BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494306 Length=1019 Score E Sequences producing significant alignments: (Bits) Value AT5G46730.1 | Symbols: | glycine-rich protein | chr5:18964012-... 1463 0.0 > AT5G46730.1 | Symbols: | glycine-rich protein | chr5:18964012-18965068 FORWARD LENGTH=1057 Length=1057 Score = 1463 bits (792), Expect = 0.0 Identities = 969/1049 (92%), Gaps = 33/1049 (3%) Strand=Plus/Plus Query 1 AAACACAATGGTTTCTCTCAAAGCTTTCTCAACTGTCTTTTTTCTTATACTCGGTGTTAG 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 12 AAACACAATGGTTTCTCTCAAAGCTTTCTCAACTGTGTTTTTTCTTATACTCGGCGTTAG 71 Query 61 CATTTGCTACGCCACTAGCCGCAATCTTTTGAACTACGGAGAAGCTGCTGGCggtgcagg 120 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| Sbjct 72 CATTTGCTACGCCACTAGCCGCAATCTTTTGAACTACGGCCAAGCTTCTGGCGGTGGAGG 131 Query 121 aca---tggtggt---gg---t------g-gag--gt----g-ca-ggaggagtgagtgg 156 ||| ||||||| || | | ||| || | | ||||||| |||||| Sbjct 132 ACATGGTGGTGGTGGAGGTTCTGGAGGAGTGAGTAGTGGAGGTTATGGAGGAGAGAGTGG 191 Query 157 tggtgcttatggtggtggtagtggagaaggagctggtggtggatatggaggtgctaaagg 216 ||||| |||||| || ||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 192 TGGTGGTTATGGGGGCGGTAGTGGAGAAGGAGCTGGTGGAGGATATGGAGGTGCTGAAGG 251 Query 217 gtatgctagtggtggtggtggtgggcatggtggaggcggtggtggAGCTGCTTCTTCCGG 276 ||||||||||||||| ||| |||| || |||||||| ||||||||||||||||| ||||| Sbjct 252 GTATGCTAGTGGTGGCGGTAGTGGTCACGGTGGAGGTGGTGGTGGAGCTGCTTCCTCCGG 311 Query 277 TGGTTATGCTAgtggaggaggagaaggaggaggtggtggttatggtggagcggctggtgg 336 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 312 TGGTTATGCTAGTGGAGCAGGAGAAGGAGGAGGTGGTGGTTATGGTGGAGCTGCTGGTGG 371 Query 337 tcatgctggtggtggaggtggtggtagcggaggcggtggaggaTCAGCTTACGGTGCTGG 396 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 372 TCATGCTGGTGGTGGAGGTGGTGGTAGTGGAGGCGGTGGAGGATCAGCTTACGGTGCTGG 431 Query 397 AGGAGAGCATGCTAGTGGCTATGGAAACGGAGCTGGTGAAGGTGGTGGCGCCGGTGGAAG 456 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 432 AGGAGAGCATGCTAGTGGTTATGGAAACGGAGCTGGTGAAGGTGGTGGCGCCGGTGCAAG 491 Query 457 Tgagtatggaggtggagcttatggaggcggcggtggccatggaggaggaggaggtggagg 516 || ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 492 TGGGTATGGAGGGGGAGCTTATGGAGGCGGCGGTGGTCATGGAGGAGGAGGTGGTGGAGG 551 Query 517 atctgcaggaggGGCTCA---TGGTGGTGCTTACGGAGGCGGTGAAGGAGGAGGAGCtgg 573 ||| |||||||||||||| ||| ||| ||| |||||||||||||||||||||||||| Sbjct 552 ATCAGCAGGAGGGGCTCACGGCGGTAGTGGTTATGGAGGCGGTGAAGGAGGAGGAGCTGG 611 Query 574 tggtggagggtctcatgggggtgctggaggctatggaggtggtggcggtggaggaagtgg 633 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 612 TGGTGGAGGGTCTCATGGTGGTGCCGGAGGCTATGGAGGTGGTGGCGGTGGAGGAAGTGG 671 Query 634 aggaggaggagcttacggcggaggaggagcacatggaggtGGTTATGGAAGTGGTGCtgg 693 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 672 AGGAGGAGGAGCTTACGGCGGAGGAGGAGCACATGGAGGTGGCTATGGAAGTGGTGGTGG 731 Query 694 tgaaggaggtggttatggaggaggtgctgcaggaggatatggtggtggcggtggaggagg 753 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 732 TGAAGGAGGTGGCTATGGAGGAGGTGCAGCAGGAGGATATGGTGGTGGCGGTGGAGGAGG 791 Query 754 agaaggaggaggcggtggttacggtggtgaacatggaggtggttcaggcggaggtcacgg 813 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 792 AGAAGGAGGAGGCGGTAGTTACGGTGGTGAACATGGAGGTGGTTCAGGCGGAGGTCACGG 851 Query 814 tggtggtggcggtCACGGCGGCGGTGGAGGCTATGCCCCATGAAGAAACCAACTTAAGAT 873 ||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 852 TGGTGGTGGTGGTCACGGCGG---TGGAGGCTATGCCCCATGAGGAAACCAACTTAAGAT 908 Query 874 CAGCCAAAAGAAACGCTGAAAAATAAAAGATAATCTGTGGAGGGGTATACAAATTTAAAT 933 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 909 CAGCCAAAAGAAAGGCTGAAAAATAAAAGATAATCTGTGGAGGGGTATACAAATTAAAAT 968 Query 934 GCCTA-T-TT-CATAACATTTTGTATCCATTATTATTGAACGTTGTGTTGTATTTTCATA 990 ||||| | || || |||||||||||||||||||||||||||||||| |||||||||| || Sbjct 969 GCCTACTATTTCAAAACATTTTGTATCCATTATTATTGAACGTTGTATTGTATTTTCCTA 1028 Query 991 ATAATTGAATATTTTATTGTCTTATCATT 1019 ||||||||||||||||||||||||||||| Sbjct 1029 ATAATTGAATATTTTATTGTCTTATCATT 1057 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49932742118 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5