BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494209
Length=1052
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47650.1 | Symbols: ATNUDT2, ATNUDX2, NUDT2 | nudix hydrolas... 1727 0.0
AT5G47640.1 | Symbols: NF-YB2 | nuclear factor Y, subunit B2 | ... 132 8e-30
> AT5G47650.1 | Symbols: ATNUDT2, ATNUDX2, NUDT2 | nudix hydrolase
homolog 2 | chr5:19310192-19312438 REVERSE LENGTH=1121
Length=1121
Score = 1727 bits (935), Expect = 0.0
Identities = 1020/1060 (96%), Gaps = 10/1060 (1%)
Strand=Plus/Plus
Query 1 ACAGTTGCTTCACCACGAGGAACAGATCCATGTCTGCTTC---TTCCTCCGCTAATCCCA 57
||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 57 ACAGTTGCTCCACCACGAGGAACAGATCCATGTCTGCTTCTAGTTCCTCCACAAATCCCA 116
Query 58 TGTCCCGTGAGGA-G--GCAACACTGCTTCCGTCTGTTCAAGACAAGTACGGTGGCGTGA 114
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TGTCCCGTGAGGACGCAACAACACTGCTTCCGTCTGTTCAAGACAAGTACGGTGGCGTGA 176
Query 115 TGACGGAAATGACTCACCCCATGGATCCTtctctcttctccacacttctccgatcctctc 174
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TGACCGAGATGACTCATCCCATGGATCCTTCTCTCTTCTCCACACTTCTCCGATCCTCTC 236
Query 175 tctctACCTGGACTCTTCAGGGCAAGAAA-GGAGTGTGGATCAAATTGCCAAAGCAGCTT 233
| ||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||
Sbjct 237 TATCTACCTGGACTCTTCAGGGCAA-AAAGGGAGTGTGGATCAAGTTGCCAAAGCAGCTT 295
Query 234 ATCGGTCTTGCTGAAACTGCTGTTAAGGAAGGATTCTGGTTTCATCACGCGGAGAAAGAC 293
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 296 ATTGGTCTTGCTGAAACTGCTGTTAAGGAGGGATTCTGGTTTCACCACGCGGAGAAAGAC 355
Query 294 TACTTGATGCTTGTGTATTGGATTCCAAAAGAGGACCATACGCTTCCTGCCAATGCATCT 353
|||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||
Sbjct 356 TACTTGATGCTTGTCTATTGGATTCCCAAAGAAGACGATACGCTTCCTGCCAATGCATCT 415
Query 354 CACCGTGTTGGCATAGGTGCCTTTGTCATTAACCACAACAAAGAGGTGCTGGTGGTTCAA 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CACCGTGTTGGCATAGGTGCCTTTGTCATTAACCACAACAAAGAGGTGCTGGTGGTTCAA 475
Query 414 GAGAAGACAGGGAGATTTCAAGGCCAAGGTATCTGGAAGTTCCCCACCGGAGTTGTGAAT 473
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 476 GAGAAGACAGGGAGATTTCAAGGTCAAGGTATCTGGAAGTTCCCCACCGGAGTTGTGAAT 535
Query 474 GAGGGTGAAGACATCCATGATGGCTCAGTCAGAGAGGTGAAAGAAGAGACCGGAGTGGAT 533
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GAGGGTGAAGACATTCATGATGGCTCAGTCAGAGAGGTGAAAGAAGAGACCGGAGTGGAT 595
Query 534 ACAGAATTCGACCAAATATTGGCCTTCAGACAAACACACAAAGCGTTCTTTGGAAAGTCA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ACAGAATTCGACCAAATATTGGCCTTCAGACAAACACACAAAGCGTTCTTTGGAAAGTCA 655
Query 594 GATTTGTTCTTCGTGTGCATGTTAAAGCCCCTTTCTTTGGAGATCAATGCACAGGAGTCA 653
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 656 GATTTGTTCTTCGTGTGCATGTTAAAGCCCCTTTCTTTGGAGATCAACGCACAGGAGTCA 715
Query 654 GAGATTGAGGCAGCTCAGTGGATGCCTTGGGAGGAATACATAAAGCAACCATTTGTACAG 713
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 716 GAGATTGAGGCAGCTCAGTGGATGCCTTGGGAGGAATACATAAATCAACCATTTGTACAA 775
Query 714 AATTATGAGCTATTGAGGTACATGACAGACATTTGCTCTGCTAAAACCAAAGGAGACTAC 773
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 776 AATTATGAGCTATTGAGGTATATGACAGACATTTGCTCTGCTAAAACCAACGGAGACTAC 835
Query 774 GAAGGTTTCACTCCTCTCCGCGTCACCGCACCTGATCAACAAGGCAACTTGTACTACAAC 833
||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 836 GAAGGCTTCACTCCTCTCCGCGTCTCTGCACCTGATCAACAAGGCAACTTGTACTACAAC 895
Query 834 ACCCGCGACTTACATTCGCGCAATTGACCTTCTTTCTCAACAAACAGAGCTTTCTTCACA 893
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 896 ACCCGCGACTTACATTCGCGCAATTGACCTTCTTTCTCAACAAACAGAGCTTTCCTCACA 955
Query 894 GATTCTAACGAAGCTGGTTTCTTTGCTGCCTCTCTATGTAAGCATTTTGACACTTGAATC 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GATTCTAACGAAGCTGGTTTCTTTGCTGCCTCTCTATGTAAGCATTTTGACACTTGAATC 1015
Query 954 ACTACATAGCTCTCAGCTAAACATAAA-GACATCCCAAATGAAAACATTTGCATTCAATA 1012
|||||||| |||||| | ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1016 ACTACATAACTCTCACCAAAACATAAAAG-CATCCCAAATGAAAACATTTGCATTCAATA 1074
Query 1013 CAATGGCTTTAGTTACATACAAGATTCAATGAAGCAGATT 1052
||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CAATGGCTTTAGTTACATACAAGATTCAATGAAGCAGATT 1114
> AT5G47640.1 | Symbols: NF-YB2 | nuclear factor Y, subunit B2
| chr5:19309227-19310272 FORWARD LENGTH=1046
Length=1046
Score = 132 bits (71), Expect = 8e-30
Identities = 74/75 (99%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 978 AAAGACATCCCAAATGAAAACATTTGCATTCAATACAATGGCTTTAGTTACATACAAGAT 1037
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 AAAG-CATCCCAAATGAAAACATTTGCATTCAATACAATGGCTTTAGTTACATACAAGAT 988
Query 1038 TCAATGAAGCAGATT 1052
|||||||||||||||
Sbjct 987 TCAATGAAGCAGATT 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51590468969
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5