BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494366
Length=1981
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46110.4 | Symbols: APE2, TPT | Glucose-6-phosphate/phosphat... 2881 0.0
> AT5G46110.4 | Symbols: APE2, TPT | Glucose-6-phosphate/phosphate
translocator-related | chr5:18697250-18700656 FORWARD LENGTH=2037
Length=2037
Score = 2881 bits (1560), Expect = 0.0
Identities = 1883/2025 (93%), Gaps = 78/2025 (4%)
Strand=Plus/Plus
Query 13 ATTATTATCTTCCaaaaaaaCAAAATTATACAGATGATGA---TGATATGGAACTTCGAT 69
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATTATTATCTTCCAAAAAAACAAAATTATACAGATGATGATGGTGATATGGAACTTCGAT 60
Query 70 TGGCTAATATTCACTGTGTCTCTCTAAAAACCATCCACTTATCAAGATAAGATGGACCCT 129
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGCTAATATTCACTGTG--TCTCTAAAAACCATCCACTTATCAAGATAAGATGGACCCT 118
Query 130 ACACTCATCCAATCTAAACCAATATCTCACGATTCTTATCTAATCACATCATTCTCAACC 189
||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |||
Sbjct 119 ACACTCATCCAATCTAAACCAGTATCTCAAGATTCTTATCTAATTACATCATTCTCTACC 178
Query 190 GTTAGATCAAATTCACCATTAACCGTATCAT-ACGCCCATACACCGCGACACACTAGATT 248
||||||| ||||| |||||||||| || ||| || ||||||||||||| | ||| ||||
Sbjct 179 GTTAGATGAAATTGACCATTAACCCTACCATAAC-TCCATACACCGCGAGATACTGGATT 237
Query 249 AACCAAATCAAAATCATCGTAGCCGTCCGATCAACAAGTATCATCTCTTGAAATACTCGA 308
||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 238 AACCAAATCGAGATCATCGTAGCCGTCCGATCAACAAGTACCATCTCTTGAAATACTCGA 297
Query 309 AAACCTCATATCTTCGCTTCCTCTTTGCTCTCACTGTCTAAAACTCTGAATTTCGATTTC 368
|| ||||||| | || | |||||||||||||||| || |||||||||||||||||||||
Sbjct 298 AATCCTCATAAGTCCG-TCCCTCTTTGCTCTCACTATC-AAAACTCTGAATTTCGATTTC 355
Query 369 AATGGAGTCACGCGTGCTGTTACGCGCCACCGCGAATGTCGTCGGAATTCCGAAATTGAG 428
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 356 AATGGAGTCACGCGTGCTGTTACGCGCCACCGCGAATGTCGTTGGAATTCCGAAATTGAG 415
Query 429 ACGACCTATCGGAGCGATCCACCGTCAATTCAGCACTGCATCGTCGTCTTCGTCGTCGTT 488
|||||| ||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 416 ACGACCAATCGGAGCGATCCACCGTCAATTCAGCACTGCA---TCGTCTTC--C-TCGTT 469
Query 489 CTCGGTTAAACCAATCGGAGGAATCGGAGAAGGAGCGAATCTGATCTCCGGTCGTCAGCT 548
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 470 CTCGGTTAAACCAATCGGAGGAATCGGAGAGGGAGCGAATCTGATCTCCGGTCGTCAGCT 529
Query 549 TCGTCCGATTCTTCTTCTCGATTCGTCGGCGATCAACGGCGGAGAGAAAAGAGAGATTCT 608
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 530 TCGTCCAATTCTTCTTCTCGATTCGTCGGCGATCAACGGAGGAGAGAAAAGAGAAATTCT 589
Query 609 CAAACCGGTTAAAGCCGCCGCTGCTGAAGGTGGAGATACCGCTGGGGAAGCTAAAGTTGG 668
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 590 CAAACCGGTTAAAGCCGCCGCTGCTGAAGGTGGAGATACCGCTGGGGATGCTAAAGTTGG 649
Query 669 ATTCCTCGCCAAGTATCCATGGCTAGTCACTGGGTTCTTCTTCTTCATGTGGTACTTCTT 728
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 650 ATTCCTCGCCAAGTATCCATGGCTAGTCACTGGATTCTTCTTCTTCATGTGGTACTTCTT 709
Query 729 GAATGTGATTTTCAACATCCTTAACAAGAAGATCTATAATTACTTCCCTTATCCCTATTT 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GAATGTGATTTTCAACATCCTTAACAAGAAGATCTATAATTACTTCCCTTATCCCTATTT 769
Query 789 TGTATCGGTGATACACTTGTTCGTGGGAGTTGTATACTGCTTGATCAGCTGGTCCGTGGG 848
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 770 TGTATCGGTGATACACTTGTTCGTGGGAGTTGTTTACTGCTTGATCAGCTGGTCCGTGGG 829
Query 849 CCTTCCTAAACGAGCCCCAATTGACTCGAACCTCCTCAAGGTATTGATACCAGTTGCAGT 908
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 830 TCTTCCTAAACGTGCCCCGATTGACTCGAACCTCCTCAAGGTATTGATACCAGTCGCAGT 889
Query 909 CTGTCACGCCATAGGCCATGTCACTAGCAATGTTTCCTTCGCCGCGGTTGCTGTCTCCTT 968
|||||||||| |||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 890 CTGTCACGCCTTAGGCCATGTCACTAGCAATGTCTCTTTCGCTGCGGTTGCTGTCTCCTT 949
Query 969 CACCCACACCATCAAAGCACTTGAGCCATTCTTCAATGCGGCTGCTTCTCAATTCATTAT 1028
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 CACTCACACCATCAAAGCACTTGAGCCATTCTTCAATGCGGCTGCTTCTCAATTCATTAT 1009
Query 1029 GGGACAATCCATCCCCATAACACTATGGTTGTCTCTAGCTCCTGTTGTTCTTGGTGTTGC 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GGGACAATCCATCCCCATAACACTATGGTTGTCTCTAGCTCCTGTTGTTCTTGGTGTTGC 1069
Query 1089 AATGGCTTCACTAACTGAGCTATCATTCAACTGGCTCGGTTTCATCAGTGCCATGATCTC 1148
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1070 AATGGCTTCACTAACTGAGCTATCATTCAACTGGCTCGGTTTCATCAGTGCTATGATATC 1129
Query 1149 AAACATTTCTTTCACTTACCGAAGCATCTTCTCCAAGAAAGCCATGACTGATATGGACAG 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 AAACATTTCTTTCACTTACCGAAGCATCTTCTCCAAGAAAGCCATGACTGATATGGACAG 1189
Query 1209 TACCAATGTCTACGCTTACATCTCCATTATCGCTCTCTTCGTCTGCATTCCTCCTGCCAT 1268
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1190 TACAAATGTCTACGCTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCAT 1249
Query 1269 CATCGTTGAAGGTCCTAAACTACTGAACCATGGTTTCGCCGACGCGATTGCTAAAGTCGG 1328
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1250 CATCGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAGTTGG 1309
Query 1329 AATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCA 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 AATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCA 1369
Query 1389 GTTGGCTACTAATACCTTGGAGAGGGTCGCACCGCTGACTCACGCGGTTGGAAACGTTCT 1448
| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1370 GCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGAAACGTTCT 1429
Query 1449 GAAACGTGTGTTCGTGATCGGTTTCTCCATTGTTATCTTCGGAAACAAGATATCGACACA 1508
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1430 GAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGGAAACAAGATATCGACACA 1489
Query 1509 GACAGGTATAGGAACAGGAATAGCCATTGCTGGAGTTGCAATGTACTCTATCATTAAGGC 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 GACAGGTATAGGAACAGGAATAGCCATTGCTGGAGTTGCAATGTACTCTATCATTAAGGC 1549
Query 1569 CAAGATCGAAGAAGAGAAACGG--CA-A-GGAAAGAAAGCTTAGAGAGC-GAC-GTAAGA 1622
|||||||||||||||||||||| || | ||||||||||| |||| ||| | | | ||||
Sbjct 1550 CAAGATCGAAGAAGAGAAACGGGTCACAAGGAAAGAAAGCATAGAAAGCAG-CTG-AAGA 1607
Query 1623 CGGCGGTCGACGGTTGCATAAACAAGTCCTCCGATG-A-ATATAT-T-T--ATATAATAA 1676
||||||||||| ||||||||||||||| |||||||| | |||||| | | |||||||||
Sbjct 1608 CGGCGGTCGACAGTTGCATAAACAAGTTCTCCGATGGATATATATATATCTATATAATAA 1667
Query 1677 ATAACCAAATGCAATAGTATGTTGTATTGTACCATCAACCATTgttttcgagtttttcct 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 ATAACCAAATGCAATAGTATGTTGTATTGTACCATCAACCATTGTTTTCGAGTTTTTCCT 1727
Query 1737 ttctttgttttttt---gctttctgaaaagttatatataa-ttttttattctg-tt-tt- 1789
|||||||||||||| ||||||||||||||||||||||| |||||||||||| || ||
Sbjct 1728 TTCTTTGTTTTTTTTTTGCTTTCTGAAAAGTTATATATAAATTTTTTATTCTGCTTCTTC 1787
Query 1790 t------AATGGAGAACATTTCCATTTC--TTT-T---GATATGCAATTATCTTGACGGA 1837
| |||||||||||||| |||||| ||| | |||||||||||||||| |||||
Sbjct 1788 TCTTTTTAATGGAGAACATTTTCATTTCCATTTCTTCTGATATGCAATTATCTTAACGGA 1847
Query 1838 TAAAAGGCATAATAATGTATTTATTTGCTCTT--------A---TA--CCCATCATCGT- 1883
|||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1848 TAAAAGGCATAATAATGTATTTATTTGCTCTTTCTCTTGGAGCATATACCCATCATCGTG 1907
Query 1884 A-G-AG---TTAAATTTTAAATTTATCTT-TGTATAAAGTATTCTTTTGCTC-TTGCTAA 1936
| | || || | ||||| ||||| || | ||||| ||| ||| ||| |||||||
Sbjct 1908 ACGTAGAGCTTGAGGTTTAA-TTTAT-TTCT-TATAAC--ATT-TTT--CTCCTTGCTAA 1959
Query 1937 TTTTGTGTTTTCATCTGGTAATTGGTTATATATTGTTTTTGTAAT 1981
|||||| |||||| || |||||| |||||||||| ||||||||||
Sbjct 1960 TTTTGT-TTTTCAACTAGTAATTTGTTATATATTATTTTTGTAAT 2003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98142065475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5