BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494217 Length=2157 Score E Sequences producing significant alignments: (Bits) Value AT5G47560.1 | Symbols: ATTDT, ATSDAT, TDT | tonoplast dicarboxy... 3040 0.0 > AT5G47560.1 | Symbols: ATTDT, ATSDAT, TDT | tonoplast dicarboxylate transporter | chr5:19287369-19290465 REVERSE LENGTH=2267 Length=2267 Score = 3040 bits (1646), Expect = 0.0 Identities = 2014/2184 (92%), Gaps = 55/2184 (3%) Strand=Plus/Plus Query 1 TTAAAAACAGAATAAACAGAATGAACGGTGGTGATGTCACCGTCGCCGGTTCCGACGA-C 59 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 99 TTAAAAACGGAATAAACAGAATGAACGGTGGTGATGTCACCGTCGCCGGATCCGACGATC 158 Query 60 GTGAAATCTCCGCTTTTACCAGTCGTCCATAATGATGAACCATTCGAACGACAAACGGTG 119 ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 159 -TGAAATCTCCGCTCTTACCGGTCGTCCATAATGATGAACCATTCGAACGACAAACGGTG 217 Query 120 GGACAACAACTCCGGACAATATTCACGCCCAAGAATTGTTACATCGCTCTTGGTCCTCTT 179 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 218 GGACAACAACTTCGGACAATATTCACGCCCAAAAACTGTTACATCGCTCTTGGTCCTCTT 277 Query 180 CTTTGCGCCGTCGTGTGTCTATGCGTAGATCTCGGCGGAGATGACACGACGACGGCGAGG 239 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 278 CTTTGCGCCGTCGTGTGTCTATGCGTAGATCTCGGGGGAGATGAAACGACGACGGCGAGG 337 Query 240 AACATGCTCGGCGTTTTGGTGTGGATGTTCGCGTGGTGGTTGACGGAGGCCGTTCCGATG 299 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 338 AACATGCTCGGTGTTTTGGTGTGGATGTTCGCGTGGTGGTTGACGGAGGCCGTTCCGATG 397 Query 300 CCGATCACCTCCATGACGCCGCTCTTCCTCTTCCCTCTCTTTGGAATATCGGCGGCGGAT 359 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 398 CCGATCACCTCCATGACGCCGCTCTTCCTCTTCCCTCTCTTTGGTATATCGGCTGCGGAT 457 Query 360 GACGTGGCGAATTCTTACATGGATGACGTAATCTCCCTTGTCCTCGGCAGCTTCATACTC 419 ||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 458 GACGTAGCAAATTCTTACATGGATGACGTCATCTCCCTTGTACTCGGCAGCTTCATACTT 517 Query 420 GCTCTCGCCGTCGAACACTACAACATCCATCGCCGGCTCGCCCTTAACATAACGTTGGTG 479 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 518 GCTCTCGCCGTCGAACACTACAACATCCATCGCCGGCTTGCCCTTAACATAACGTTGGTG 577 Query 480 TTCTGCGTGGAGCCTCTAAACGCGCCGCTGCTTCTGCTTGGCATCTGCGCCACAACGGCG 539 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 578 TTCTGCGTGGAGCCGCTAAACGCGCCGCTACTTCTGCTTGGCATCTGCGCCACAACAGCG 637 Query 540 TTCGTGAGCATGTGGATGCACAACGTAGCAGCTGCGGTCATGATGATGCCAGTGGCTACG 599 ||||| |||||||||||||| |||||||||||||| |||||||||||||| || |||||| Sbjct 638 TTCGTAAGCATGTGGATGCATAACGTAGCAGCTGCAGTCATGATGATGCCTGTCGCTACG 697 Query 600 GGGATACTTCAGAGACTGCCCTCTTCATCATCGTCGACAGAAGTGGTGCATCCGGCCGTG 659 ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| Sbjct 698 GGGATACTTCAGAGACTGCCCTCGTCATCATCGACGACGGAAGTGGTGCATCCGGCCGTG 757 Query 660 GGGAAGTTTTGCAGAGCGGTGGTGTTAGGTGTGATATACTCTGCGGCGGTTGGTGGGATG 719 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 758 GGGAAGTTTAGCAGGGCGGTGGTGTTAGGTGTGATATACTCTGCGGCGGTTGGTGGGATG 817 Query 720 AGCACACTCACTGGAACAGGAGTGAATCTGATACTTGTTGGAATGTGGAAAAGCTATTTC 779 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 818 AGCACACTCACTGGAACAGGAGTGAATCTGATTCTTGTTGGAATGTGGAAAAGCTACTTC 877 Query 780 CCTGAGGCTGATCCAATCAGTTTTAGCCAATGGTTCTTCTTTGGCTTCCCGTTGGCTTTG 839 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 878 CCTGAGGCTGATCCGATCAGTTTTAGCCAATGGTTCTTCTTTGGCTTCCCATTGGCTTTG 937 Query 840 TGCATATTTGTGGTGCTTTGGTGTATTCTATGTGTTATGTATTGTCCTAAAGGAGCAGGA 899 |||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 938 TGCATATTCGTGGTGCTTTGGTGTGTTCTTTGTGTTATGTATTGTCCTAAAGGAGCAGGA 997 Query 900 CAAGCTCTTTCTCCTTATCTCCATAAATCTCATCTTAGGAGAGAGCTTGATTTGTTAGGA 959 |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 998 CAAGCTCTCTCTCCTTATCTCCATAAATCTCATCTCAGGAGAGAGCTTGATTTGTTAGGG 1057 Query 960 CCAATGAATTTCGCTGAGAAGATGGTCTTAGCCGTGTTTGGTGGGTTGGTTGTGTTGTGG 1019 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1058 CCAATGAACTTCGCTGAGAAGATGGTCTTAGCCGTGTTTGGTGGGTTGGTTGTGTTGTGG 1117 Query 1020 ATGACAAGAAATATAACAGATGACATCCCCGGCTGGGGTCGGATCTTCGACGGCCGGGCT 1079 |||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||| || Sbjct 1118 ATGACAAGGAATATAACTGATGATATCCCCGGCTGGGGTCGGATCTTCGCCGGCCGAGCC 1177 Query 1080 GGGGATGGAACCGTGAGTGTGATGATGGCGACATTGTTGTTTATTATCCCGAGCAAGATT 1139 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 1178 GGGGATGGAACCGTGAGTGTGATGATGGCGACATTGTTGTTTATCATCCCAAGCAATATT 1237 Query 1140 AAAAAAGGAGAGAAGCTAATGGATTGGAGCAAATGCAAGAAACTCCCATGGAACATTGTC 1199 ||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| Sbjct 1238 AAAAAAGGAGAGAAGCTAATGGACTGGAACAAATGCAAGAAACTACCATGGAACATTGTC 1297 Query 1200 TTGTTATTGGGAGCTGGATTCGCTATAGCCGATGGAGTACGCACCAGTGGCTTAGCTGAA 1259 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1298 TTGTTATTGGGAGCTGGATTCGCTATAGCCGATGGAGTACGCACCAGTGGCTTAGCTGAG 1357 Query 1260 GTCTTATCCAAAGGACTAGTCTTTCTCGAGACAGCTCCTTACTGGGCCATTGCTCCAACC 1319 ||||||||||||||||| ||||| || || || |||||||||||||||||||||||||| Sbjct 1358 GTCTTATCCAAAGGACTTGTCTTCCTTGAAACGGCTCCTTACTGGGCCATTGCTCCAACG 1417 Query 1320 GTTTGTCTCATCGCCGCTACCATCACAGAGTTCACCTCAAACAACGCAACCACTACATTG 1379 ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1418 GTTTGCCTCATCGCTGCTACCATCACAGAGTTCACTTCAAACAACGCAACCACTACATTG 1477 Query 1380 TTGGTTCCGTTACTGATCGAGATTGCAAAGACCATGGGGATCCATCCTTTGCTCTTGATG 1439 |||||||||||||| ||||| || ||||||| |||||||||||||||||||||||||||| Sbjct 1478 TTGGTTCCGTTACTCATCGAAATCGCAAAGAACATGGGGATCCATCCTTTGCTCTTGATG 1537 Query 1440 GTCCCTGGTGCCATAGGGGCTCAGTTCGCTTTCTTGCTCCCCACGGGAACACCTTCTAAC 1499 || || || ||||| ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 1538 GTTCCAGGAGCCATTGGGGCTCAGTTCGCTTTCTTGCTTCCCACGGGAACACCCTCTAAC 1597 Query 1500 GTCGTTGGGTTCACAACAGGGCATATAGAGATCAAAGACATGATCAAAACAGGCTTGCCT 1559 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1598 GTCGTTGGGTTCACGACAGGGCATATAGAGATCAAAGACATGATCAAGACAGGCTTGCCT 1657 Query 1560 CTCAAGATCGCTGGAACCATCTTTCTCTCCATCTTGATGCCCACTCTTGGGGCTTACGTT 1619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1658 CTCAAGATCGCTGGAACCATCTTTCTCTCCATCTTGATGCCCACTCTTGGGGCTTACGTT 1717 Query 1620 TTTGCATCAAAGGGAGGAGTTTAGTTCTACGAGCGAAGCACAAGAACATATGGACACTAT 1679 |||||||||| ||||||||||||||||||| ||| |||||||||| ||| | |||| || Sbjct 1718 TTTGCATCAATGGGAGGAGTTTAGTTCTACAAGCCAAGCACAAGACCATGT--ACACAAT 1775 Query 1680 TGATTCATTGTACTATAATGT--AG-A---TA-TA--TATGGTCA-ATGA-AT-G--A-T 1724 ||||| ||||||||||| ||| | | || || |||| | | || | || | | | Sbjct 1776 TGATTTATTGTACTATATTGTTTACTACCGTAATACATATG-T-AGAT-ATATAGTCAAT 1832 Query 1725 GGAATGGGAAATTTAGATGTGGTCGCCAAAATTCACAAAATCGGCCCATTTTTGTAACCC 1784 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 1833 GGAATGGGAAATTTAGATGAGGTC---AAAATTCACAAAATCGGCCCATTTTTGTAACCC 1889 Query 1785 GCCTGATTATAGTTTCCGGTACGATTGCTTTCTTTAGTGCGTCCAACGTAC-GGATAAGT 1843 ||| |||||||||||||||||| |||||||||||| |||| |||||||||| || ||| | Sbjct 1890 GCCCGATTATAGTTTCCGGTACCATTGCTTTCTTTTGTGCTTCCAACGTACCGG-TAACT 1948 Query 1844 TTGGTCtttttttttttttacttt--t-tctaaatttttA-GGTTAATTAATACAGATTT 1899 |||||| ||||||||||| ||| | | || || | || | | ||||||||||| Sbjct 1949 TTGGTCCCTTTTTTTTTTTG-TTTGGTGTGTATATGAAAAAGGGT--T-AATACAGATTT 2004 Query 1900 GTGTGTTCTTCTTCTTTACTAGT-GCCACTAGTGGCATATCCAGCG-G---TCCAACTTT 1954 |||||||||||||| | || | | || |||||||||| |||||||| | |||||| Sbjct 2005 GTGTGTTCTTCTTCCTAACAA-TAGCAACTAGTGGCAAATCCAGCGCGCGGTCCAAC--- 2060 Query 1955 ACTGACCATACCATACCACGTCATTGTCCAGCGTGTCTTCTTCTGTTTCCGGTTTTCTAC 2014 ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2061 -CTGGCCATACCATACCACGTCATTGTCCAGCGTGTCTTCTTCTGTTTTCGGTTTTCTAC 2119 Query 2015 AAACTCAAAAAGCAAAGAAGaaaaaaaaaaCATTAATGCATGGTTTGTAACG-CTTGCTT 2073 |||| |||||||||||||| || |||| ||| |||||||||||| ||||| ||||||| Sbjct 2120 AAACACAAAAAGCAAAGAA-AACAAAA---CATCAATGCATGGTTTATAACGTCTTGCTT 2175 Query 2074 TTTAATTAGTTTTTGTCCTTTACACTCATTTATGTTATTTCTTTGTCCTTTGCTATATAC 2133 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 2176 TTTAATTAGTTTTTGTCCTTTACACTCATTTATGTTCTTTCTTTGTCCTTTGCTATACAC 2235 Query 2134 TGGAGTACTTGTCTATTAAATAAT 2157 | | |||||||||| |||||| Sbjct 2236 T--A---CTTGTCTATTGAATAAT 2254 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 106977361395 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5