BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494125 Length=1435 Score E Sequences producing significant alignments: (Bits) Value AT5G38510.1 | Symbols: | Rhomboid-related intramembrane serine... 2237 0.0 > AT5G38510.1 | Symbols: | Rhomboid-related intramembrane serine protease family protein | chr5:15417733-15420606 REVERSE LENGTH=1576 Length=1576 Score = 2237 bits (1211), Expect = 0.0 Identities = 1367/1442 (95%), Gaps = 12/1442 (1%) Strand=Plus/Plus Query 1 TAAACGTAATTTTCACAAGACACTGCTTCGTTTATTCGAACTCGCAATTCTTCCTAATCC 60 ||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||| Sbjct 44 TAAACGTAATTTTCACAAGTCACTGCTTCG-TTATTCGAACTC-CAATTTTTCCTAATCC 101 Query 61 TCGCAACCACAAATCTTCAATCTTTAAGATTAGGATCAGG-TTCTTCGTTCAAAGGACCT 119 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 102 TCGCAACCACAAATCTTCAATCTTCAAGATTAGGATCAGGTTTCTTCGTTCAAAGGACCT 161 Query 120 GAAGATGGCACTGTTTCCTCTTCACCATGAAGTCCCTTGTAAAGGAGGAGTATTGTTTGA 179 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 162 GAAGATGGCACTGTTTCCTCTTCACCATGAAGTCCCTTGTAAAGGAGAAGTATTGTTTGA 221 Query 180 TTCAAATGGTTTAAGACGTTTTTCGTCTGGTCTGAAACATAGAACAATGGCTGAAGCAAC 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 222 TTCAAATGGTTTAAGACGTTTTTCGTCTGGTCTGAAACATAGAACAATGGCTGAAGCAAC 281 Query 240 CACGCTAGGCAGGGATTGTAGGATGAAGGA-TCGTCT-AAATTCAATACCGTTTTGTCAT 297 |||||| |||||||||||||||||||| || | | | ||| ||||| |||| ||||| | Sbjct 282 CACGCTTGGCAGGGATTGTAGGATGAA-GAGTTATATGAAA-TCAATCCCGTATTGTCGT 339 Query 298 TCACCGAGAGGAAGGTTATGCTTGGTTAGGGCGTCATCAGAGAACAAGATTACCAAAAAG 357 ||||| ||| |||||||||| || ||||| ||||||||||||||||||||||||||| || Sbjct 340 TCACCAAGAAGAAGGTTATGTTTAGTTAGAGCGTCATCAGAGAACAAGATTACCAAACAG 399 Query 358 AGACTTAAGCTGTTGGATTCTTACTTTGGGAAACTTCAAAATGACGATGAGAAGCCTTCT 417 |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 400 AGACTTAAACTGTTGGATTCTTACTTTGGGAAACTTCAAAACGATGATGAGAAGCCTTCT 459 Query 418 ATCTCAACGGGAGATGATATTGATCGGAAAGCTGAACTCAATGCGGATAAAGAGTTGGAT 477 |||||||| ||||||||||||||||| |||||||||||||||| | || ||||||||||| Sbjct 460 ATCTCAACAGGAGATGATATTGATCGCAAAGCTGAACTCAATGTGAATGAAGAGTTGGAT 519 Query 478 TCTTTGAGTGTTTATCTTGACAAACTCCAAAAAGATGCAAAATCTAAAGGTTTAGTCTCG 537 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 520 TCTTTGAGTGCTTATCTTGACAAACTCCAAAAAGATGCAAAATCTAAAGGTTTAGTCTCG 579 Query 538 TCCACCTTGGACGTGGTAAAATCAGAAGGCGGTTCAGTAGCAAGCAAATTGAGAAAGACT 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 580 TCCACCTTGGACGTGGTAAAATCAGAAGGCGGTTCAGTAGCAAGCAAATTGAGAAAGACT 639 Query 598 GGTATTGAAAGCAATAATAGTCCTTTCCAGCAGCTTGATGATGATGATCAATCAGAAGAT 657 |||||||||| |||||||||||||||||||||| |||||||||| |||||| |||||||| Sbjct 640 GGTATTGAAAACAATAATAGTCCTTTCCAGCAGTTTGATGATGAAGATCAAGCAGAAGAT 699 Query 658 ACATTGAACTTCTATGCTGTGAGCATATTAGCATCCATAAATGTCGGTGTGTGCTTGTTT 717 |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 700 ACATTGAACTTCTATGCTGTGAGCATATTAGCATCCATCAATGTTGGTGTCTGCTTGTTT 759 Query 718 GAAGCGGCAGCGCCAGTTAGGAATAACGATATGGGACTGCT-ATCACTCCCGTTGTTATA 776 || |||||||||||||||||||| ||| |||||||||| || ||||||||| |||||||| Sbjct 760 GAGGCGGCAGCGCCAGTTAGGAACAACAATATGGGACT-CTTATCACTCCCTTTGTTATA 818 Query 777 TGGAGCCAAGATAAATGATCTAATCCTGGCTGGAGAATGGTGGAGGCTGGTCACACCCAT 836 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 819 TGGAGCAAAGATAAATGATCTAATCCTTGCTGGAGAATGGTGGAGGCTGGTCACACCCAT 878 Query 837 GTTTCTGCACTCTGGAGTTCCTCATGTAGCCCTTAGCTCCTGGGCTCTGCTTACTTTTGG 896 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 879 GTTTCTGCACTCTGGAATTCCTCATGTAGCCCTTAGCTCCTGGGCTCTGCTTACTTTTGG 938 Query 897 ACCAAAAGTCTGCCGTGACTATGGACTATTCACGTTTTGTCTCATTTACATTCTCGGAGG 956 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 939 ACCAAAAGTCTGCCGTGACTATGGATTATTCACGTTTTGTCTCATTTACATTCTCGGAGG 998 Query 957 AGTCTCTGGTAATTTCATGAGCTTTCTTCATACACCAGATCCTACAGTTGGAGGAACTGG 1016 ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 999 AGTCTCTGGAAATTTCATGAGCTTTCTGCATACAGCAGATCCTACAGTTGGAGGAACTGG 1058 Query 1017 ACCAGCATTTGCATTAATAGGAGCTTGGCTCGTCGACCAAAATCAGAACAAGGAGATGAT 1076 |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1059 ACCAGCATTTGCGTTAATAGGAGCTTGGCTCGTTGACCAAAATCAGAACAAAGAGATGAT 1118 Query 1077 CAAAAGCAACGAATATGAGGACTTGTTTCAGAAGGCCATTATAATGACAGGATTTGGTCT 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1119 CAAAAGCAACGAATATGAGGACTTGTTTCAGAAGGCCATTATAATGACAGGATTTGGTCT 1178 Query 1137 CATATTAAGCCATTTCGGCCCAATTGATGACTGGACAAATCTGGGAGCACTTATAGCCGG 1196 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1179 CATATTAAGCCATTTCGGTCCAATTGATGACTGGACAAATCTGGGAGCACTTATAGCAGG 1238 Query 1197 GATTGTATACGGATTCTTCACTTGTCCAGTGCTCCAACTTGGAAGAGA---AAGTGAAAG 1253 |||||||||||| || ||||||||||| ||||| |||||||| || | ||||||||| Sbjct 1239 GATTGTATACGGGTTTTTCACTTGTCCGGTGCTACAACTTGGTAGCGGCGGAAGTGAAAG 1298 Query 1254 ACAAGAAGGGATTGTAACGGTAGGACCAGAGAAACAAAACAGCGCTGACCCGTGTAAATC 1313 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1299 GCAAGAAGGGATTGTGACGGTTGGACCAGAGAAACAAAACAGCGCTGACCCGTGTAAATC 1358 Query 1314 GTTTCTGCTTTTCACAATCTTTGTCGCGGTTATTGTGACTTCTCTGCTACTTATTGGGGA 1373 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1359 GTTTCTGCTTTTCACAATCTTCGTCGCGGTTATTGTGACTTCTCTGCTACTGATTGGGGA 1418 Query 1374 CGGACCATTGGACTTCCCAACGTACGATGATGTTGTGTATTCTCTCATCTAGTGTATCAT 1433 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1419 CGGTCCATTGGACTTCCCAACGTACGATGATGTTGTGTATTCTCTCATTTAGTGTATCAT 1478 Query 1434 CA 1435 || Sbjct 1479 CA 1480 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70732567905 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5