BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494293 Length=1685 Score E Sequences producing significant alignments: (Bits) Value AT5G46840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2399 0.0 > AT5G46840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:19005601-19007770 FORWARD LENGTH=1717 Length=1717 Score = 2399 bits (1299), Expect = 0.0 Identities = 1538/1645 (93%), Gaps = 50/1645 (3%) Strand=Plus/Plus Query 1 ctctctctctctcttcctcttctctcATTGAAATCGGACGACGATGGGGAAGAAGAAGTC 60 ||||| |||| ||||||||||||||||||||||||| |||| ||||||||||||||| || Sbjct 8 CTCTCCCTCTTTCTTCCTCTTCTCTCATTGAAATCGAACGAGGATGGGGAAGAAGAAATC 67 Query 61 GAAGGAAACGGAGACGGAATCTCTAAACGATGAATCTCAGACCAAATCAGGCATCTTCTC 120 ||||| ||||||| ||||||||| |||||||||||||||| | || |||||||| Sbjct 68 GAAGGTAACGGAGCCGGAATCTCAAAACGATGAATCTCAG-----A-CA---ATCTTCTC 118 Query 121 TACTCTCTTCTCCGGCGAGGTTGCTAAAGGCGAAACTTCTGGCTTTGCGAGTCTCTTCTC 180 |||||||||||||||||||||| ||| | | ||||||||||||||||||||||| Sbjct 119 CACTCTCTTCTCCGGCGAGGTTG--AAA---G---C-TCTGGCTTTGCGAGTCTCTTCTC 169 Query 181 CGATGATAACCCTTTCCGGCGaaaaaaaCCTCAAGAAATCAAAGAGTCGTCAAGTCCCGA 240 || |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || Sbjct 170 CGCTGATAACCCTTTCCGGCGAAAACAACCTCAAGAAATCAAAGAGTCGTCAATTCCTGA 229 Query 241 TGAGAAGAAAGGGGATAAACGAAATGCAGAGAACGAAGAAG--G-AGAAGAAACAGTTTT 297 ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| Sbjct 230 TGAGAAGAAAGGGGATAAACGAAATGCAGAGAACGAAGAAGAAGAAGAAGAAACAGATTT 289 Query 298 GCCTGTGAAGACGAAGAAATCTAAAAAGGAGAAAAAA-CTTACAGATTCCGGCGACGATG 356 |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 290 GCCTGTGAAGACGAAGAAATCTAAAAAGGA-AAAAAAGCTTACAGATTCCGGCGAC---- 344 Query 357 GTGTTGAGAAAGAGACGAATTT-GGATGTTGTAGAAGAAACTGGGTTGGATTCAAAGAGG 415 |||||||||||| |||| ||| | ||||||||||| |||||||| |||||||||| Sbjct 345 -----GAGAAAGAGACG-ATTTCGGAGGCTGTAGAAGAAAGTGGGTTGGTTTCAAAGAGG 398 Query 416 AAGAAAAGgaagagagatgagattgagaacgaatacgagacgaagaagtatggaagcgtt 475 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 399 AAGAAGAGGAAGAGAGATGAGATTGAGAACGAATACGAGACGAAGAAGTATGGAAGCGTT 458 Query 476 --ga-g--a-agaagaaggttggtgagaagaggaagaaagctgatgaagTAGCTGATACA 529 || | | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 459 GAGATGAAAGAGAAGAAGGTTGGTGAGAAGAGGAAGAAAGCTGATGAAGTAGCTGATACA 518 Query 530 ATGGTTTCAAAGGAAGGTTTTGATGATGAGAGTAAGCTTCTTAGAACTGTTTTCGTTGGG 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 ATGGTTTCAAAGGAAGGTTTTGATGATGAGAGTAAGCTTCTTAGAACTGTTTTCGTTGGG 578 Query 590 AATTTGCCATTGAAGGTTAAGAAAAAAGTCATCTTGAAGGAATTTAGTAAATTCGGTGAG 649 |||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 579 AATTTGCCTTTGAAGGTTAAGAAAAAAGTCATCTTGAAGGAGTTTAGTAAATTTGGTGAG 638 Query 650 GTTGAATCTGTGAGGATACGCTCTGTGCCAATTGTCGATTCGAAGAGGACAAGGAAAGGA 709 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 639 GTTGAATCTGTGAGGATACGCTCTGTGCCTATTGTTGATTCGAAGAGGACAAGGAAAGGA 698 Query 710 GCTATTATGTTGAAACAAATCAATGAGAAAGCTTCAAGTGTTCATGCTTATGTTGTGTTT 769 ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 699 GCTATAATGCTGAAACAAATCAATGAGAAAGCTTCAAGTGTTCATGCTTATGTTGTGTTT 758 Query 770 GAAACAGAGCAATCTGCTG-AGGCTTCTCTGGCTCATAACATGTCTCTGATTGATGGGAA 828 ||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| Sbjct 759 GAAACAGAGCAATCTGCTGCAG-CTTCTCTGGCACATAACATGTCTCTGATTGATGGGAA 817 Query 829 TCATGTCCGCGTTGATAGAGCATGTCCGCCTCGTAAGAAACAGAAAGGTCAGGATGATAC 888 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 818 TCATGTCCGCGTTGATAGAGCATGTCCGCCTCGTAAGAAACAGAAAGGGCATGATGATAC 877 Query 889 TCATTTGTATGATCCTAAGAGGACAGTCTTTATGGGTAATCTCCCTTTTGATGTGAAGGA 948 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 878 TCATTTGTATGATCCTAAGAGGACAGTCTTTATGGGTAATCTCCCTTTCGATGTGAAGGA 937 Query 949 CGAGGAAGTGTATCAACTGTTTACGGGTAAGAGTAATCTGGAGAACAGTATAGAAGCTGT 1008 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 938 CGAGGAAGTGTATCAACTGTTTACGGGTAAGAGTAATCTGGAGAACAGTATAGAAGCTGT 997 Query 1009 TCGTGTTATTAGAGATCCTCACTTGAACATTGGGAAAGGAATAGCTTACGTCTTGTTTAA 1068 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 998 TCGTGTCATTAGAGATCCTCACTTGAACATTGGGAAAGGAATAGCTTACGTCTTGTTTAA 1057 Query 1069 AACACGGGAAGCTGCAAATCTCGTAATCAAGAAAGGATATTTGAAGCTTAGAGAAAGAGA 1128 ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 1058 AACACGGGAAGCTGCAAATCTCGTACTCAAGAAAGGATACTTGAAGCTTAGAGAAAGAGA 1117 Query 1129 GTTACGGATTTCTCGAGTCAAACCTGATGCAACGCCATCAAAGAGAAAGAGCAATCCTTC 1188 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || Sbjct 1118 GTTACGGATTTCTCGAGTCAAACCTGAT--A-CGCCATCAAAGAGAAAGAGCAATCCGTC 1174 Query 1189 TGAAGCTTACTCGCCGGCCCAGAAAAGACTGCAAAAGGACAAAGTGGTCACACCAACTCC 1248 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1175 TGAAGCTTACTCGCCGGCCCAGAAAAGACTGCAGAAGGACAAAGTGGTCACACCAACTCC 1234 Query 1249 TACGGGGAAGGCTAATCTTTCATATCAAGGTGTAAGAGCTTCAAAATCTGGTGATGATAA 1308 || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1235 AACAGGGAAGGCTAATCTTTCATATCAAGGTGTACGAGCTTCAAAATCTGGTGATGATAA 1294 Query 1309 GAAGA-ATCCTTATCAGAAAAGCCCCGCACAGGCAAAGATGAGACCTAGAGGTAGCAGCA 1367 ||| | | ||||||||||||||| |||| ||| ||||||||||||||||||||||||||| Sbjct 1295 GAAAACA-CCTTATCAGAAAAGCTCCGCGCAGACAAAGATGAGACCTAGAGGTAGCAGCA 1353 Query 1368 GCAATGAAGACAACAAAAAATCTGGGAATAATAGTGCTTTGAAGCAGCGAAGTCAGAAGC 1427 ||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||| Sbjct 1354 GCAATGA---CAACAAAAAATCTGGGAATAATAGTGCTTCAAAGGAAAGAAGTCAGAAGC 1410 Query 1428 GGCCAGCGGTTGCAGCAAGAAAGGCGAAAGCAAACTCAAAAGGTTCGAAAGAGAGCGGTG 1487 | ||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 1411 GACCAGCTGTTGCAGCAAGAAAGGCGAAAGCAAACGCAAAAGGTTCAAAAGAGAGCGGTG 1470 Query 1488 GTAAGCGATTTGCAGGGACTAAGCGTAAACAAGAAAACCGAACGCCTGAAAGCTTCTCTA 1547 ||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 1471 GTAAGCGGTTTGCAGGGACAAAGCGTAAACAAGAAAACCGGACGCCTGAAAGCTTCTCTA 1530 Query 1548 AGAAGAAGAAAACAAAACGGTTTTAGGCGGTTTCTTTCAACCATAATGGTGAACCTCTTT 1607 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1531 AGAAGAAAAAAACAAAACGGTTTTAGACGGTTTCTTTCAACCATAATGGTGAACCTCTTT 1590 Query 1608 CATCTTCCTTAGTTTTGATACTAGT 1632 | ||||||||||||||||||||||| Sbjct 1591 CTTCTTCCTTAGTTTTGATACTAGT 1615 Score = 93.5 bits (50), Expect = 6e-18 Identities = 52/53 (98%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 1633 TGATATACTGTAATGTTGCAACAATTATGATTTCGTGCAAGTTTAAAAGGAAA 1685 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1652 TGATATACTGTAATGTTGCAACAATTATGTTTTCGTGCAAGTTTAAAAGGAAA 1704 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83282704155 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5