BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494127 Length=1063 Score E Sequences producing significant alignments: (Bits) Value AT5G38480.1 | Symbols: GRF3, RCI1 | general regulatory factor 3... 1559 0.0 AT5G16050.1 | Symbols: GRF5, GF14 UPSILON | general regulatory ... 669 0.0 AT4G09000.2 | Symbols: GRF1, GF14 CHI | general regulatory fact... 399 2e-110 AT2G10450.1 | Symbols: | 14-3-3 family protein | chr2:4020305-... 191 1e-47 > AT5G38480.1 | Symbols: GRF3, RCI1 | general regulatory factor 3 | chr5:15409697-15411516 FORWARD LENGTH=1141 Length=1141 Score = 1559 bits (844), Expect = 0.0 Identities = 972/1030 (94%), Gaps = 23/1030 (2%) Strand=Plus/Plus Query 1 TCTCTTCTTATTCCATTTTTTCAAACCACTTGC-AAATTCGAATCAGATCTTCAAAC-Ga 58 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 40 TCTCTTCTTATTCCATTTTTTCAAACCACTTGCAAAATTCGAATCAGATCTTC--TCTTC 97 Query 59 aaaagaaaaaaga-aaaGGATTTGCTCTAGATTGTTAAAATCGAAGATGTCGACTGAAGC 117 || ||||||| | |||||||||||||||||||||| |||||||||||| | | Sbjct 98 AATCGAAAAAAAAGAAAGGATTTGCTCTAGATTGTT-GAATCGAAGATGT---C----G- 148 Query 118 ATCAAGGGAAGAGAATGTTTACATGGCGAAATTAGCCGAACAAGCTGAACGTTATGAAGA 177 | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 149 A-CAAGGGAAGAGAATGTTTACATGGCGAAATTAGCCGAACAAGCTGAACGTTACGAAGA 207 Query 178 AATGGTTGAATTCATGGAGAAAGTTGCGAAAACTGTTGATGTTGAAGAACTCTCTGTTGA 237 ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 208 AATGGTTGAATTCATGGAGAAAGTTGCGAAAACTGTTGATGTTGAGGAACTTTCAGTTGA 267 Query 238 AGAGAGGAACCTTCTCTCTGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTG 297 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 268 AGAGAGGAATCTTCTCTCTGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTG 327 Query 298 GAGAATCATTTCTTCGATTGAGCAGAAAGAAGAGAGCAAAGGGAACGAGGATCATGTTGC 357 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 328 GAGAATCATTTCTTCGATTGAGCAGAAAGAAGAGAGCAAAGGGAACGAAGATCATGTTGC 387 Query 358 TATTATCAAGGATTACAGGGGAAAGATCGAAACCGAGCTTAGCAAAATCTGTGATGGGAT 417 |||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct 388 TATTATCAAGGATTACAGAGGAAAGATTGAATCCGAGCTTAGCAAAATCTGTGATGGGAT 447 Query 418 TTTGAATGTTCTTGAAGCTCATCTTATTCCATCTGCTTCACCTGCTGAATCTAAAGTGTT 477 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 448 TTTGAATGTTCTTGAAGCTCATCTTATTCCTTCTGCTTCACCAGCTGAATCTAAAGTGTT 507 Query 478 TTACCTAAAAATGAAGGGAGATTATCATAGGTATCTTGCCGAGTTTAAGGCTGGTGCTGA 537 ||| || || |||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 508 TTATCTTAAGATGAAGGGTGATTATCATAGGTATCTTGCTGAGTTTAAGGCTGGTGCTGA 567 Query 538 GAGGAAAGAAGCTGCTGAAAGCACTTTGGTTGCTTACAAGTCTGCTTCCGACATTGCCAC 597 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 568 AAGGAAAGAAGCTGCTGAAAGCACTTTGGTTGCTTACAAGTCTGCTTCCGACATTGCCAC 627 Query 598 TGCTGAGTTAGCTCCCACTCACCCGATAAGGCTTGGTCTTGCCCTCAACTTCTCTGTGTT 657 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 628 TGCTGAGTTAGCTCCTACTCACCCGATAAGGCTTGGTCTTGCACTCAACTTCTCTGTGTT 687 Query 658 TTACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCGCAAAGCAGGCATTTGA 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 688 TTACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCGCAAAGCAGGCGTTTGA 747 Query 718 TGATGCTATCGCTGAGTTGGATACATTGGGTGAGGAATCATACAAGGACAGTACACTGAT 777 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 748 TGATGCAATCGCTGAGTTAGATACATTGGGTGAGGAATCATACAAGGACAGTACACTGAT 807 Query 778 TATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGATATGACTGACGAAGCAGG 837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 808 TATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGATATGACTGACGAAGCAGG 867 Query 838 AGATGAGATCAAGGAGGCATCGAAGCCCGAAGGTGCCGAGTGAACCTGAAGAAGAGGAA- 896 ||||||||| ||||||||||| |||||||| |||||||||| |||| |||||||||||| Sbjct 868 AGATGAGATTAAGGAGGCATCAAAGCCCGATGGTGCCGAGTAAACCCGAAGAAGAGGAAG 927 Query 897 A-TCATTTTATAATGGTAGAAA-CTTTCATGTGATAATCTGAGTGAGGGATAGCTCAGGA 954 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 928 AGTCATTTTATAATGGTAGAAAACTTTCATGTGATAATCTGAGTGAGGGATAGCTCAGGA 987 Query 955 TTCTTATAAG-GACACAGTTTTATTGTTGTTTGTTTGTTTGGAAAAACTACTTGCGATTT 1013 |||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 988 TTCTTATAAGAGACACAGTTTTATTGTTGTTTGTTTGTTTTGAAA--CTACTTGCGATTT 1045 Query 1014 AT-ATTTCCT 1022 || ||| ||| Sbjct 1046 ATCATT-CCT 1054 > AT5G16050.1 | Symbols: GRF5, GF14 UPSILON | general regulatory factor 5 | chr5:5243745-5245820 REVERSE LENGTH=1162 Length=1162 Score = 669 bits (362), Expect = 0.0 Identities = 635/765 (83%), Gaps = 26/765 (3%) Strand=Plus/Plus Query 101 AAGATGTCGACTGAAGCATCAAGGGAAGAGAATGTTTACATGGCGAAATTAGCCGAACAA 160 |||||||| |||| | || ||||||||||||| ||| |||| || |||||||| ||| Sbjct 90 AAGATGTCTTCTGATTCGTCCCGGGAAGAGAATGTGTACTTGGCCAAGTTAGCCGAGCAA 149 Query 161 GCTGAACGTTATGAAGAAATGGTTGAATTCATGGAGAAAGTTGCGAAA-ACTGTTGATG- 218 ||||| ||||| || ||||||||||| ||||||||||||||||| ||| || || || | Sbjct 150 GCTGAGCGTTACGAGGAAATGGTTGAGTTCATGGAGAAAGTTGC-AAAGACCGTGGA-GA 207 Query 219 TTGAAGAACTCT-CTGTTGAAGAGAGGAACCTTC-TCTCTGTTGCTTACAAGAACGTGAT 276 || ||||| | |||||||||||||||| | || | ||||||||||||||||||||||| Sbjct 208 CCGAGGAACT-TACTGTTGAAGAGAGGAATC-TCTTGTCTGTTGCTTACAAGAACGTGAT 265 Query 277 TGGAGCGAGAAGAGCTTCGTGGAGAATCATTTCTTCGATTGAGCAGAAAGAAGAGAGCAA 336 ||| || || |||||||| ||||| || || ||||| ||||||||||| ||||| ||| | Sbjct 266 TGGTGCTAGGAGAGCTTCTTGGAGGATTATCTCTTCCATTGAGCAGAAGGAAGATAGC-A 324 Query 337 AGGG-AACGAG-GATCATGTTGCTATTATCAAGGATTACAGGGGAAAGATCGAAACCGAG 394 ||| ||| || ||||||||| | ||||||||||||||||| || ||||| ||||| ||| Sbjct 325 GGGGCAAC-AGTGATCATGTTTCGATTATCAAGGATTACAGAGGCAAGATTGAAACTGAG 383 Query 395 CTTAGCAAAATCTGTGATGGGATTTTGAATGTTCTTGAAGCTCATCTTATTCCAT-CTGC 453 || ||||| || |||||||| |||||||| ||||||| |||||||| ||||| | |||| Sbjct 384 CTCAGCAAGATTTGTGATGGCATTTTGAACCTTCTTGAGGCTCATCTCATTCC-TGCTGC 442 Query 454 TTCACCT-GCTGAATCTAAAGTGTTTTACCTAAAAATGAAGGGAGATTATCATAGGTATC 512 ||| | ||||| || ||||| |||||||| || |||||||||||||||||| |||| | Sbjct 443 TTC-TTTGGCTGAGTCCAAAGTTTTTTACCTGAAGATGAAGGGAGATTATCATCGGTACC 501 Query 513 TTGCCGAGTTTAAGGCTGGTGCTGAGAGGAAAGAAGCTGCTGAAAGCACT-TTGGTTGCT 571 |||| || || ||| |||||||||||||||||||||||||||| |||||| ||| |||| Sbjct 502 TTGCTGAATTCAAGACTGGTGCTGAGAGGAAAGAAGCTGCTGAGAGCACTCTTG-TTGCC 560 Query 572 TACAAGTCTGCTTCCG-ACATTGCCACT-GCTGAGT-TAGCTCCCACTCACCCGATAAGG 628 |||||||||||| | | | ||||| || ||||| | | |||||||||||||| || || Sbjct 561 TACAAGTCTGCT-CAGGATATTGCT-CTTGCTGA-TCTGGCTCCCACTCACCCAATCAGA 617 Query 629 CTTGGTCTTGCCCTCAACTTCTCTGTGTTT-TACTATGAAATCCTCAACTCGCCTGATCG 687 || || ||||| || ||||||||||| ||| |||||||| || |||||||| ||||||| Sbjct 618 CTGGGGCTTGCTCTTAACTTCTCTGT-TTTCTACTATGAGATTCTCAACTCATCTGATCG 676 Query 688 TGCTTGCAGCCTCGCAAAGCAGGCATTTGATGATGCTATCGCTGAGTTGGATACATTGGG 747 ||| || || |||||||||||||| |||||||| || ||| | ||| | || |||||||| Sbjct 677 TGCGTGTAGTCTCGCAAAGCAGGCTTTTGATGAGGCAATCTCGGAGCTAGACACATTGGG 736 Query 748 TGAGGAATCATACAAGGACAGTACACTGATTATGCAGCTTCTTAGAGACAATCTCACTCT 807 |||||||||||||||||||||||| |||| ||||||||||| | ||||||||||| || Sbjct 737 AGAGGAATCATACAAGGACAGTACATTGATCATGCAGCTTCTCCGTGACAATCTCACCCT 796 Query 808 CTGGACTTCAGATATGACTGACGAAGCAGGAGATGAGATCAAGGA 852 ||||||||| || | | ||||||||| || ||||| |||||||| Sbjct 797 CTGGACTTCTGACCTCAATGACGAAGCTGGTGATGATATCAAGGA 841 > AT4G09000.2 | Symbols: GRF1, GF14 CHI | general regulatory factor 1 | chr4:5775210-5777481 FORWARD LENGTH=1458 Length=1458 Score = 399 bits (216), Expect = 2e-110 Identities = 549/706 (78%), Gaps = 38/706 (5%) Strand=Plus/Plus Query 137 TACATGGCGAAATTAGCCGAACAAGCTGAACGTTATGAAGAAATGGTTGAATTCATGGAG 196 |||||||||||| | ||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 220 TACATGGCGAAACTCGCCGAACAAGCAGAGCGTTACGAAGAAATGGTTGAATTCATGGAG 279 Query 197 AAAGTTGCGAAAACTGTTGATGTTGAAGAACTCTCTGTTGAAGAGAGG-AACCTTCTCTC 255 ||||| |||||| ||||||| || |||||| | || ||||| | | || || ||||| Sbjct 280 AAAGTCGCGAAAGCTGTTGACAAAGACGAACTCACCGTCGAAGA-ACGTAATCTCCTCTC 338 Query 256 TGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTGGAGAATCATTTCTTCGAT 315 || |||||||| ||||| || ||||| | | |||||||||||||||||||| ||||| Sbjct 339 CGTCGCTTACAAAAACGTCATCGGAGCTCGTCGTGCTTCGTGGAGAATCATTTCATCGAT 398 Query 316 TGAGCAGAAAGAAGAGAG-CAAAG-GG-AACGAGGATCATGTTGCTATT-ATCAAG-GAT 370 || || |||| || ||| | | || ||||| || || ||| | || ||| | || Sbjct 399 CGAACA-AAAGGAG-GAGTCTC-GCGGTAACGATGACCACGTTTCG-TTGATCC-GTGAC 453 Query 371 TACAGGGG-AAAGATCGAAACCGAGCTTAGCAAA-ATCTGTGATGGGATT-TTGAATG-T 426 ||||| | ||| |||||||| || ||| | | |||||||| || || || || | | Sbjct 454 TACAGAAGCAAA-ATCGAAACGGAACTTT-CTGATATCTGTGACGGAATCCTT-AA-GCT 509 Query 427 TCTTGA-AGCTCAT-CTTATTCCATCTGCTTCACCTGCTGAATCTAAAGTGTTTTACCTA 484 ||| || | | || || |||| ||||| | ||| || || || |||||||| || Sbjct 510 TCTCGATA-CG-ATTCTCGTTCCCGCTGCTGCTTCTGGAGATTCGAAGGTGTTTTATCTG 567 Query 485 AAAATGAAGGGAGATTATCATAGGTATCTTGCC-GAGTTTAAGGCTGGTGCT-GAGAGGA 542 || ||||| || |||||||||||||| |||| | ||||| || ||||| | ||||||| Sbjct 568 AAGATGAAAGGTGATTATCATAGGTA-CTTGGCTGAGTTCAAATCTGGT-CAAGAGAGGA 625 Query 543 AAGAAGCTGCTGAA-AGCACT-TTGGTTGCTTACAA-GTCTGCTTCCG-ACATTGCCACT 598 |||| ||||||||| | ||| || | |||||||| | ||||| | | | ||||| | | Sbjct 626 AAGATGCTGCTGAACAT-ACTCTTACT-GCTTACAAAG-CTGCT-CAGGATATTGCTAAT 681 Query 599 GCTGAGTTAGCTCCCACTCACCCGATAAGGCTTGGTCTTGCCCTCAACTTCTCTGTGTTT 658 |||| || ||||| || || ||||| | ||||||||||| | ||||||||||||||| Sbjct 682 TCTGAATTGGCTCCAACGCATCCGATTCGTCTTGGTCTTGCGTTGAACTTCTCTGTGTTT 741 Query 659 TACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCGCAAAGCAGGCATTTGAT 718 |||||||| || ||||| || || ||||||||||| | ||||| |||||||| |||||| Sbjct 742 TACTATGAGATTCTCAATTCTCCAGATCGTGCTTGTAATCTCGCTAAGCAGGCGTTTGAT 801 Query 719 GATGCTATCGCTGAGTTGGATACA-TTGGGTGAGGAATCATACAAGGACAGTACACTGAT 777 || || || ||||| |||||||| |||| ||| || ||||||||||||||||| |||| Sbjct 802 GAAGCAATTGCTGAATTGGATACTCTTGG-TGAAGAGTCATACAAGGACAGTACTTTGAT 860 Query 778 TATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGATATG 823 ||||||||||||| | || || ||||||||||||||||| |||||| Sbjct 861 TATGCAGCTTCTTCGTGATAACCTCACTCTCTGGACTTCTGATATG 906 > AT2G10450.1 | Symbols: | 14-3-3 family protein | chr2:4020305-4020773 FORWARD LENGTH=249 Length=249 Score = 191 bits (103), Expect = 1e-47 Identities = 120/128 (94%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 730 TGA-GTTGGATACATTGGGTGAGGAATCATACAAGGACAGTACACTGATTATGCAGCTTC 788 ||| ||||||| |||||||||| |||| ||||||||||||||| ||||||||| || ||| Sbjct 56 TGATGTTGGATGCATTGGGTGATGAATTATACAAGGACAGTACCCTGATTATGAAGATTC 115 Query 789 TTAGAGACAATCTCACTCTCTGGACTTCAGATATGACTGACGAAGCAGGAGATGAGATCA 848 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 116 TTAGAGACAATCTCACTTTCTGGACTTCAGATATGACTGACGAAGCAGGAGATGAGATCA 175 Query 849 AGGAGGCA 856 |||||||| Sbjct 176 AGGAGGCA 183 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52057965165 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5