BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494357
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46170.1 | Symbols: | F-box family protein | chr5:18714965-... 2435 0.0
AT4G18380.1 | Symbols: | F-box family protein | chr4:10157887-... 715 0.0
> AT5G46170.1 | Symbols: | F-box family protein | chr5:18714965-18716953
REVERSE LENGTH=1691
Length=1691
Score = 2435 bits (1318), Expect = 0.0
Identities = 1569/1683 (93%), Gaps = 46/1683 (3%)
Strand=Plus/Plus
Query 1 TCTTCTCTCTAGAAACATC-TTCATGCGTTATCTTCTCCAAAAGCTCTGATTCTGATTCT 59
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 13 TCTTCTCTCTAGAAACATCTTTCATGCGTTATCTTCTCCAAAAGCTCTGATTCTGATTCT 72
Query 60 GAATCAT-CT-aaaaaaaCC----------CTA---GA-AAAA---TCAAAGATCCATGG 100
||||||| || ||||||||| ||| | |||| ||||||||||||||
Sbjct 73 GAATCATCCTGAAAAAAACCTAGAAAAATTCTATCCCACAAAATCTTCAAAGATCCATGG 132
Query 101 CCGTAATTATCCCTCGTTCAGATCCACCGTCACGAATCCATTCC-GAACCACCACAAACC 159
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 133 CCGTAATTATCCCTCGTTCAGATCCACCGTCACGAATCCA-TCCGGAACCACCACAAACC 191
Query 160 CTAGAAATCGACCATTTCGATCGTCTGCCTGACTCAATCCTCCTCCTCGTTTTCAACAAA 219
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 192 CTAGAAATCGACCATTTCGATCATCTTCCTGACTCAATCCTCCTCCTCGTTTTCAACAAA 251
Query 220 ATCGGTGACGTTAAAGCTCTCGGAAGATGCTGTGTCGTTTCCCGGAGATTTCATTCTCTC 279
||||| ||||| |||||||||||||||||||| ||||||||| | ||||| |||||||||
Sbjct 252 ATCGGCGACGTCAAAGCTCTCGGAAGATGCTGCGTCGTTTCCAGAAGATTCCATTCTCTC 311
Query 280 GTTCCTCAAGTCGATAACGTCGTTGTTCGTGTCGATTGCGTAATCTCCGACGACGATTCG 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 GTTCCTCAAGTCGATAACGTCGTTGTTCGTGTCGATTGCGTAATCTCCGACGACGATTCG 371
Query 340 TCGTCTTTATCATCTATCAAATCTCGCTCCGGTTCTTCCGCTGGATCGTTCTCGGCTATA 399
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 372 TCATCTTTGTCATCTATCAAATCTCGCTCCGGTTCTTCCGCTGGTTCGTTCTCGGCTATA 431
Query 400 TTTCGTCTTGTTGTTGGTGGCATTGTTAAGCCGTTACAAGCTTTAGGTCAATTCCTTGGT 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TTTCGTCTTGTTGTTGGTGGCATTGTTAAGCCGTTACAAGCTTTAGGTCAATTCCTTGGT 491
Query 460 ACGAAGAGATCATCAT------GTGGTGGTTCTGGATCTTCTTCTTC---GTTGTCTATT 510
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 492 ACGAAGAGATCATCATCATCATGTGGTGGTTCTGGATCTTCTTCTTCTTCGTTGTCTATT 551
Query 511 AGTGGAGATGATGAAGGTGGAGAGATCGAACAAGGCGGTGTTACGCATCATTCTCCTACA 570
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 552 AGTGGAGATGATGATGGTGGAGAGATCGAACAAGGCGGTGTTACGCATCATTCACCTACT 611
Query 571 CAGGTTTTGAAAAACTTCGATGAGATTCGTTACTTACGTATTGAGCTTCCTAGTGGTGAA 630
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 612 CAGGTTTTGAAAAACTTCGATGAGATTCGTTACTTAAGAATTGAGCTTCCTAGTGGTGAA 671
Query 631 TTAGGGATTGATGATGGAGTTTTGTTGAAATGGAGAGCTGAATTTGGTTCAACTCTTGAT 690
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 672 TTAGGGATTGATGATGGAGTTTTGTTGAAATGGAGAGCTGAATTTGGTTCTACTCTTGAT 731
Query 691 AATTGTGTGATTCTCGGTGCTTCTTCGGTGATTCAACCGAATCCGATGAGAATTTCTCAA 750
|||||||||||||||||||||||||| ||||||| ||| ||||| |||||| ||||||||
Sbjct 732 AATTGTGTGATTCTCGGTGCTTCTTCAGTGATTCCACCAAATCCAATGAGAGTTTCTCAA 791
Query 751 GCC-GTGGACACTAGTACAGTCGTTGAAGCTTCCGGTTCCGGCTCTGATGATAATGGGAG 809
|| ||| | |||| |||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct 792 GCTTGTG-ATACTACTACAGTCGTTGAAGCTCCCGGTTCTGGCTCCGATGATAATGGGAG 850
Query 810 TATACCGGAATCGTTTTACACAAACGGAGGATTGAAATTGCGTGTTGTATGGACAATTAG 869
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 851 TATACCGGAATCGTTTTACACAAACGGAGGTTTGAAATTGCGTGTTGTATGGACGATTAG 910
Query 870 CTCTTTGATTGCTGCATCAGCACGACATTACTTGTTACAGCCGATAATCGCGGAGCATAA 929
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 911 CTCTTTGATTGCTGCATCAGCACGACATTACTTGTTACAACCGATAATCGCGGAGCATAA 970
Query 930 GACACTTGATAGTTTAGTTCTCACTGATTCTGATGGGCAAGGTGTGCTTTGTATGAACAG 989
||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 971 GACGCTTGATAGTTTAGTGCTCACTGATTCAGATGGGCAAGGTGTGCTCTGTATGAACAG 1030
Query 990 AGAGCAGCTAGAAGAGCTAAGAGTGAAACCATTAGCAGCTTCATCCGCTTCGAAGAGGAC 1049
||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 1031 AGATCAGCTAGAAGAGCTTAGGGTGAAACCATTAGCAGCTTCATCGGCTTCGAAGAGGAC 1090
Query 1050 ACTTGTGCCTGCTTTGAATATGAGACTTTGGTATGCTCCAACCTTGGAATTGCCTGATGG 1109
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1091 ACTTGTGCCTGCTCTGAATATGAGACTATGGTATGCTCCAACCTTGGAATTGCCTGATGG 1150
Query 1110 AACTGTGTTAAAAGGTGCGACTTTAGTAGCGATAAGACCAAGCGAGTCTAAAAGGGAAGT 1169
|||||||||||||||||||||||| || ||||||||||| || || || |||| ||||||
Sbjct 1151 AACTGTGTTAAAAGGTGCGACTTTGGTTGCGATAAGACCGAGTGAATCGAAAAAGGAAGT 1210
Query 1170 GTCTGATATCTCTTGGGTATCTTCGGCTTTCGAGGAGCCTTATGAGACAGCTGCGAAGAT 1229
|||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1211 GTCTGATATCTCTTGGGTGTCTTCGGCTTTTGAGGAGCCTTATGAGACGGCTGCTAAGAT 1270
Query 1230 GCTGGTTAAGAGAAGGACTTACTGTCTTGAAATGAACTCGTTCTAGCTTGCAAAC-TTTC 1288
||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1271 GCTGGTTAAAAGAAGGACTTACTGTCTTGAAATGAACTCGTTCTAGCTTG-AATGGTTTC 1329
Query 1289 AGTTAAAATCTGAGAGAACTGGCAACCCGGTGGCGAATTCAGGATATTGCAATTAAAAGC 1348
||| |||||||||||||||||||||| ||||||||||||||| ||| |||||||||||
Sbjct 1330 AGTCGGAATCTGAGAGAACTGGCAACCCTGTGGCGAATTCAGGAAATTACAATTAAAAGC 1389
Query 1349 CTAGAATGGGG-GAAGCAGAGAATGAAATAAAATCGAAGTTTTGATGAATCCAGAAACAA 1407
|| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1390 ATATAATGGGGAGAAGCAGAGAATGAAATAAAATCGAAGTTTTGATGAATCAAGAAACAA 1449
Query 1408 GTTTTGCTGCCTACTAC--C-GCATCTGCTAGCTAGTTTTTTCATTGAAGCATATGCCTT 1464
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1450 GTTTTGCTGCCTACTACTACTGCATCTGCTAGCTAGTTTTTTCATTGAAGCATATGCCTT 1509
Query 1465 TGCAGGATCTCGCAATCatatata-taatatatCAACAAATTACAGATATCATGTAAGAG 1523
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1510 TGCAGGATCTCGCAATCATATATAATA-TATATCAACAAATTACAGATATCATGTAAGAG 1568
Query 1524 tttttcttatcttttttctgt-tctt-cttctcctttgcttgctcttctctATTTATGTG 1581
|||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 1569 TTTTTCTTTTCTTTTTTCTGTCTTTTTCTTCTCCTTTGCTTGCTCTTCTCTATTTATGTG 1628
Query 1582 AATATTGTAGGTATTATTGCTTATTCCCCTGTCATTATACAAGTTATTTAAGATTGTAGA 1641
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AATATTGTAGGTATT---GCTTATTCCCCTGTCATTATACAAGTTATTTAAGATTGTAGT 1685
Query 1642 TTT 1644
|||
Sbjct 1686 TTT 1688
> AT4G18380.1 | Symbols: | F-box family protein | chr4:10157887-10159748
FORWARD LENGTH=1673
Length=1673
Score = 715 bits (387), Expect = 0.0
Identities = 908/1147 (79%), Gaps = 85/1147 (7%)
Strand=Plus/Plus
Query 156 AACC-CTAGAAATCGACCATTTCGATCGTCTGCCTGACTCAATCCTCCTCCTCGTTTTCA 214
|||| | |||||||||||| |||||| || || |||||||||||||||||| | ||||
Sbjct 123 AACCACAAGAAATCGACCACTTCGATAACCTCCCAGACTCAATCCTCCTCCTCATCTTCA 182
Query 215 ACAAAATCGGTGACGTTAAAG-CTCTCGGAAGATGCTGTGTCGTTTCCCGGAGATTTCAT 273
|||| ||||| ||||| |||| || | || | |||| ||||| ||| ||||| |||
Sbjct 183 ACAACATCGGCGACGTCAAAGCCT-TAGGTCGTTGCTCCGTCGTCTCCAAAAGATTCCAT 241
Query 274 T-CTCTCGTTCCTCAAGTCGATAACGTCGTT-GTTCGTGTCGATTGCGTAATCTCCGACG 331
| || | | ||||||||||| || ||| || ||||||||||||||||| ||||||||||
Sbjct 242 TCCT-TAATCCCTCAAGTCGAAAATGTC-TTCGTTCGTGTCGATTGCGTTATCTCCGACG 299
Query 332 ACGATTCGTCGTCT-TTATCAT-CTATCAAATCTCGCTCCGGTTCTTCCGCTGGAT-CGT 388
||||||| || ||| | || | | || ||| |||| |||| || ||||| | | |
Sbjct 300 ACGATTCTTCCTCTCTCCTC-TCCGAT-AAACCTCGATCCGCCTCCGCCGCT-TCTCCTT 356
Query 389 TCTCGGCTATATTTCGTCTTGTTGTTGGTGGCATTGTTAAGCCGTTACAAGCTTTAGGTC 448
|||| || || |||| | | | | || | | | ||||||||||||||||| || |
Sbjct 357 TCTCCGCCAT-TTTC--C--G-T-CTCGT--C--T-TCAAGCCGTTACAAGCTTTGGGAC 404
Query 449 AATTCCTTGGTACG--AAGAGATCATCATGTGGTGGTTCTGGATC-T-T-CTTCTTCGTT 503
| |||||| ||| || | || || | | | ||| ||||| | | ||||||||||
Sbjct 405 AGTTCCTT-AAACGCTCAG-GTTCTTCTTCTCTTCCTTCAGGATCATCTCCTTCTTCGTT 462
Query 504 GTCT-ATTAGTGGAGATGATGAAGGTGGAGAGATCGAACAAGGCGGTGTTACGCATCATT 562
|| | |||||||| | ||||| | ||||||||| |||||||| ||||| ||||||||||
Sbjct 463 GT-TGATTAGTGGTGGTGATG-A--TGGAGAGATTGAACAAGGAGGTGTAACGCATCATT 518
Query 563 CTCCTACACAGGTTTTGAAAAACTTCGATGAGATT-CGTTACTTACGTATTGAGCTTCCT 621
| || || ||||||||||||||||||||||||||| ||| |||| || |||||||||
Sbjct 519 CACCGACTCAGGTTTTGAAAAACTTCGATGAGATTAAGTTTCTTA-AAATCGAGCTTCCT 577
Query 622 AGTGGTGAATTAGGGATTGATGATGGAGTTTTGTTGAAATGGAGAGCTGAATTTGGTTCA 681
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 578 AGTGGTGAATTAGGGATTGATGATGGTGTTTTATTGAAATGGAGAGCTGAATTTGGTTCT 637
Query 682 ACTCTTGATAATTGTGTGATTCTCGGTGCTTCTTCGGTGATTCAACCGAATCCGATGAGA 741
||||| || ||||||||||| ||||||||||| || |||||| ||| |||| ||
Sbjct 638 ACTCTCGAGAATTGTGTGATCCTCGGTGCTTCCTCTGTGATT---CCG---CCGA--CGA 689
Query 742 ATTTC---TCAAGCCGTGGACACTAGTACAGTCGTTGAAGCTTCCGGTTC-CGGCTCT-G 796
| ||| | ||| | || | || | | ||| || ||| | || |||| | |
Sbjct 690 A-TTCGGAT-AAGAC--GG--A--AG--C-G-AGTT-CGGC-TCCCG-TCGCGGCGGTGG 734
Query 797 ATGATAATGGGAGTATACCGGAATCGTTTTACACAAACGGA-GGATTGAAATTGCGTGTT 855
| |||||||| |||||||||||||||||||| ||||||||| || || || | ||||||
Sbjct 735 AAGATAATGGAAGTATACCGGAATCGTTTTATACAAACGGAGGGCTT-AAGCTACGTGTT 793
Query 856 GTATGGACAATTAGCTCTTTGATTGCTGCATCAGC-ACGACATTACTTGTTACAGCCGAT 914
|||||||| || ||||||||||||||||| || || | ||||||||||||| || |||||
Sbjct 794 GTATGGACTATAAGCTCTTTGATTGCTGCTTCCGCTA-GACATTACTTGTTGCAACCGAT 852
Query 915 AATCGCGGAGCATAAGACACTTGATAGTTTAGTTCTCACTGAT-TCTGATGGGCAAGGTG 973
|| || ||||||||||| |||||||||||||| || |||||| | |||||| ||||| |
Sbjct 853 TATAGCAGAGCATAAGACGCTTGATAGTTTAGTGCTTACTGATGT-TGATGGTCAAGGAG 911
Query 974 TGCTT-TGTATGAA-CAGAGAGCAGCTAGAAGAGCTAAGAGTGAAACCATTAG-CAGCTT 1030
| || |||||||| | |||| ||| |||| || | |||||||||||||| | ||||||
Sbjct 912 T-TTTGTGTATGAATC-GAGATCAGTTAGAGGAATTGAGAGTGAAACCATT-GTCAGCTT 968
Query 1031 CATCCGCTTCGAAGAGGACACTTGTGCCTGCTTTGAATATGAGACTTTGGTATGCTCCAA 1090
| || ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 969 CTTCAGCTTCTAAGAGGACTCTTGTACCTGCTTTGAATATGAGACTTTGGTATGCTCCTT 1028
Query 1091 CCTTGGAATTGCCTGATGGAACTGTGTTAAAAGGTGCGACT-TTAGTAGCGATAAGACCA 1149
| ||||||||||||||||| |||||||| || || || || || || ||||| || ||
Sbjct 1029 CTTTGGAATTGCCTGATGGGACTGTGTTGAAGGGAGCTACGCTT-GTGGCGATTAGGCCG 1087
Query 1150 AGCGAGTCTAA-AAGGGAAGTGTCTGATATCTCTTGGGTATCTTCGGC-TTTCGAGGAGC 1207
|| ||||| || |||| | |||| |||| | |||||||| ||||| || ||| || ||||
Sbjct 1088 AGTGAGTCGAAGAAGG-AGGTGTGTGATGTGTCTTGGGTTTCTTCTGCGTTT-GATGAGC 1145
Query 1208 CTTATGAGACAGCTGCGAAGATGCTGGTTAAGAGAAGGACTTACTGTCTTGAAATGAACT 1267
|||||| | |||||| |||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 1146 CTTATGGGGTAGCTGCTAAGATGTTGGTTAAGAGAAGGACTTATTGTCTTGAAATGAATT 1205
Query 1268 CGTTCTA 1274
|||||||
Sbjct 1206 CGTTCTA 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81224481810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5