BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494214 Length=654 Score E Sequences producing significant alignments: (Bits) Value AT5G47610.1 | Symbols: | RING/U-box superfamily protein | chr5... 950 0.0 > AT5G47610.1 | Symbols: | RING/U-box superfamily protein | chr5:19301188-19301913 REVERSE LENGTH=726 Length=726 Score = 950 bits (514), Expect = 0.0 Identities = 577/607 (95%), Gaps = 5/607 (1%) Strand=Plus/Plus Query 1 AAGATGCGTTTGCTAGTAGAAGAAGTAGCTTCACCATTGCCCTCTGCTTCAACTCCAACA 60 ||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||||| Sbjct 12 AAGATGCGTTTGCTAGTAGCAGAAGCAGCTTCACCATTGTCCTCTGCTGCAACTCCAACA 71 Query 61 TGTAACTCTCATGCTTGCAGATGGAAGCCTTACTCAAACTCTACTGACTTCACAGCTAAT 120 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72 TGTAACTCTCATACTTGCAGATGGAAGCCTTACTCAAACTCTACTGACTTCACAGCTAAT 131 Query 121 GCATCAGTCCTTCTCATCCTTGTCATCTCTGCTCTCATTTGTGCTCTCTCTCTTTACGCT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132 GCATCAGTCCTTCTCATCCTTGTCATCTCTGCTCTCATTTGTGCTCTCTCTCTTTACGCT 191 Query 181 GCAATCCGTTGCTTTCTCCGACCAACCCTCGAGACTGAAGACGACCACAAGCCTGACCCT 240 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 GCAATTCGTTGCTTTCTCCGACCAACCCTCGAGACTGAAGACGACCACAAGCCTGACCCT 251 Query 241 GAAGCAGCTGCTTCATCCACTGCAACAACTCCTACGCTTGTCTACTCCTCCGACCTTGAA 300 ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 252 GAAGCAGCTGCTTCATCCACTCCAACAACTCCTACACTTGTCTACTCCTCCGACCTTGAA 311 Query 301 CTCGCAGGAGCTGAAGCAGAGTGTGCCATTTGCTTGTCGGAATTCGAACAAGGAGAGAGC 360 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 312 CTCGCAGGAGCTGAAGCAGAGTGTGCCATTTGCTTGTCGGAATTTGAACAAGGAGAAAGC 371 Query 361 ATCCAAGTGCTAGAGAAATGCCAACATGGTTTCCATGTTAAGTGTATCCACAAATGGCTC 420 || |||||||| |||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 372 ATTCAAGTGCTGGAGAAATGTCAGCATGGTTTCCATGTTAAGTGTATCCACAAATGGCTC 431 Query 421 TCTACTCGCTCCTCCTGTCCCACTTGCCGGACTTCTATCTTCACACAACACTCGGAAACA 480 ||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||| Sbjct 432 TCTACTCGCTCCTCCTGTCCCACTTGCAGAACTTCTATCTTCTCACAACACTCTGAAACT 491 Query 481 CCTTCAAGCCAGATCAATGCTTAGCTTCTTTATTTTTAATCTTGTCTTTTCCAAA-GCTT 539 ||||||||||| ||||||||||||||||||| |||| |||||||| ||||||||| |||| Sbjct 492 CCTTCAAGCCACATCAATGCTTAGCTTCTTT-TTTT-AATCTTGT-TTTTCCAAAAGCTT 548 Query 540 TAGAGTTGTATCATGTTTTGCTTGAGACTAGCCCTGTTTCTGTTTTGTATTATTAAGTAA 599 ||||||||||||||||||||||||||| || |||||| |||| | |||||||||| |||| Sbjct 549 TAGAGTTGTATCATGTTTTGCTTGAGATTA-CCCTGTATCTGCTCTGTATTATTAGGTAA 607 Query 600 CGTAGAC 606 ||||||| Sbjct 608 CGTAGAC 614 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31597278463 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5