BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494329 Length=2022 Score E Sequences producing significant alignments: (Bits) Value AT5G46420.1 | Symbols: | 16S rRNA processing protein RimM fami... 3116 0.0 > AT5G46420.1 | Symbols: | 16S rRNA processing protein RimM family | chr5:18829955-18832953 FORWARD LENGTH=2066 Length=2066 Score = 3116 bits (1687), Expect = 0.0 Identities = 1919/2030 (95%), Gaps = 19/2030 (1%) Strand=Plus/Plus Query 1 AAGAGATAATGCTGAGAGCTTCGCTTCTCTGTTCTTCGGCCTCAATCACTTTCACACCAA 60 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 37 AAGAGATAATGCTGAGAGCTTCGCTGCTCTGTTCTTCGACCTCAATCACTTTCACACCAA 96 Query 61 TTCAACTATTCAATCCCAATA-TCTCCCCTCATTTCCAAAGCTTCGAAGTATCTCGTCCC 119 ||||||||||||||||||||| | |||| || ||||| ||| |||||| |||||||||| Sbjct 97 TTCAACTATTCAATCCCAATAGT-TCCCATCGTTTCCCAAGATTCGAACTATCTCGTCCT 155 Query 120 GTCTCGGCTTTGTCTCGTACCAAAAATTGTCACTTCAGTCTCGTGAGAGCTCGTGGGAAA 179 ||||||||||||||||||||| ||| |||||||| |||||| ||||||||||||||||| Sbjct 156 GTCTCGGCTTTGTCTCGTACC--AAA-TGTCACTTGAGTCTCCTGAGAGCTCGTGGGAAA 212 Query 180 TCCAGCTTCTTCGTTCGTAGCACCGCTACTCAAGAAGCTGTTGAAACCAGTAGTAACAGT 239 ||||||||| || ||| |||||||||||| | |||||||||||||| |||||||||||| Sbjct 213 TCCAGCTTCCTCACTCGCAGCACCGCTACTGATGAAGCTGTTGAAACTAGTAGTAACAGT 272 Query 240 GAATTGGATTTAGTTGAAGTTGGATTCTTGTCTGGTGTTCATGG-CTTACAAGGCGAGAT 298 | ||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||||||| Sbjct 273 GGATTGGATTTGGTTGAGGTTGGATTCTTGTCTGGTGTTCATGGCCTT-CAAGGCGAGAT 331 Query 299 TTGCATAAAACCAAACACTGATTTTCCTGATTTACGTTTCTCCAAGCCTGGTAGAAGATG 358 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 332 TTGCATAAAACCAAACACTGATTTTCCTGATTTACGTTTCTCTAAGCCTGGTAGAAGATG 391 Query 359 GTTAAAACAACAATTGATGGGACAAGATAAGATTGATGAGGTTGAATTAGTTGAAGGAAG 418 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 392 GTTAAAACAACAATTGTTGGGACAAGATAAGATTGATGAGGTTGAATTAGTCGAAGGAAG 451 Query 419 ACCTCATCCTGCGCAGAAGAGTTGGATTCTTAAGTTTCGAGGGTTGGATGATGTTGATCA 478 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 452 ACCTCATCCTGCGCAGAAGAGTTGGATTCTTAAGTTTCGAGGGTTGGACGATGTTGATCA 511 Query 479 GGTGAGACAACTCGTTGGTGCAACTCTGCTTGCTGAGGACGATGATCGTCCTGAGCTTGA 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 512 GGTGAGACAACTCGTTGGTGCAACTCTGCTTGCTGAGGACGATGATCGTCCTGAGCTTGA 571 Query 539 TG-ATGATGAATTTTACTCTCGTGATCTTGTAGGCATGAAAGTTCTTCTCAAGGAGACGG 597 || | || |||||||||||||| |||||||||||||||| |||||||||||||||||| | Sbjct 572 TGAAGGA-GAATTTTACTCTCGAGATCTTGTAGGCATGAGAGTTCTTCTCAAGGAGACCG 630 Query 598 GTCAACTTGTTGGAACTGTTGCTAATATTTTCGACAATGGAGGAAATGATCTTCTACACG 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 631 GTCAACTTGTTGGAACTGTTGCTAATATTTTCGACAATGGAGGAAATGATCTTCTACATG 690 Query 658 TTTTGCTTGACTCATCCATGGAAGTCTGCAACGGGAGTGCAAAGACCAATCAGCTTGTGT 717 ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | Sbjct 691 TTTTGCTTGACTCATCCATGGAAGTCTGCAATGGGAATGCAAAGACCAATCAGCTTGTTT 750 Query 718 GGATACCTTTTGTAGACGCAATTGTTCCTGATGTTGATTTAGAAAGAAAAGAGATGTATA 777 |||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| Sbjct 751 GGATACCTTTTGTAGATGCAATTGTTCCTGATGTTGATTTGGAAAGAAAGGAGATGTATA 810 Query 778 TAACTCCCCCGAAGGGACTCCTCGAGGTGAATATGCGAGCAGATGATCGGTCCAAGAAAG 837 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 811 TAACTCCACCGAAGGGACTCCTCGAGGTGAATATGCGAGCAGATGATCGGTCCAAGAAAG 870 Query 838 AAAGGCGGCAGCTTGAATGGAAAGAAAGAAAAAAGCAGCAGAAGCGTCTTATTGCTGCTA 897 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 871 AAAGGCGGCAGCTTGAATGGAAAGAAAGAAAAAAACAGCAGAAGCGCCTTATTGCTGCTA 930 Query 898 AAAAGAAGTTATGTGAATTGGAGCAAAAGCATGTGTTTGATGGATTAAGGTTTGGAGAAA 957 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 931 AAAAGAAGTTATGTGAAATGGAGCAAAAGCATGTGTTTGATGGATTAAGGTTTGGAGAAA 990 Query 958 AGTCTCAAAGGAATTTACTTGCTGATCATATCCTTGATGTAAACTCCACACTGCTTCAGA 1017 ||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| Sbjct 991 AGTCTCAAAGGAATTTACTTGCTGATCATATCCTTAACGTAAACTCCACACTACTTCAGA 1050 Query 1018 AAGCGTTGCAAAGTATTGACACCTCATCGAAGAGATGGAATGTAATTGAGGAAATCAATG 1077 |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1051 AAGCTTTGCAAAGTATTGACACCTCATCGAAGAGATGGAATGTAACTGAGGAAATCAATG 1110 Query 1078 -AGCTGAGAGCTAGAGTATCGGAATGTACTCTGAATGTGTCACGAGAATGCCTTAGTTTT 1136 | ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1111 CA-CTGAGAGCTAGAGTATCGGAATGTAATCTGAGTGTGTCACGAGAATGCCTTAGTTTT 1169 Query 1137 GATGCAAGCAAAGAGAAAATGGGTGATAACTTCAGTTTCCTTCAACAAGGGCAAAGTCTA 1196 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 1170 GATGCAAGCAAAGAGAACATGGGTGATAACTTCAGTTTCCTTCAACAAGGGCAAAATCTG 1229 Query 1197 TTCTCTGAGGGTAAAGTTTCTATTTGTTTGGTTCTCAATGATCACGAGAACGAACAACCA 1256 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 1230 TTCTCTGAGGGTAAAGTTTCTATTTGTTTGGTTCTCAATGATCACGAGAATGAAGAACCA 1289 Query 1257 GAAGGTGAGAATGGTGTAGTCTCGTACCTTCATACACTACTTGATGAGGAGCAGAGTTTC 1316 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 1290 GAAGGTGAGAATGGTGTAGTCTCGTACCTTCACGCACTACTTGATGAGGAGCAGAGGTTC 1349 Query 1317 ATAAAGGAAGAAGATCGCGCTTGCGTGCCACTTGTCATAGTTTCCCCTGAACATACCGTT 1376 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1350 ATAAAGGAAGAAGATCGCGCTTGCGTGCCACTTGTCATAGTTTCCCCTGAACATACCATT 1409 Query 1377 GAAGCTCTGCAGAAGCTATTTCAGGATAATGATCATTTTGGATTTGAAG-CAGAAAAGAT 1435 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 1410 GAAGCTCTGCAGAAGCTATTTCAGGATAATGATCATTTTGGATTTGA-GTCAGAAAAGAT 1468 Query 1436 CTGGATTCTCAAAGAAGAAACGCTTCCAGTAGTATGTAGCTCACCAGAGGAACCGAAAAA 1495 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1469 CTGGATTCTCAAAGAAGAAACGCTTCCAGTAGTTTGCAGCTCACCAGAGGAACCGAAAAA 1528 Query 1496 GCACAAGATTTTGATGAAATCTCCATGGGAGATACTTAAGTCCCCGGTTGGCTCTGGAGG 1555 |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1529 GCACAAAATTTTGATGAAATCTCCATGGGAGATACTTGAGTCCCCGGTTGGCTCTGGAGG 1588 Query 1556 AGTCTTGAGCATCCTTGCTTCACATGGAATTACAGACTCTCTTTCCAGTCTGGGAATCGA 1615 ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | Sbjct 1589 AGTCTTGAGCATCCTTGCTTCACATGGAACTACAGACTCTCTTTCCACCCTGGGAATCAA 1648 Query 1616 TTATCTTCAGGTACACAGCATTGAAACAAAACCACAACCTTCGCAACATTACATCAATCC 1675 |||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| Sbjct 1649 TTATCTTCAGGTACACAGTATTGAAACAAAACCACAACCGTCACAACATTACATCAATCC 1708 Query 1676 GATGCTCGTTGGATTT-GCT-AGTGCAAAAGGTGCTGAGATTGGGATCCAGGTGACCAAA 1733 ||||| ||||| ||| | | || |||| ||| || |||||||||||||| |||||| || Sbjct 1709 CATGCTTGTTGG-TTTCG-TGAGCGCAAGAGGAGCAGAGATTGGGATCCAAGTGACCGAA 1766 Query 1734 GAATCTGTATTCAAGAACTTGGAAATGGCATTCTCAATGAAGTTTTTGAAGAGATTAAAG 1793 ||||||| | ||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1767 GAATCTGAACTCAAGAACTTGGAAATGACATTCTCAATGAAGTTTCTGAAGAGATTAAAG 1826 Query 1794 GGCAAAATCGAGTTTGAAGCTGTTATGAAGATGCACTCACATGTTCAGAAGGTTGAAAAG 1853 || |||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| Sbjct 1827 GGAAAAATCGAGTTTGAAGCTGTCATGAAGATGAATTCACATGTTCAGAATGTTGAAAAG 1886 Query 1854 GAGTGGGTTGAGTCCGTACCATCAGAACCGAACTCGTTTGAGTTTCATTCTGATATATGC 1913 |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| | | Sbjct 1887 GAGTGGGTTGAGTCAGTACCATCAGAACCAAACTCGTTTGAGTTTCGTTCTGATATTTAC 1946 Query 1914 AGAGTCTTGAGTGAATGTTCTTCATCAGCTAAGATTTGTTTGATGAACATCACAGTTTAG 1973 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 1947 AGAGTCTTGAGTGAATGTTCTTCATCAGCTAAGATTTGTTTGATGAACATTACCGTTTAG 2006 Query 1974 AACATGTATATTTTGCTACTTAGTT-TTTCGTCCTCACATCTAAAAAGCT 2022 ||| |||| |||||||||||||||| ||| |||||||||||||||||||| Sbjct 2007 AACTTGTACATTTTGCTACTTAGTTGTTT-GTCCTCACATCTAAAAAGCT 2055 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100200287820 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5