BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494137 Length=787 Score E Sequences producing significant alignments: (Bits) Value AT5G38410.3 | Symbols: | Ribulose bisphosphate carboxylase (sm... 1147 0.0 AT5G38420.1 | Symbols: | Ribulose bisphosphate carboxylase (sm... 996 0.0 AT5G38430.1 | Symbols: | Ribulose bisphosphate carboxylase (sm... 933 0.0 AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxyla... 741 0.0 > AT5G38410.3 | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15377173-15378416 REVERSE LENGTH=999 Length=999 Score = 1147 bits (621), Expect = 0.0 Identities = 749/807 (93%), Gaps = 24/807 (3%) Strand=Plus/Plus Query 1 GGTTCTCACTATATAAAGATGACcaa-accaata-gacaaacaagtaagtaagtgaaaag 58 |||||||| ||||||||||||| ||| |||| || || |||||||| ||||||| ||| | Sbjct 20 GGTTCTCATTATATAAAGATGA-CAACACCAGTAGGA-AAACAAGTCAGTAAGT-AAACG 76 Query 59 agcaaaagaagaagagaaacaacaagaagaagtAATGGCTTCCTCTATGCTCTCCTCGGC 118 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 77 AGCAAAAGAAGAAGAGAAACAACAAGAAGTAGTAATGGCTTCCTCTATGCTCTCCTCCGC 136 Query 119 CGCTGTGGTTACCTCCCCGGCTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTC 178 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 137 CGCTGTGGTTACATCCCCGGCTCAGGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTC 196 Query 179 ATCCGCTGCTTTCCCGGTCACCCGCAAGGCCAACAACGACATTACTTCCATCGCAAGCAA 238 ||||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||| Sbjct 197 ATCCGCTGCATTCCCGGTCACCCGCAAGACCAACAAGGACATCACTTCCATCGCAAGCAA 256 Query 239 CGGGGGAAGAGTTAGCTGCATGAAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGAC 298 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 257 CGGGGGAAGAGTTAGCTGCATGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGAC 316 Query 299 TTTATCTTACCTCCCTGACCTTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCT 358 | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 317 TCTATCTTACCTCCCTGACCTTAGTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCT 376 Query 359 CCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTTAGAG--------CAC-------GG 403 |||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 377 CCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTTAGAGGTAATAAACACAAAACACGG 436 Query 404 ATTTGTGTACCGTGAACACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAAT 463 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 437 ATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAAT 496 Query 464 GTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTCAAGTGTTGAAGGAAGT-GCAAG 522 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 497 GTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTCAAGTGTTGAAGGAAGTTG-AAG 555 Query 523 AATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGATCATCGGATTCGACAACAACCGTC 582 ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 556 AATGCAAGAAGGAGTACCCGGGCGCCTTCATTAGGATCATCGGATTCGACAACACCCGTC 615 Query 583 AAGTCCAATGCATCAGTTTCATCGCCTACAAGCCCCCAAGCTTCACCGATGCTTAATTCC 642 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | Sbjct 616 AAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCCCAAGCTTCACCGAAGCTTAATTTC 675 Query 643 CTTTCTAAAACATTCATATAAATTATCTCTACTCATTTCATT-CCTATTGTCTGTGTTGT 701 |||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||| | Sbjct 676 TTTTCTAAAACATTCTTATGAATTATCTCTGCTCATTTCATTTCCTATTGTCTGTGTTCT 735 Query 702 TTT-CTCTTTATGAGACATTTTATATCGGATTGTCAAATGTCTGATTTATGAATATGTAT 760 ||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 736 TTTTCTCTTTATGAGACAATTTCTATCGGATTGTCAAATGTCTGATTTATGAATATGTAA 795 Query 761 TTTATATATTCTTGCGTCTTGATTTTT 787 ||||||||| | ||||||||||||||| Sbjct 796 TTTATATATCCGTGCGTCTTGATTTTT 822 > AT5G38420.1 | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15380945-15382035 REVERSE LENGTH=861 Length=861 Score = 996 bits (539), Expect = 0.0 Identities = 597/625 (96%), Gaps = 3/625 (0%) Strand=Plus/Plus Query 35 acaaacaagtaagtaagtgaaaagagcaaaagaagaagagaaacaacaagaagaagtAAT 94 ||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| Sbjct 1 ACAAACAAGTAAGTAAGAGAAAA-ACCAAAAGAAGAAGAGAAACAACAAGAAGAAGTAAT 59 Query 95 GGCTTCCTCTATGCTCTCCTCGGCCGCTGTGGTTACCTCCCCGGCTCAAGCCACCATGGT 154 ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 60 GGCTTCCTCTATGTTCTCCTCCACCGCTGTGGTTACCTCCCCGGCTCAAGCCACCATGGT 119 Query 155 CGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCGGTCACCCGCAAGGCCAACAA 214 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 120 CGCTCCATTCACCGGCTTGAAGTCATCCGCTTCTTTCCCGGTCACCCGCAAGGCCAACAA 179 Query 215 CGACATTACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCATGAAGGTGTGGCCACC 274 |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 180 CGACATTACTTCCATCACAAGCAACGGAGGAAGAGTTAGCTGCATGAAGGTGTGGCCACC 239 Query 275 AATCGGAAAGAAGAAGTTTGAGACTTTATCTTACCTCCCTGACCTTACTGACGTCGAATT 334 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| Sbjct 240 AATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTTAGTGACGTTGAATT 299 Query 335 GGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTT 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTT 359 Query 395 AGAGCACGGATTTGTGTACCGTGAACACGGAAACACTCCCGGATACTACGATGGACGGTA 454 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || Sbjct 360 GGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTATGATGGACGATA 419 Query 455 CTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTCAAGTGTTGAAGGA 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 CTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTCAAGTGTTGAAGGA 479 Query 515 AGT-GCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGATCATCGGATTCGACA 573 ||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 480 AGTTG-AAGAATGCAAGAAGGAGTACCCTGGCGCCTTCATTAGGATCATCGGATTCGACA 538 Query 574 ACAACCGTCAAGTCCAATGCATCAGTTTCATCGCCTACAAGCCCCCAAGCTTCACCGATG 633 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 539 ACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCCCAAGCTTCACCGAAG 598 Query 634 CTTAATTCCCTTTCTAAAACATTCA 658 |||||| |||||||| || ||||| Sbjct 599 CTTAATCCCCTTTCTGGAATATTCA 623 > AT5G38430.1 | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15384117-15385247 REVERSE LENGTH=808 Length=808 Score = 933 bits (505), Expect = 0.0 Identities = 554/578 (96%), Gaps = 2/578 (0%) Strand=Plus/Plus Query 82 aagaagaagtAATGGCTTCCTCTATGCTCTCCTCGGCCGCTGTGGTTACCTCCCCGGCTC 141 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 19 AAGAAGAAGTAATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCGGCTC 78 Query 142 AAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCGGTCACCC 201 ||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| Sbjct 79 AAGCCACCATGGTCGCTCCATTCACTGGTTTGAAGTCATCCGCTTCTTTCCCGGTCACCC 138 Query 202 GCAAGGCCAACAACGACATTACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCATGA 261 ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 139 GCAAGGCCAACAACGACATTACTTCCATCACAAGCAATGGGGGAAGAGTTAGCTGCATGA 198 Query 262 AGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTTTATCTTACCTCCCTGACCTTA 321 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 199 AGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTTA 258 Query 322 CTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTGTG 381 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 259 CTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAATGGATTCCTTGTG 318 Query 382 TTGAATTCGAGTTAGAGCACGGATTTGTGTACCGTGAACACGGAAACACTCCCGGATACT 441 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 319 TTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACT 378 Query 442 ACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTC 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 379 ACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTC 438 Query 502 AAGTGTTGAAGGAAGT-GCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGATC 560 |||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| Sbjct 439 AAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCGGGCGCCTTCATTAGGATC 497 Query 561 ATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTCATCGCCTACAAGCCCCCA 620 |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 498 ATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCCCA 557 Query 621 AGCTTCACCGATGCTTAATTCCCTTTCTAAAACATTCA 658 |||||||| ||||||||| ||| ||||| || ||||| Sbjct 558 AGCTTCACTGATGCTTAAATCCTTTTCTGGAATATTCA 595 > AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxylase small chain 1A | chr1:25048158-25049424 REVERSE LENGTH=1025 Length=1025 Score = 741 bits (401), Expect = 0.0 Identities = 514/568 (90%), Gaps = 9/568 (2%) Strand=Plus/Plus Query 82 aagaagaagtAATGGCTTCCTCTATGCTCTCCTCGGCCGCTGTGGTTACCTCCCCGGCTC 141 |||||||| ||||||||||||||||||||| || || || ||||| |||| ||||||| Sbjct 166 AAGAAGAA-CAATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTC 224 Query 142 AAGCCACCATGGTCGCTCCATTCACCGG-CTTGAAGTCATCCGCTGCTTTCCCGGTCACC 200 | ||||| ||||||||||| |||| ||| ||| ||||| |||||||| ||||| | |||| Sbjct 225 AGGCCACTATGGTCGCTCCTTTCAACGGACTT-AAGTCCTCCGCTGCCTTCCCAGCCACC 283 Query 201 CGCAAGGCCAACAACGACATTACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCATG 260 |||||||| ||||||||||||||||||||| |||||||||| |||||||||| ||||||| Sbjct 284 CGCAAGGCTAACAACGACATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATG 343 Query 261 AAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTTTATCTTACCTCCCTGACCTT 320 |||||||||| || || ||||||||||||||||||||| | |||||||| ||||||||| Sbjct 344 CAGGTGTGGCCTCCGATTGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTT 403 Query 321 ACTGACGT-CGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTG 379 || || | |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 404 ACCGA-TTCCGAATTGGCTAAGGAAGTTGACTACCTTATCCGCAACAAGTGGATTCCTTG 462 Query 380 TGTTGAATTCGAGTTAGAGCACGGATTTGTGTACCGTGAACACGGAAACACTCCCGGATA 439 ||||||||||||||| ||||||||||||||||||||||| ||||| ||| | |||||||| Sbjct 463 TGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGTAACTCACCCGGATA 522 Query 440 CTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGC 499 ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 523 CTATGATGGACGGTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCGC 582 Query 500 TCAAGTGTTGAAGGAAGTGCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGAT 559 ||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| Sbjct 583 TCAAGTGTTGAAGGAAGTGGAAGAGTGCAAGAAGGAGTACCCCAATGCCTTCATTAGGAT 642 Query 560 CATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTCATCGCCTACAAGCCCCC 619 ||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| || Sbjct 643 CATCGGATTCGACAACACCCGTCAAGTCCAGTGCATCAGTTTCATTGCCTACAAGCCACC 702 Query 620 AAGCTTCACCGATGCTTAATT-CCCTTT 646 ||||||||||| | |||||| |||||| Sbjct 703 AAGCTTCACCG--G-TTAATTTCCCTTT 727 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38278420014 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5