BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494314

Length=868
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46620.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...  1066    0.0  


> AT5G46620.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G17960.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:18917613-18919420 REVERSE LENGTH=979
Length=979

 Score = 1066 bits (577),  Expect = 0.0
 Identities = 659/698 (94%), Gaps = 8/698 (1%)
 Strand=Plus/Plus

Query  176  aaaaGCTGTTAAATTTGAGGGCTTTAGATCGAATTTGATATCTGGGGTTAATGGGTTTTT  235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  AAAAGCTGTTAAATTTGAGGGCTTTAGATCGAATTTGATATCTGGGGTTAATGGGTTTTT  302

Query  236  TGAAGAAGTTAACGGGTATACTTGGGTTTGGGCATAACGATGGTGGTGGTGGTCATGGAG  295
            ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  303  TGAAGAAGTTAACGGGTATACTTGGTTTTGGTCATAACGATGGTGGTGGTGGTCATGGAG  362

Query  296  CTGTAAAAGATGAAGATGGTGATGGTGGAGATAACA-C--TGGAGCAGTTTCTGGTGATG  352
            |||| | ||||||||||||||||||||||||||||| |  |||| | |||||||||||||
Sbjct  363  CTGTGAGAGATGAAGATGGTGATGGTGGAGATAACAACACTGGAACTGTTTCTGGTGATG  422

Query  353  GAGATAAACGTCGGGAGGATAATCAGACGAGGTTCCGTGAAACTGGACTTCCAAGGAAAG  412
            |||||||||||||||| || ||||||||||| || |||||||||||||  | ||||||||
Sbjct  423  GAGATAAACGTCGGGAAGAGAATCAGACGAGATTTCGTGAAACTGGAC--C-AAGGAAAG  479

Query  413  GTTTTGGTGTACCGGTTCAAGTTGCTGTTGAACGGTCTAATCCTGGTCCTATTCTTCAGC  472
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  480  GTTTTGGTGTACCGGTTCAAGTTGCTGTTGAACGGTCGAATCCTGGTCCTATTCTTCAGC  539

Query  473  CTTGTGCTGCTTCAGATGGTGGTATTCAGGGACTACGTTGGTACTCAATGCGGCTTAAGA  532
            |||||||||||| ||| |||||| |||||||||||||||||||||| |||||||||||||
Sbjct  540  CTTGTGCTGCTTTAGACGGTGGTGTTCAGGGACTACGTTGGTACTCGATGCGGCTTAAGA  599

Query  533  TTGATGAAGACGGAGATGTTGCAGATGAGTTCTTGGAAGATCATAACTGTAAGACTTTAC  592
            |||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||
Sbjct  600  TTGATGAAGACGGAGATGTTGCAGATGAGTTCTTAGAAGACCAAAACTGCAAGACTTTAC  659

Query  593  CAAGAAAGTGCAAAACAAAAGCTGCAAAAGTGAGAGGTTTAGTGATATCTTCTGATGGGA  652
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  660  CAAGAAAGTGCAAAACAAAAGCTGCAAAAGTGAGAGGTTTAGTGATATCTTCTGATGGGA  719

Query  653  AACTTCAGCCACTAATGCATTGAACAATGAGCACCAAAGAGAAAGATTTGCTGATTAGTG  712
            ||||||||||| ||||||||||||||||||  ||||| |||||||||||||||| |||||
Sbjct  720  AACTTCAGCCATTAATGCATTGAACAATGAAAACCAAGGAGAAAGATTTGCTGAATAGTG  779

Query  713  TG--ATTGAATCAGAGAAAGGTTAGAACTTATGTTTCATTAATTTCGAGATCAATCCATT  770
            ||  |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct  780  TGTGATTGAATCAGAGAAAGGTTAGAACTTGTGTTTCATTAATTTCGATATCAATCCATT  839

Query  771  TGATTCTTGAGCACTTAAAATGTTATTTAACTGTGAATTTAGTTTTTGAAAATAGACAGT  830
             |||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct  840  AGATTCTTGAGAACTTATAATGTTATTTAACTGTGAATTTAGTTTCTGAAAATAGACAGT  899

Query  831  GATTCTCTTTGGGATTATCTAAAAACATTTGTGCAATT  868
            ||||||||||||||||||||||| ||||||||||||||
Sbjct  900  GATTCTCTTTGGGATTATCTAAACACATTTGTGCAATT  937


 Score =  200 bits (108),  Expect = 2e-50
 Identities = 134/145 (92%), Gaps = 7/145 (5%)
 Strand=Plus/Plus

Query  37   aaGAAGATTAACACAGTGTTCACGAG-G-GATAGATTAAGGACAGAGATTTTCTGGGTTT  94
            |||||||||||||||||||||||||| | || ||||||| ||||||||||| ||||||||
Sbjct  69   AAGAAGATTAACACAGTGTTCACGAGAGAGAGAGATTAAAGACAGAGATTT-CTGGGTTT  127

Query  95   TAACAATAGGGAAATGAATATTGTTGGATTAAGAAGCGATCGGAGAAAGTAG-AAA--TC  151
            ||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||  ||
Sbjct  128  TAACAGTAGG-AAATGAATATTGTTGGATTAAGAAGCGATCGGAGAAAGTAGCAAAAATC  186

Query  152  GAGAGAGGAAAGGGATATTCGaaaa  176
            | |||||||||||||||||||||||
Sbjct  187  GGGAGAGGAAAGGGATATTCGAAAA  211


 Score = 71.3 bits (38),  Expect = 1e-11
 Identities = 38/38 (100%), Gaps = 0/38 (0%)
 Strand=Plus/Plus

Query  1   GAAGATCTTGCTCGATCCGTCTTTGATCCaaaaaaaaa  38
           ||||||||||||||||||||||||||||||||||||||
Sbjct  1   GAAGATCTTGCTCGATCCGTCTTTGATCCAAAAAAAAA  38



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42347385921


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5