BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494314 Length=868 Score E Sequences producing significant alignments: (Bits) Value AT5G46620.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1066 0.0 > AT5G46620.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:18917613-18919420 REVERSE LENGTH=979 Length=979 Score = 1066 bits (577), Expect = 0.0 Identities = 659/698 (94%), Gaps = 8/698 (1%) Strand=Plus/Plus Query 176 aaaaGCTGTTAAATTTGAGGGCTTTAGATCGAATTTGATATCTGGGGTTAATGGGTTTTT 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 AAAAGCTGTTAAATTTGAGGGCTTTAGATCGAATTTGATATCTGGGGTTAATGGGTTTTT 302 Query 236 TGAAGAAGTTAACGGGTATACTTGGGTTTGGGCATAACGATGGTGGTGGTGGTCATGGAG 295 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 303 TGAAGAAGTTAACGGGTATACTTGGTTTTGGTCATAACGATGGTGGTGGTGGTCATGGAG 362 Query 296 CTGTAAAAGATGAAGATGGTGATGGTGGAGATAACA-C--TGGAGCAGTTTCTGGTGATG 352 |||| | ||||||||||||||||||||||||||||| | |||| | ||||||||||||| Sbjct 363 CTGTGAGAGATGAAGATGGTGATGGTGGAGATAACAACACTGGAACTGTTTCTGGTGATG 422 Query 353 GAGATAAACGTCGGGAGGATAATCAGACGAGGTTCCGTGAAACTGGACTTCCAAGGAAAG 412 |||||||||||||||| || ||||||||||| || ||||||||||||| | |||||||| Sbjct 423 GAGATAAACGTCGGGAAGAGAATCAGACGAGATTTCGTGAAACTGGAC--C-AAGGAAAG 479 Query 413 GTTTTGGTGTACCGGTTCAAGTTGCTGTTGAACGGTCTAATCCTGGTCCTATTCTTCAGC 472 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 480 GTTTTGGTGTACCGGTTCAAGTTGCTGTTGAACGGTCGAATCCTGGTCCTATTCTTCAGC 539 Query 473 CTTGTGCTGCTTCAGATGGTGGTATTCAGGGACTACGTTGGTACTCAATGCGGCTTAAGA 532 |||||||||||| ||| |||||| |||||||||||||||||||||| ||||||||||||| Sbjct 540 CTTGTGCTGCTTTAGACGGTGGTGTTCAGGGACTACGTTGGTACTCGATGCGGCTTAAGA 599 Query 533 TTGATGAAGACGGAGATGTTGCAGATGAGTTCTTGGAAGATCATAACTGTAAGACTTTAC 592 |||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||| Sbjct 600 TTGATGAAGACGGAGATGTTGCAGATGAGTTCTTAGAAGACCAAAACTGCAAGACTTTAC 659 Query 593 CAAGAAAGTGCAAAACAAAAGCTGCAAAAGTGAGAGGTTTAGTGATATCTTCTGATGGGA 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 CAAGAAAGTGCAAAACAAAAGCTGCAAAAGTGAGAGGTTTAGTGATATCTTCTGATGGGA 719 Query 653 AACTTCAGCCACTAATGCATTGAACAATGAGCACCAAAGAGAAAGATTTGCTGATTAGTG 712 ||||||||||| |||||||||||||||||| ||||| |||||||||||||||| ||||| Sbjct 720 AACTTCAGCCATTAATGCATTGAACAATGAAAACCAAGGAGAAAGATTTGCTGAATAGTG 779 Query 713 TG--ATTGAATCAGAGAAAGGTTAGAACTTATGTTTCATTAATTTCGAGATCAATCCATT 770 || |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 780 TGTGATTGAATCAGAGAAAGGTTAGAACTTGTGTTTCATTAATTTCGATATCAATCCATT 839 Query 771 TGATTCTTGAGCACTTAAAATGTTATTTAACTGTGAATTTAGTTTTTGAAAATAGACAGT 830 |||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 840 AGATTCTTGAGAACTTATAATGTTATTTAACTGTGAATTTAGTTTCTGAAAATAGACAGT 899 Query 831 GATTCTCTTTGGGATTATCTAAAAACATTTGTGCAATT 868 ||||||||||||||||||||||| |||||||||||||| Sbjct 900 GATTCTCTTTGGGATTATCTAAACACATTTGTGCAATT 937 Score = 200 bits (108), Expect = 2e-50 Identities = 134/145 (92%), Gaps = 7/145 (5%) Strand=Plus/Plus Query 37 aaGAAGATTAACACAGTGTTCACGAG-G-GATAGATTAAGGACAGAGATTTTCTGGGTTT 94 |||||||||||||||||||||||||| | || ||||||| ||||||||||| |||||||| Sbjct 69 AAGAAGATTAACACAGTGTTCACGAGAGAGAGAGATTAAAGACAGAGATTT-CTGGGTTT 127 Query 95 TAACAATAGGGAAATGAATATTGTTGGATTAAGAAGCGATCGGAGAAAGTAG-AAA--TC 151 ||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 128 TAACAGTAGG-AAATGAATATTGTTGGATTAAGAAGCGATCGGAGAAAGTAGCAAAAATC 186 Query 152 GAGAGAGGAAAGGGATATTCGaaaa 176 | ||||||||||||||||||||||| Sbjct 187 GGGAGAGGAAAGGGATATTCGAAAA 211 Score = 71.3 bits (38), Expect = 1e-11 Identities = 38/38 (100%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 1 GAAGATCTTGCTCGATCCGTCTTTGATCCaaaaaaaaa 38 |||||||||||||||||||||||||||||||||||||| Sbjct 1 GAAGATCTTGCTCGATCCGTCTTTGATCCAAAAAAAAA 38 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42347385921 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5