BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494259
Length=893
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47190.1 | Symbols: | Ribosomal protein L19 family protein ... 1304 0.0
AT4G17560.1 | Symbols: | Ribosomal protein L19 family protein ... 501 5e-141
> AT5G47190.1 | Symbols: | Ribosomal protein L19 family protein
| chr5:19164246-19166107 REVERSE LENGTH=919
Length=919
Score = 1304 bits (706), Expect = 0.0
Identities = 851/916 (93%), Gaps = 29/916 (3%)
Strand=Plus/Plus
Query 1 TCTTTACTCTGGTTTCGAGTGTAGGGGTAGTGCAAACATGGCGACGAGCTCTCATCTTCT 60
|||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||
Sbjct 9 TCTTTACTCTGGTTTCGAGT-T-TGGGTTGTGCAAACATGGCGACGAGCTCTCATCTTCT 66
Query 61 TCCTCAGACATTGCATATGATGCCGAGAATCCCTACTTTCTCGTCGAAGAATTTAGGGGT 120
||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||
Sbjct 67 TCCTCAGGCATTGCATATGATACCGAGAACCCCTTCTTTCTCGTCGAAGAATTTAGGGGT 126
Query 121 TTCTTCAATTCTACCACGAGCATCATCAATCAACTCAAGATTATCAGTTTCTA------- 173
|||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 127 TTCTTCAATTCTACCACGAGCATCATCAGTGAACTCAAGACTATCAGTTTCTAGGGTTTT 186
Query 174 --TGAATCATTCTAGCTCCAATTTTGGTTTCGCCATCGATTCCAAGAAGAGAAGAGAGTT 231
| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 187 TCTCAATCATTCGAGCTCCAATTTTGGTTTCGCCATCGATTCCAAGAAGAGAAAAGAGTT 246
Query 232 GATCGCTAAAGCTGAAGAGAGTACTGAAGGTGAAACTGAGGCAGTTGTGGAGAATGTTGT 291
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 247 TATCGCTAAAGCTGAAGAGAGTACTGAAGGTGAAACTGAGGCTGTTGTGGAGAATGCTGT 306
Query 292 TGAAACT------G-A--AG--GG-GAAGCTGCTGTGGCGGAGGAGGAAGCTAAAACTCC 339
||||||| | | || || ||||| |||| |||| ||||||||||||| ||||
Sbjct 307 TGAAACTGAAGCGGAAGGAGAAGGAGAAGCCACTGTTGCGGCGGAGGAAGCTAAACCTCC 366
Query 340 GAGGAAGGCGAGAGTCAAGCTCGGAGATATCATGGGAATATTGAACAAGAAAGCTATTGA 399
| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 367 GTGGAAGACGAGAGTCAAGCTCGGAGATATCATGGGGCTACTGAACAAGAAAGCTATTGA 426
Query 400 GGTTGCAGAGAAAGTAAGACCGGTTCCTGGACTTAGGACAGGGGATATTGTAGAAATCAA 459
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 427 GGTTGCAGAGACTGTAAGACCGGTTCCTGGACTTAGGACTGGGGATATTGTAGAAATCAA 486
Query 460 GCTGGAAGTTCCTGAGAACAAACGTAGGCTATCTATCTACAAAGGTATTGTGATGTCTAG 519
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 ACTGGAAGTTCCTGAGAACAAACGTAGGCTATCTATCTACAAAGGTATTGTGATGTCTAG 546
Query 520 ACAAAATGCAGGCATCCACACTACTATTCGTATCCGGAGGATTATTGCAGGCATTGGTGT 579
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 547 ACAAAATGCAGGCATCCACACTACTATCCGTATCCGGAGGATTATTGCAGGCATTGGTGT 606
Query 580 TGAAATCGTCTTTCCTATATACTCTCCCAACATAAAGGAGATAAAAGTGGTAAGTCACAG 639
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TGAAATCGTCTTTCCCATATACTCTCCCAACATAAAGGAGATAAAAGTGGTAAGTCACAG 666
Query 640 GAAAGTGAGAAGAGCAAGACTTTACTATCTGAGGGACAAACTTCCTCGTCTCTCAACTTT 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAAAGTGAGAAGAGCAAGACTTTACTATCTGAGGGACAAACTTCCTCGTCTCTCAACTTT 726
Query 700 TAAATGATCACCAAAACCCAACACCAGTCTTGTCTTGTGTTGTTACCTTCAATCTCCAAA 759
||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||
Sbjct 727 TAAATGATCACCAAA-CCCAACACCAGTCTTGTCTTGTGTTGT--C-TTCAATCTCCAAA 782
Query 760 GGTAG-TAGCTACtctcttt-ctcttgtaataattgtttgtttgttttgtcttttggatt 817
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 783 GGTAGCTAGCTACTCTCTTTTCTCTTGTAATAATTGTTTGTTTGTTTCGTCTTTTGGATT 842
Query 818 tcatttcttttcatgtaatttACAGTAACAGTGCTCTAAGAAAAGTAAATCAATGTTGAT 877
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 843 TCATTTCTTTTCATGTAATTTACAGTAACAGTAATTTAAGAAAAGTAAATCAATGTTGAT 902
Query 878 TATTTTGATCTTGAGT 893
| ||||||||||||||
Sbjct 903 TGTTTTGATCTTGAGT 918
> AT4G17560.1 | Symbols: | Ribosomal protein L19 family protein
| chr4:9780279-9782183 FORWARD LENGTH=1173
Length=1173
Score = 501 bits (271), Expect = 5e-141
Identities = 558/694 (80%), Gaps = 29/694 (4%)
Strand=Plus/Plus
Query 38 ATGGCGACGAGCTCTCATCTTCTTCCTCAGACATTGCATATGATGCCGAGAATCCCTACT 97
||||||| ||||| ||||| |||||||||| ||||||||||||| || |||| ||||||
Sbjct 65 ATGGCGATGAGCTTTCATCGTCTTCCTCAGGCATTGCATATGATACCCAGAAACCCTACG 124
Query 98 TTCTCGTCGAAGAATTTAGGGGTTTCTTCAATTCTACCACGAGCATCATCAAT-CA-ACT 155
|| ||||||||||||||| ||||||| ||||| | | ||| |||| || | ||
Sbjct 125 CAATCATCGAAGAATTTAGGGTTTTCTTCGTTTCTATCGTGTGCACCATCGATGGATTCT 184
Query 156 C--A-A-GA-TTATC-A-G-TTTCTATGAATCATTCTAGCTCCAATTTTGGTTTCGCCA- 206
| | | | || || | | ||||| |||||||| | |||| || ||||| ||| ||
Sbjct 185 CGTATATCAGTT-TCTAGGCTTTCTCTGAATCATCCCGGCTCGAAATTTGGGTTC-TCAC 242
Query 207 TCGATTCCAAGAAGAGAAGA-GAGTTGATCGCTAAAGCTGAAG-A-G-AGTACTGAAGGT 262
||||| | | | ||||| | ||||| |||| || ||| |||| | | | || |||| |
Sbjct 243 TCGATACTAGGGTGAGAA-ATGAGTTTATCGTTAGAGCAGAAGAAGGTAACACAGAAGCT 301
Query 263 GAAACTGAGGCAGTTG-TGGAGAATGTTGTTGAAACTGAAGGGGAAGCTGCT-GTGGCGG 320
||| |||| | | ||| || ||| | | ||| || ||| |||| || | | || |
Sbjct 302 GAATCTGAAGAATTTGTTGCTGAA-ATCGCTGATACGGAA--GGAA-ATG-TAGAGGAAG 356
Query 321 AGGAGGAAGCTAAAACTCCGAGGAAGGCGA-GAGTCAAGCTCGGAGATATCATGGGAATA 379
|| ||||||||| || | || || | | || |||||||||||||| ||||||| |||
Sbjct 357 TGGTCGAAGCTAAACCTACAAGAAAACCTAGGA-TCAAGCTCGGAGATGTCATGGGGATA 415
Query 380 TTGAACAAGAAAGCTATTGAGGTTGCAGAGAAAGTAAGACCGGTTCCTGGACTTAGGACA 439
||||| ||||||| |||||||| ||||||||||| ||||| ||||| | | | ||||||
Sbjct 416 CTGAACCAGAAAGCAATTGAGGTAGCAGAGAAAGTGAGACCTGTTCCAGAAATCAGGACA 475
Query 440 GGGGATATTGTAGAAATCAAGCTGGAAGTTCCTGAGAACAAACGTAGGCTATCTATCTAC 499
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 476 GGAGATATTGTAGAAATCAAATTGGAAGTTCCTGAGAACAAACGTAGGCTATCTATCTAC 535
Query 500 AAAGGTATTGTGATGTCTAGACAAAATGCAGGCATCCACACTACTATTCGTATCCGGAGG 559
||||| || |||||||| ||||||||||||||||| |||||||| |||||||| |||||
Sbjct 536 AAAGGCATAGTGATGTCGAGACAAAATGCAGGCATACACACTACCATTCGTATTCGGAGA 595
Query 560 ATTATTGCAGGCATTGGTGTTGAAATCGTCTTTCCTATATACTCTCCCAACAT-AAAGGA 618
|||||||| || || ||||||||||| || ||||| ||||||||||||||||| |||| |
Sbjct 596 ATTATTGCGGGTATCGGTGTTGAAATTGTGTTTCCCATATACTCTCCCAACATCAAAG-A 654
Query 619 GATAAAAGTGGTAAGTCACAGGAAAGTGAGAAGAGCAAGACTTTACTATCTGAGGGACAA 678
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 655 GATAAAAGTGGTGAGTCACAGGAAAGTAAGAAGAGCAAGGCTTTACTATCTGAGGGACAA 714
Query 679 ACTTCCTCGTCTCTCAACTTTTAAATGATCACCA 712
||||||||||| || ||||| || ||| |||||
Sbjct 715 GCTTCCTCGTCTGTCCACTTTCAAGTGAACACCA 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43603239596
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5