATACTGCCTAGGGAGTGTATTGAACCATGTGTTGTTACACCAGACAATTA 920 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 883 AGGATACAAAATACTGCCTAGGGAGTGTATTGAACCATGTGTTGTTACACCAAACAATTA 942 Query 921 TTGGAGAAGAATGCATTCAACAAATGGAGAATTTTGGTGAAACACCTGATTTGATCATAG 980 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 943 TTGGAGAAGAATGCATTCAACAAATGGAGAATTTTGGTGAAACACCTGACCTGATCATAG 1002 Query 981 GGTGTACTGGTGGAGGATCAAATTTTGCTGGTTTGAGTTTTCCTTTTATTCGAGAGAAAC 1040 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1003 GGTGTACTGGTGGAGGATCAAATTTTGCTGGTTTGAGTTTTCCTTTTATCCGGGAGAAAC 1062 Query 1041 TCAAAGG-AAATATAAACCCTGTTATAAGAGCGGTTGAGCCCTCGGCTTGTCCTTCCTTG 1099 ||||||| ||| || |||||||||||||||||||||||||| || ||||||||||||||| Sbjct 1063 TCAAAGGCAAA-ATCAACCCTGTTATAAGAGCGGTTGAGCCATCTGCTTGTCCTTCCTTG 1121 Query 1100 ACCAAAGGGGTTTACGCGTATGATTTTGGCGATACAGCTGGATTGACTCCTTTGATGAAG 1159 |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1122 ACCAAAGGGGTTTATGCTTATGATTTTGGCGATACGGCTGGATTGACTCCTTTGATGAAG 1181 Query 1160 ATGCATACTTTAGGACATGACTTCATTCCTGATCCTATCCATGCCGGTGGATTACGGTAC 1219 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1182 ATGCATACTTTGGGACATGACTTCATTCCTGATCCTATCCATGCCGGTGGATTAAGGTAC 1241 Query 1220 CATGGGATGGCACCCTTGATCTCACATGTTTATGAACAAGGATTCATGGAAGCAATTTCA 1279 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1242 CATGGGATGGCACCATTGATCTCACATGTTTATGAACAAGGATTCATGGAAGCAATTTCA 1301 Query 1280 ATTCCTCAAATCGAGTGTTTCCAAGGTGCTATTCAGTTTGCAAGAACAGAAGGGATAATA 1339 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1302 ATTCCTCAAATTGAGTGTTTCCAAGGTGCTATTCAGTTTGCAAGAACAGAAGGGATCATA 1361 Query 1340 CCCGCACCAGAACCGACTCACGCCATTGCTGCAACCATAAGAGAAGCTCTCCGATGCAAA 1399 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1362 CCCGCACCAGAACCGACCCACGCCATTGCTGCAACCATAAGAGAGGCTCTCCGATGTAAA 1421 Query 1400 GAGACAGGAGAAGCAAAAGTGATACTAATGGCTATGTGTGGACATGGCCACTTCGACCTT 1459 ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1422 GAGACGGGAGAAGCAAAAGTGATACTAATGGCGATGTGTGGACATGGCCATTTCGACCTT 1481 Query 1460 GCCTCTTACGACAAGTATTTAAAAGGCGAGTTGATAGATTTATCATTCAGCGAAGAGAAG 1519 | |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 1482 ACTTCTTACGACAAGTATTTAAAAGGCGAGTTGGTGGATTTATCATTCAGCGAAGAGAAG 1541 Query 1520 ATACGAGAGTCTTTGTCCAAGGTTCCTCATGTTGTTTAAGCTCGAGTGGCTCCATAACCA 1579 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 1542 ATACGAGAGTCTTTGTCCAAGGTTCCTCATGTTGTTTAAGCTCGAATGGCCCCATAACCA 1601 Query 1580 CGGGAAACCAATGTCCCATGTTCCAAACTAGACGTGTGACAGAAGTTAGGTTTATTCTTG 1639 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 1602 CGGGAAACCAATGTCCCATGTTCCAAACTAGACGTGAGACAGAAGTTAGGTTTAATCTTG 1661 Query 1640 GCTTTTGAAATAAAGAGAGAGGGAGA 1665 ||||||||||| ||||| ||| |||| Sbjct 1662 GCTTTTGAAATGAAGAGTGAGAGAGA 1687 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83332904700 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5