BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494136 Length=596 Score E Sequences producing significant alignments: (Bits) Value AT5G38430.1 | Symbols: | Ribulose bisphosphate carboxylase (sm... 913 0.0 AT5G38420.1 | Symbols: | Ribulose bisphosphate carboxylase (sm... 902 0.0 AT5G38410.3 | Symbols: | Ribulose bisphosphate carboxylase (sm... 817 0.0 AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxyla... 734 0.0 > AT5G38430.1 | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15384117-15385247 REVERSE LENGTH=808 Length=808 Score = 913 bits (494), Expect = 0.0 Identities = 561/594 (94%), Gaps = 2/594 (0%) Strand=Plus/Plus Query 1 AAGAACAAGACGTAGTGATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCC 60 ||||| |||| | ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 13 AAGAAGAAGAAGAAGTAATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCC 72 Query 61 CAGCTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCCG 120 | ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| | Sbjct 73 CGGCTCAAGCCACCATGGTCGCTCCATTCACTGGTTTGAAGTCATCCGCTTCTTTCCCGG 132 Query 121 TCACCCGCAAGGCTAACAACGACATTACTTCTATCTCAAGCAATGGCGGAAGAGTTAGCT 180 ||||||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||| Sbjct 133 TCACCCGCAAGGCCAACAACGACATTACTTCCATCACAAGCAATGGGGGAAGAGTTAGCT 192 Query 181 GCATGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTG 240 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 193 GCATGAAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTG 252 Query 241 ACCTTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 253 ACCTTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAATGGATTC 312 Query 301 CTTGTGTTGAATTCGAGTTAGAGCATGGATTTGTGTACCGTGAGCACGGAAACACTCCCG 360 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 313 CTTGTGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCG 372 Query 361 GATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGATT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 373 GATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACT 432 Query 421 CTGCTCAAGTGTTGAAGGAAGT-GCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATT 479 | |||||||||||||||||||| | |||||||||||||||||||||| ||||||||| Sbjct 433 CCGCTCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCGGGCGCCTTCATT 491 Query 480 AGGATCATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAG 539 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 492 AGGATCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAG 551 Query 540 CCCCCAAGCTTCACCGATGCTTAATTCCCTTTCTTGAATGTTCAGCGTTGACTA 593 |||||||||||||| ||||||||| ||| ||||| |||| |||| |||||||| Sbjct 552 CCCCCAAGCTTCACTGATGCTTAAATCCTTTTCTGGAATATTCAATGTTGACTA 605 > AT5G38420.1 | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15380945-15382035 REVERSE LENGTH=861 Length=861 Score = 902 bits (488), Expect = 0.0 Identities = 555/588 (94%), Gaps = 2/588 (0%) Strand=Plus/Plus Query 4 AACAAGACGTAGTGATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCAG 63 ||||||| | ||| ||||||||||||||| ||||||| ||||||||||||||||||| | Sbjct 44 AACAAGAAGAAGTAATGGCTTCCTCTATGTTCTCCTCCACCGCTGTGGTTACCTCCCCGG 103 Query 64 CTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCCGTCA 123 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 104 CTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTTCTTTCCCGGTCA 163 Query 124 CCCGCAAGGCTAACAACGACATTACTTCTATCTCAAGCAATGGCGGAAGAGTTAGCTGCA 183 |||||||||| ||||||||||||||||| ||| ||||||| || |||||||||||||||| Sbjct 164 CCCGCAAGGCCAACAACGACATTACTTCCATCACAAGCAACGGAGGAAGAGTTAGCTGCA 223 Query 184 TGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACC 243 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 224 TGAAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACC 283 Query 244 TTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTT 303 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 284 TTAGTGACGTTGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTT 343 Query 304 GTGTTGAATTCGAGTTAGAGCATGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGAT 363 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 344 GTGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGAT 403 Query 364 ACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGATTCTG 423 |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct 404 ACTATGATGGACGATACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCG 463 Query 424 CTCAAGTGTTGAAGGAAG-TGCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATTAGG 482 |||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| Sbjct 464 CTCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCTGGCGCCTTCATTAGG 522 Query 483 ATCATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCC 542 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 523 ATCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCC 582 Query 543 CCAAGCTTCACCGATGCTTAATTCCCTTTCTTGAATGTTCAGCGTTGA 590 |||||||||||||| ||||||| |||||||| |||| ||||||||||| Sbjct 583 CCAAGCTTCACCGAAGCTTAATCCCCTTTCTGGAATATTCAGCGTTGA 630 > AT5G38410.3 | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15377173-15378416 REVERSE LENGTH=999 Length=999 Score = 817 bits (442), Expect = 0.0 Identities = 541/586 (92%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 4 AACAAGACGTAGTGATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCAG 63 ||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| | Sbjct 97 AACAAGAAGTAGTAATGGCTTCCTCTATGCTCTCCTCCGCCGCTGTGGTTACATCCCCGG 156 Query 64 CTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCCGTCA 123 |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 157 CTCAGGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCATTCCCGGTCA 216 Query 124 CCCGCAAGGCTAACAACGACATTACTTCTATCTCAAGCAATGGCGGAAGAGTTAGCTGCA 183 |||||||| | ||||| ||||| ||||| ||| ||||||| || |||||||||||||||| Sbjct 217 CCCGCAAGACCAACAAGGACATCACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCA 276 Query 184 TGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACC 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 TGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACC 336 Query 244 TTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTT 303 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 337 TTAGTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTT 396 Query 304 GTGTTGAATTCGAGTTAGAGC-A-T-------------GGATTTGTGTACCGTGAGCACG 348 |||||||||||||||||||| | | |||||||||||||||||||||| Sbjct 397 GTGTTGAATTCGAGTTAGAGGTAATAAACACAAAACACGGATTTGTGTACCGTGAGCACG 456 Query 349 GAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCG 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 457 GAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCG 516 Query 409 GATGCACCGATTCTGCTCAAGTGTTGAAGGAAGT-GCAAGAATGCAAGAAGGAGTACCCT 467 |||||||||| || |||||||||||||||||||| | |||||||||||||||||||||| Sbjct 517 GATGCACCGACTCCGCTCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCG 575 Query 468 AATGCCTTCATTAGGATCATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTC 527 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 576 GGCGCCTTCATTAGGATCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTC 635 Query 528 ATTGCCTACAAGCCCCCAAGCTTCACCGATGCTTAATTCCCTTTCT 573 ||||||||||||||||||||||||||||| |||||||| | ||||| Sbjct 636 ATTGCCTACAAGCCCCCAAGCTTCACCGAAGCTTAATTTCTTTTCT 681 > AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxylase small chain 1A | chr1:25048158-25049424 REVERSE LENGTH=1025 Length=1025 Score = 734 bits (397), Expect = 0.0 Identities = 508/561 (91%), Gaps = 9/561 (2%) Strand=Plus/Plus Query 18 ATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCAGCTCAAGCCACCATG 77 |||||||||||||||||||| || || || ||||| |||| || ||||| ||||| ||| Sbjct 176 ATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTCAGGCCACTATG 235 Query 78 GTCGCTCCATTCACCGG-CTTGAAGTCATCCGCTGCTTTCCCCGTCACCCGCAAGGCTAA 136 |||||||| |||| ||| ||| ||||| |||||||| ||||| | ||||||||||||||| Sbjct 236 GTCGCTCCTTTCAACGGACTT-AAGTCCTCCGCTGCCTTCCCAGCCACCCGCAAGGCTAA 294 Query 137 CAACGACATTACTTCTATCTCAAGCAATGGCGGAAGAGTTAGCTGCATGAAGGTGTGGCC 196 ||||||||||||||| ||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 295 CAACGACATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATGCAGGTGTGGCC 354 Query 197 ACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTTACTGACGT-CG 255 || |||||||||||||||||||||||||| |||||||| ||||||||||| || | || Sbjct 355 TCCGATTGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTTACCGA-TTCCG 413 Query 256 AATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTGTGTTGAATTCG 315 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 414 AATTGGCTAAGGAAGTTGACTACCTTATCCGCAACAAGTGGATTCCTTGTGTTGAATTCG 473 Query 316 AGTTAGAGCATGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTACGATGGAC 375 |||| ||||| ||||||||||||||||||||||| ||| | ||||||||||| ||||||| Sbjct 474 AGTTGGAGCACGGATTTGTGTACCGTGAGCACGGTAACTCACCCGGATACTATGATGGAC 533 Query 376 GGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGATTCTGCTCAAGTGTTGA 435 ||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||| Sbjct 534 GGTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCGCTCAAGTGTTGA 593 Query 436 AGGAAGTGCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGATCATCGGATTCG 495 |||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 594 AGGAAGTGGAAGAGTGCAAGAAGGAGTACCCCAATGCCTTCATTAGGATCATCGGATTCG 653 Query 496 ACAACAACCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCCCAAGCTTCACCG 555 |||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 654 ACAACACCCGTCAAGTCCAGTGCATCAGTTTCATTGCCTACAAGCCACCAAGCTTCACCG 713 Query 556 ATGCTTAATT-CCCTTT-CTT 574 | |||||| |||||| ||| Sbjct 714 --G-TTAATTTCCCTTTGCTT 731 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28683697937 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5