BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494321
Length=1984
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46570.1 | Symbols: BSK2 | BR-signaling kinase 2 | chr5:1889... 3217 0.0
> AT5G46570.1 | Symbols: BSK2 | BR-signaling kinase 2 | chr5:18894402-18897406
FORWARD LENGTH=1963
Length=1963
Score = 3217 bits (1742), Expect = 0.0
Identities = 1909/1986 (96%), Gaps = 25/1986 (1%)
Strand=Plus/Plus
Query 1 ACCTCTATTTTTTCAACTCTGCAGCTTTTTGAAGCTATATTTTTCAGATCTTtctctctc 60
|||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 1 ACCTCTATTTTTTCAAGTCTGCAGCTTTTTGAAGCTATATTTTTCAGA------TCT-T- 52
Query 61 tctctctctctctAGCTACTTCTTTTTGTCTTCAAGTTTTCAAATTTTATTAAATTTTTA 120
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 53 TCACTCTCTCTCTAGCTACTTCTTTTTGTCTTTAAGTTTTCAAATTTTATTAAATTTTTA 112
Query 121 TAATTCTACTGCCTCCTCAGCTTCTCTCACAAAGCACAAATCCAAACCCCGAATCAAATC 180
| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 113 T-ATTCTACTGCCTCCTCAGCTTCTCTCACAAAGCACAAATCCAAGCCCCAAATCAAATC 171
Query 181 CCACCATTGTTTTTATTACCTCAATCCAAGAACACAAAACAC-ACAAAAAATCTCTGTTT 239
||||||||| ||||||||||||||||||||||||| | |||| || ||||||||||||||
Sbjct 172 CCACCATTG-TTTTATTACCTCAATCCAAGAACACTAGACACAAC-AAAAATCTCTGTTT 229
Query 240 CTTATCCAAATTTCTGATCTTTGTTGAGAACAAATTGTTCAtttttttttATT-GATGTG 298
|||||||||||||||||||||||| |||||| || | | |||| ||| ||||||
Sbjct 230 CTTATCCAAATTTCTGATCTTTGTGGAGAAC-AA----T-A----TTTTGATTGGATGTG 279
Query 299 AGACAAATGGGTTGTTTACATTCCAAAACTGCTAATCTACCTTCTTCTGATGATCCATCA 358
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 280 AGACAAATGGGTTGTTTACATTCCAAAACTGCTAATCTTCCTTCTTCTGATGATCCATCA 339
Query 359 GCTCCAAACAAACCAGAATCAGTAAATGGGGACCAAGTGGATCAAGAAATCCAAAATTTC 418
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 340 GCTCCAAACAAACCAGAATCAGTAAATGGGGACCAAGTGGATCAGGAAATCCAAAATTTC 399
Query 419 AAAGAATTTGAACTAAATGAGTTGAGGAAAGCAACAAATGGGTTTAGCCCTAGCTGCATT 478
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 400 AAAGAATTTGAACTAAATGAGTTGAGGAAAGCTACCAATGGGTTTAGTCCTAGCTGCATT 459
Query 479 GTCTCTGAAGGTGGAGAGAAAGCTCCTAATGTGGTTTACAGAGGGAAGCTTGAAGGGAAT 538
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 460 GTCTCTGAAGGTGGAGAGAAAGCTCCTAATGTCGTTTACAGAGGGAAGCTTGAAGGGAAT 519
Query 539 CATCTTGTAGCTATCAAGCGATTCTCTAGGCAATCTTGGCCTGATGCTCAACAGTTTGTG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 CATCTTGTAGCTATCAAGCGATTCTCTAGGCAATCTTGGCCTGATGCTCAACAGTTTGTG 579
Query 599 GTCGAAGCAACTGGTGTTGGGAAGCTTAGAAACAAGAGAATAGTCAGTTTGATTGGTTGC 658
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 580 GTGGAAGCGACTGGTGTTGGGAAGCTTAGAAACAAGAGAATAGTTAGTTTGATCGGTTGC 639
Query 659 TGCGCTGAGGGAGATGAGAGATTGTTGGTAGCAGAGTATATGCCCAATGATACTCTCTCA 718
|| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 640 TGTGCTGAAGGAGATGAGAGGTTGTTGGTGGCAGAGTATATGCCCAATGATACTCTCTCA 699
Query 719 AAGCATCTCTTTCACTGGGAAAAGCAGCCACTTCCATGGGATATGCGTGTTCGAATCGCA 778
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 AAGCATCTCTTCCACTGGGAAAAGCAGCCACTTCCATGGGATATGCGTGTTCGAATCGCA 759
Query 779 GACTTTATTGCACAAGCACTTGATTACTGCAATATCGAGAACCGAAAAATCTATCATGAC 838
|||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 760 GACTATATTGCAGAAGCACTTGATTACTGCAATATTGAGAACCGAAAAATCTATCATGAC 819
Query 839 CTCAATGCATACAGAATCCTCTTCGACGAGGAAGGTGATCCTCGTCTATCTACTTTTGGT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 CTCAATGCATACAGAATCCTCTTCGACGAGGAAGGTGATCCTCGTCTATCTACTTTTGGT 879
Query 899 CTTATGAAGAACAGTAGAGATGGAAAAAGCTACAGTACCAACTTAGCTTATACTCCACCT 958
||||||||||||||||||||||| |||||||| || || |||||||||||||||||||||
Sbjct 880 CTTATGAAGAACAGTAGAGATGGCAAAAGCTATAGCACAAACTTAGCTTATACTCCACCT 939
Query 959 GAGTTTTTACGGACAGGTAGAGTCATTCCTGAAAGTGTGATCTTCAGTTATGGAACCATT 1018
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 940 GAGTTTTTACGGACAGGTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATT 999
Query 1019 CTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCATGCTCTTGATATCATAAGA 1078
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1000 CTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCATGCCCTTGATATCATAAGA 1059
Query 1079 GGGAAAAATGCATTGCTTCTTATGGATTCATCTCTTGAAGGGCAATATGCGAATGAAGAT 1138
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1060 GGGAAAAATGCTTTGCTTCTTATGGATTCATCTCTTGAAGGGCAATATGCGAATGATGAT 1119
Query 1139 GCGACTAAATTAGTTGAGCTTGCTTCAAAATGCCTTCAATCAGAGGCAAAGGATCGACCA 1198
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 GCGACTAAATTAGTTGATCTTGCTTCAAAATGCCTTCAATCAGAGGCAAAGGATCGACCA 1179
Query 1199 GATACCAAATTTCTTCTCTCTGCAGTAGCACCACTACAAAAGCAAGAAGAGGTTGCTTCT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 GATACCAAATTTCTTCTCTCTGCAGTAGCACCACTACAAAAGCAAGAAGAGGTTGCTTCT 1239
Query 1259 CATGTCTTAATGGGCTTACCAAAGAACACAGTAATATTACCAACTATGCTTTCTCCTCTT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 CATGTCTTAATGGGCTTACCAAAGAACACAGTAATATTACCAACTATGCTTTCTCCTCTT 1299
Query 1319 GGAAAGGCCTGTGCAAAGATGGACCTTGCCACATTTCACGACATTTTGCTTAAAACCGGT 1378
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1300 GGAAAGGCCTGTGCAAAGATGGACCTTGCGACATTTCACGACATTTTGCTTAAAACCGGT 1359
Query 1379 TACAGAGACGAGGAAGGTGCAGAAAATGAGCTTTCATTTCAAGAATGGACACAACAAGTG 1438
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 TACAGAGATGAAGAAGGTGCAGAAAATGAGCTTTCATTTCAAGAATGGACACAACAAGTG 1419
Query 1439 CAGGAGATGCTCAACACAAAAAAGTTCGGGGACATTGCTTTCCGAGACAAGGATTTCAAG 1498
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1420 CAGGAGATGCTTAACACAAAAAAGTTCGGGGACATTGCTTTCAGAGACAAGGATTTCAAG 1479
Query 1499 AACTCAATTGAATACTACTCAAAGTTGGTGGGGATGATGCCGGTTCCTTCTGCAACAGTT 1558
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1480 AACTCAATTGAATACTACTCCAAGTTGGTGGGGATGATGCCGGTTCCTTCTGCAACAGTT 1539
Query 1559 TTCGCTAGACGGGCTTTCTCCTACTTAATGACAGACCAACAGGAGCTTGCACTGAGAGAT 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 TTCGCTAGACGGGCTTTCTCCTACTTAATGACAGACCAACAGGAGCTTGCACTGAGAGAT 1599
Query 1619 GCAATGCAGGCACAGGTGTGCATACCCGAATGGCCAACAGCTTTTTACTTGCAGGCTTTA 1678
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1600 GCAATGCAGGCACAGGTGTGCATACCAGAATGGCCAACAGCTTTTTACTTGCAGGCTTTA 1659
Query 1679 GCGCTCTCAAAGCTCGGAATGGAGACGGATGCTCAAGATATGCTCAATGATGGCGCAGCA 1738
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 1660 GCGCTCTCAAAGCTCGGAATGGAGACTGATGCTCAAGATATGCTCAACGATGGCGCTGCA 1719
Query 1739 TATGATGCTAAGCGACAGAATAGCTGGCGCTGCTAAGCTATAAAAAGGAAGTCCCAAATA 1798
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 1720 TATGATGCTAAGCGACAGAATAGCTGGCGCTGCTAAGCTATTAGA-GGAAGTCCCAAATA 1778
Query 1799 TTTATGGGTCTTTTCAGACTGTAACTGAAAATTGTGTATGCATGTAAGAGAGAGATTGAA 1858
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1779 TTTATGGGTCTTTTCAGACTGTAACTGAAAGGTGTGTATGCATGTAAGAGAGAGATGGAA 1838
Query 1859 TGTGTTGTTTACTTTTGTGAAATGAGAGCTTCtttttttGCATGAATCTTTATGAAAAGT 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 TGTGTTGTTTACTTTTGTGAAATGAGAGCTTCTTTTTTTGCATGAATCTTTATGAAAAGT 1898
Query 1919 CAAATCTTTTGGGGGAAAGAGAGAATAAGACTGCAAATAACTAATTTGATTCCTTCTTCC 1978
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 CAAATCTTTTGGGG-AAAGAGAGAATAAGACTGCAAATAACTAATTTGATTCCTTCTTCC 1957
Query 1979 TTATGG 1984
||||||
Sbjct 1958 TTATGG 1963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98292667110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5