BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494374
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46050.1 | Symbols: ATPTR3, PTR3 | peptide transporter 3 | c... 2793 0.0
AT5G46040.1 | Symbols: | Major facilitator superfamily protein... 1400 0.0
> AT5G46050.1 | Symbols: ATPTR3, PTR3 | peptide transporter 3 |
chr5:18675035-18679146 REVERSE LENGTH=1851
Length=1851
Score = 2793 bits (1512), Expect = 0.0
Identities = 1714/1812 (95%), Gaps = 11/1812 (1%)
Strand=Plus/Plus
Query 1 aaaa-aaagaaaaaaaGAAGATAGAGAGGAAATGACAGTAGAAGAGGTAGGAGACGATTA 59
|||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 45 AAAAGAAAGAAAGAAAGAAGGTAGAGAGGAAATGACAGTAGAAGAGGTAGGAGACGATTA 104
Query 60 TACAAAAGATGGAACAGTTGATCTTCGAGGCAATCCTGTTCGAAGATCCATTAGAGGTCG 119
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 105 CACAAAAGATGGAACAGTTGATCTTCAAGGCAATCCTGTTCGAAGATCCATTAGAGGTCG 164
Query 120 TTGGAAAGCTTGCTCTTTCGTCGTTGTGTACGAGGTGTTTGAACGGATGGCTTATTATGG 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 165 TTGGAAAGCTTGCTCTTTCGTTGTTGTGTACGAGGTGTTTGAACGGATGGCTTATTACGG 224
Query 180 GATATCAAGCAACCTAG-TGATATACATGACTACCAAATTGCACCAAGGCACGGTCGAGT 238
||||||||||||||| | | || |||||||| ||||||||||||||||| |||||| |||
Sbjct 225 GATATCAAGCAACCT-GTTTATTTACATGACAACCAAATTGCACCAAGGAACGGTCAAGT 283
Query 239 CGTCGAACAATGTGACCAATTGGGTTGGGACTAGTTGGCTCACTCCAATCTTGGGTGCTT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 CGTCGAACAATGTGACCAATTGGGTTGGGACTAGTTGGCTCACTCCAATCTTGGGTGCTT 343
Query 299 ATGTTGGAGACGCTCTTCTCGGTCGCTACATCACTTTCGTCATCTCTTGTGCTATCTACT 358
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 344 ACGTTGGAGACGCTCTTCTCGGTCGCTACATCACTTTCGTCATCTCTTGTGCTATCTA-T 402
Query 359 TT-TCGGGGATGATGGTGTTAACATTATCAGTAACTATACCGGGAATTAAGCCACCAGAA 417
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TTCTCGGGGATGATGGTGTTAACATTATCAGTAACTATACCGGGAATTAAGCCACCAGAA 462
Query 418 TGTTCCGCGGCTAAGT-TCGAAGATTGC-AAAAAGGCTTCGGTTTTACAATTAGCGGTTT 475
|||||| || |||| | | ||| ||||| ||||| |||||||||||||||||||| ||||
Sbjct 463 TGTTCCACGACTAA-TGTGGAAAATTGCGAAAAA-GCTTCGGTTTTACAATTAGCAGTTT 520
Query 476 TCTTTGGAGCGTTATACACCTTAGCAATCGGTACAGGTGGAACAAAACCGAACATATCAA 535
||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||
Sbjct 521 TCTTTGGAGCGTTATACACATTAGCAATCGGTACAGGCGGTACGAAACCGAACATATCAA 580
Query 536 CCATAGGAGCTGATCAATTCGATGTATTCGACCCAAAGGAGAAGACTCAAAAACTATCAT 595
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 CAATAGGAGCTGATCAATTCGATGTATTCGACCCAAAGGAGAAGACTCAAAAACTATCAT 640
Query 596 TCTTCAACTGGTGGATGTTTAGTATCTTCTTTGGTACTCTTTTCGCCAACACTGTTCTTG 655
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 641 TCTTCAACTGGTGGATGTTTAGTATCTTCTTTGGTACTCTCTTCGCCAACACTGTTCTTG 700
Query 656 TCTATGTTCAAGATAATGTTGGTTGGACTTTGGGGTATGGACTTCCAACATTAGGTCTGG 715
|||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||
Sbjct 701 TCTATGTTCAAGATAATGTTGGCTGGACCTTGGGTTATGGACTTCCAACATTAGGTTTGG 760
Query 716 CTATTTCCATTACCATTTTCTTGTTGGGTACTCCGTTTTACCGTCATAAACTTCCCACTG 775
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 761 CTATTTCCATTACCATTTTCTTGTTGGGCACTCCGTTTTACCGCCATAAACTTCCCACTG 820
Query 776 GAAGTCCTTTCACCAAGATGGCTCGAGTCATTGTGGCTTCATTTCGCAAAGCCAAAGCAC 835
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 821 GAAGCCCATTCACCAAGATGGCTCGAGTCATCGTGGCTTCATTTCGCAAAGCCAATGCAC 880
Query 836 CAATGGCGCATGACAACACAAGCTTCCACGAGCTACCCTCACTTGAATATGAGCGGAAAG 895
||||| ||||||||| ||| |||||||| ||||| || || |||||||||||||||||||
Sbjct 881 CAATGACGCATGACATCACGAGCTTCCATGAGCTGCCTTCTCTTGAATATGAGCGGAAAG 940
Query 896 GCGCCTTTCCGATCCAACCC-ACTCCAAGTTTACGATTCCTAGACAGAGCTTCACTCAAA 954
|||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 941 GCGCCTTTCCGATCCA-CCCTACTCCAAGTTTACGATTCTTAGACAGAGCTTCACTCAAA 999
Query 955 ACAGGAACAACTCATAAATGGAATCTTTGTACAACCACAGAAGTCGAAGAAACAAAACAA 1014
|||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1000 ACAGGAACAAATCATAAATGGAATCTTTGTACTACCACAGAAGTTGAAGAAACAAAACAA 1059
Query 1015 ATGCTGAGAATGTTACCTGTCTTGTTCATAACTTTCGTCCCAAGCATGATGCTTGCTCAA 1074
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1060 ATGCTGAGAATGTTACCAGTCTTGTTCATAACTTTCGTCCCAAGTATGATGCTTGCACAA 1119
Query 1075 ATCAACACTTTGTTTGTTAAACAAGGAACCACTCTAGACCGTAAGGTCACCGGATCTTTC 1134
|||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1120 ATCAACACATTGTTTGTGAAACAAGGAACCACTCTAGACCGAAAGGTTACCGGATCTTTC 1179
Query 1135 AGCATCCCACCAGCAAGTCTCTCCGGTTTTGTCACACTCTCAATGCTCATTTCCATAGTC 1194
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1180 AGCATCCCACCAGCGAGTCTCTCCGGATTTGTCACACTCTCAATGCTTATTTCCATAGTC 1239
Query 1195 TTATATGATCGAGTCTTCGTCAAGATAACCCGAAAATTCACCGGAAATCCAAGAGGCATT 1254
|| ||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1240 TTGTATGACCGAGTTTTCGTCAAGATAACCCGAAAATTCACTGGTAATCCAAGAGGCATT 1299
Query 1255 ACTTTGCTTCAACGAATGGGAATTGGTCTTATCTTCCATATCCTCATCATGATCGTTGCA 1314
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1300 ACTTTGCTTCAACGAATGGGAATTGGTCTTATCTTTCATATCCTCATCATGATCGTCGCA 1359
Query 1315 TCTGTCACTGAAAGGTATAGACTCAAGGTCGCTGCTGATCATGGTCTCATTCACCAAACC 1374
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1360 TCTGTCACTGAAAGGTATAGACTCAAAGTCGCTGCTGATCATGGTCTCATCCACCAAACC 1419
Query 1375 GGAGTAAAACTACCTTTAACCATCTTTGCTTTACTTCCACAATTCGTCCTAATGGGTATG 1434
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1420 GGAGTAAAACTACCATTAACCATCTTTGCTTTGCTTCCACAATTCGTCCTAATGGGTATG 1479
Query 1435 GCTGATTCGTTCTTAGAAGTTGCAAAGCTCGAGTTCTTCTACGATCAAGCTCCCGAGAGC 1494
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1480 GCTGATTCGTTCTTAGAAGTTGCAAAGCTTGAGTTTTTCTACGATCAAGCTCCCGAGAGC 1539
Query 1495 ATGAAAAGCCTCGGGACATCATATTCGACAACGAGTTTAGCGATTGGGAATTTCATGAGC 1554
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1540 ATGAAAAGCCTCGGGACATCATATTCGACAACGAGTTTGGCGATTGGGAATTTCATGAGC 1599
Query 1555 AGTTTCTTGTTATCAACAGTGTCAGAGATCACAAAGAAACGAGGAAGAGGATGGATTTTG 1614
|||||||||||||| || || || ||||| ||||||||||||||||||||||||||||||
Sbjct 1600 AGTTTCTTGTTATCTACGGTATCTGAGATAACAAAGAAACGAGGAAGAGGATGGATTTTG 1659
Query 1615 AACAATCTGAACGAGTCTAGGTTGGATTATTACTACTTGTTCTTTGCGGTACTTAATCTG 1674
||||| || || ||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 1660 AACAACCTTAATGAGTCTAGGTTGGATTACTATTACCTGTTCTTTGCGGTACTTAATCTG 1719
Query 1675 GTTAACTTCGTCTTGTTCTTGGTCGTGGTTAAGTTTTATGTTTATAGAGCTGAGGTTACT 1734
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 GTTAACTTCGTTTTGTTCTTGGTCGTGGTTAAGTTTTATGTTTATAGAGCTGAGGTTACT 1779
Query 1735 GATTCAGTGGGTGTGAAAGAGGTGGAAATGAAAGAGAATGAATGACAAATAATGAATAAT 1794
||||| || | |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1780 GATTCGGTTGATGTGAAAGAGGTGGAAATGAAAGAGACTGAATAACAAATAATGAATAAT 1839
Query 1795 ATAGTTTTTTCT 1806
|||| ||| |||
Sbjct 1840 ATAGATTTCTCT 1851
> AT5G46040.1 | Symbols: | Major facilitator superfamily protein
| chr5:18671397-18673551 REVERSE LENGTH=1761
Length=1761
Score = 1400 bits (758), Expect = 0.0
Identities = 1431/1746 (82%), Gaps = 86/1746 (5%)
Strand=Plus/Plus
Query 31 ATGACAGTAGAAGAGGTAGGAGACGATTATACAAAAGATGGAACAGTTGATCTTCGAGGC 90
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACAGTAGAAGAGGTAGGAGATGATTATACAAAAGATGGAACAGTTGATCTTCGAGGA 60
Query 91 AATC-CTGTTCGAAGAT-CCATTAGAGGTCGTTGGAAAGCTTGCTCTTTCGTCGTTGTGT 148
|||| | || ||||||| ||| | ||| |||||||||||||| || |||||||||||||
Sbjct 61 AATCGC-GTCCGAAGATCCCA-AACAGGCCGTTGGAAAGCTTGTTCCTTCGTCGTTGTGT 118
Query 149 ACGAGGTGTTTGAACGGATGGCTTATTATGGGATATCAAGCAACCTAGTGATATACATGA 208
|||||||||||||| | ||||| |||||||| ||||||||||||||||| || |||||||
Sbjct 119 ACGAGGTGTTTGAAAGAATGGCGTATTATGGAATATCAAGCAACCTAGTTATCTACATGA 178
Query 209 CTACCAAATTGCACCAAGGCACGGTCGAGTCGTCGAACAATGTGACCAATTGGGTTGGGA 268
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 179 CTACCAAATTGCACCAAGGCACGGTCAAGTCGTCGAACAATGTGACCAACTGGGTTGGGA 238
Query 269 CTAGTTGGCTCACTCCAATCTTGGGTGCTTATGTTGGAGACGCTC-TTCTCGGTCGCTAC 327
|||||||||||||||||||||||||||||||||||| || |||| || |||||||||||
Sbjct 239 CTAGTTGGCTCACTCCAATCTTGGGTGCTTATGTTGCTGATGCTCATT-TCGGTCGCTAC 297
Query 328 ATCACTTTCGTCATCTCTTGTGCTATCTACTT-TTCGGGGATGATGGTGTTA---ACATT 383
||||||||||||||||||| |||||||| || || ||| | |||| ||| ||| |
Sbjct 298 ATCACTTTCGTCATCTCTTCCGCTATCTATTTATT-GGG-A--ATGGCATTACTGACACT 353
Query 384 ATCAGTAACTATACCGGGAATTAAGCCACCAGAA-TGTTCCG-CGGCTAA-GTTCGAAGA 440
||||||| | |||||||| |||| ||||| ||| ||||| | ||||||| ||| ||| |
Sbjct 354 ATCAGTATCGCTACCGGGACTTAAACCACC-GAAATGTTC-GACGGCTAATGTT-GAAAA 410
Query 441 -T-TGCAAAAAGGCTTCGGTTTTACAATTAGCGGTTTTCTTTGGAGCGTTATACACCTTA 498
| || |||||| |||||||| |||| |||||||| |||||||||||||||||||| |||
Sbjct 411 CTGTG-AAAAAG-CTTCGGTTATACAGTTAGCGGTATTCTTTGGAGCGTTATACACATTA 468
Query 499 GCAATCGGTACAGGTGGAACAAAACCGAACATATCAACCATAGGAGCTGATCAATTCGAT 558
|||||||||||||| || |||||||||||||| || || ||||| |||||||||||||||
Sbjct 469 GCAATCGGTACAGGCGGTACAAAACCGAACATTTCTACAATAGGTGCTGATCAATTCGAT 528
Query 559 GTATTCGACCCAAAGGAGAAGACTCAAAAACTAT-CATTCTTCAACTGGTGGATGTTTAG 617
| ||| ||||||||||| |||| ||| |||| || |||||||||| ||||||||||||||
Sbjct 529 GAATTTGACCCAAAGGACAAGATTCATAAAC-ATTCATTCTTCAATTGGTGGATGTTTAG 587
Query 618 TATCTTCTTTGGTACTCT-TTTCGCCAACA-CTGTTCTTGTCTATGTTCAAGATAATGTT 675
|||||||||||||||| | ||| || | || |||||||||||||||||||||||||||||
Sbjct 588 TATCTTCTTTGGTACTTTCTTT-GCTA-CAACTGTTCTTGTCTATGTTCAAGATAATGTT 645
Query 676 GGTTGGACTTTGGGGTATGGACTTCCAACATTAGGTCTGGCTATT-TCCATTACCATTTT 734
|||||| | | || ||||| ||| |||| || || || ||| || |||||| ||| ||
Sbjct 646 GGTTGGGCCATAGGTTATGGGCTTTCAACTTTGGGACTTGCT-TTCTCCATTTTCATATT 704
Query 735 CTTGTTGGGTACTCCGTTTTACCGTCATAAACTTCCCACTGG-AAGTCCTTTCACCAAGA 793
||||||||| |||| ||| ||||| |||||||| |||| ||| ||| || ||||||||||
Sbjct 705 CTTGTTGGGAACTCGGTTATACCGACATAAACT-CCCAATGGGAAGCCCATTCACCAAGA 763
Query 794 TGGCTCGAGTCATTGTGGCTTCATTTCGCAAAGCCAAAGCA-CCAATGGCGCA-TGA--C 849
||||| ||||||| ||||||||| ||||||||||| | | || ||| || | ||| |
Sbjct 764 TGGCTAGAGTCATCGTGGCTTCACTTCGCAAAGCCCGCG-AGCCGATGTCG-AGTGATTC 821
Query 850 AACACAAGCTTCCACGAGCTACCCTCACT-TG-AATATG--AGCGGAAAGGCGCCTTTCC 905
|| | ||||| | ||||| || | || || |||||| ||| ||||| || |||||
Sbjct 822 GACGC--GCTTCTATGAGCTTCCA-C-CTATGGAATATGCTAGCA-AAAGG-GC-TTTCC 874
Query 906 GA-TCCAACCCACTCCAAGTTTACGATTCCTAGA-CAGAGCTTCACTCAAAACAGGAACA 963
| |||| | ||| ||||| || ||||| || | | |||||||||||||||| ||| ||
Sbjct 875 CAATCCATTCTACTTCAAGTCTAAGATTCTTAAATC-GAGCTTCACTCAAAACCGGATCA 933
Query 964 ACTCATAAATGGAATCTTTGTACAACCACAGAAGTCGAAGAAACAAAACAAATGCTGAGA 1023
|| |||||||||| || ||||| | ||||||||| |||||||||||||| ||||| | |
Sbjct 934 ACCCATAAATGGAGGCTCTGTACTATCACAGAAGTGGAAGAAACAAAACAGATGCTAAAA 993
Query 1024 ATGTTACCTGTCTTGTTCATAACTTTCGTCCCAAGCATGATGCTTGCTCAAATCAAC-AC 1082
|||||||||||| | ||| |||| ||||||||||||||||||||||||||||| || ||
Sbjct 994 ATGTTACCTGTCCTCTTCGTAACATTCGTCCCAAGCATGATGCTTGCTCAAAT-AATGAC 1052
Query 1083 TTTGTTTGTTAAACAAGGAACCACTCTAGACCGTAAGG-TCACCGG-ATCTTTCAGCATC 1140
| |||| | ||||||||||| || || |||||| | |||| | ||| |||||||
Sbjct 1053 TCTGTTCATCAAACAAGGAACGACCCTCGACCGTC-GTCTCACAAACAACTT-CAGCATC 1110
Query 1141 CCACCAGCAAGTCTC-TCCGGTTTTGTCA-CACTCTCAATGCTCATTTCCATAGTCTTAT 1198
||||| ||||||||| | || || || || ||||||||||| | || |||||| |||
Sbjct 1111 CCACCCGCAAGTCTCCTA-GGCTTCA-CAACATTCTCAATGCTCGTCTCTATAGTCATAT 1168
Query 1199 ATGATCGAGTCTTCGTCAAGATAACCCGAAAATTCACCGGAAATCCAAGAGGCATTACTT 1258
| || || ||||| || ||| | | ||||| | ||||||||||||||||| || || |
Sbjct 1169 ACGACCGTGTCTTTGTTAAGTTCATGAGAAAACTAACCGGAAATCCAAGAGGTATCACAT 1228
Query 1259 TGCTTCAACGAATGGGAATTGGTCTTATC-TTCCATATCCTCATCATGATCGTTGCATCT 1317
||||||| ||||||||||| ||| | ||| ||| | ||||| ||||||||| | || ||
Sbjct 1229 TGCTTCAGCGAATGGGAATCGGTATGATCCTTC-ACATCCTAATCATGATCATCGCGTCC 1287
Query 1318 GTCACTGAAAGGTATAGACTCAAGGTCGCTGCTGATCATGGTCTCATTCACCAAACCGGA 1377
| || ||| ||||||| ||||||||||||||||| || || || | ||||| ||||
Sbjct 1288 ATAACCGAACGGTATAGGCTCAAGGTCGCTGCTGAACACGGGCTAACCCACCAGACCGCT 1347
Query 1378 GTAA-AACTACCTTTAACCATCTTTG-CTTTACTTCCACAAT-TCGTCCTAATGGGTATG 1434
||| || | ||||| | ||| ||| | || |||||||| | | || ||||||||| ||
Sbjct 1348 GTACCAATT-CCTTTGAGCAT-TTTCACATTGCTTCCACAGTAT-GTACTAATGGGTTTG 1404
Query 1435 GCTGATTCGTTCTTAGAAGTTGCAAAGCTCGAGTTCTTCTACGATCAAGCTCCCGAGAGC 1494
|| ||| | ||| ||||| | |||||||| ||||| |||||||||||||| || |||||
Sbjct 1405 GCAGATGCTTTCATAGAAATAGCAAAGCTGGAGTTTTTCTACGATCAAGCACCAGAGAGT 1464
Query 1495 ATGAAAAGCCTCGGGACATCATATTCGA-CAACGAGTTTAGCGATT-GGGAATTTCATGA 1552
|||||||||||||||||||||||| ||| || | ||| | || | | ||| |||||||||
Sbjct 1465 ATGAAAAGCCTCGGGACATCATATACGAGCA-CAAGTATGGC-AGTCGGGTATTTCATGA 1522
Query 1553 GCAGT-TTCTTG-TTATCAACAGTGTCAGAGATCACAAAGAAACGAGG-AAGAGGATGGA 1609
|||| || ||| || || ||||||| |||| |||||||| | ||| |||||||||||
Sbjct 1523 GCAGCATT-TTGCTT-TCGTCAGTGTCTCAGATAACAAAGAAGC-AGGGAAGAGGATGGA 1579
Query 1610 TTTTGAACAATCT-GAACGAGTCTAGGTTGGATTATTACTACTTGTTCTTTGCGGTACTT 1668
|| ||||| || ||| ||||||||| ||||| | || ||| ||||||| |||||||||
Sbjct 1580 TTCAAAACAA-CTTGAATGAGTCTAGGCTGGATAACTATTACATGTTCTTCGCGGTACTT 1638
Query 1669 AATCTGGTTAACTTCGTCTTGTTCTTGGTCGTGGTTA-AGTTTTATGTTTATAGAGCTGA 1727
||| || |||||||| || | |||||||| || ||| | ||||||| || ||||||||
Sbjct 1639 AATTTGCTTAACTTCATCCTCTTCTTGGTTGTAATTAGA-TTTTATGAGTACAGAGCTGA 1697
Query 1728 GGTTAC 1733
|||||
Sbjct 1698 TGTTAC 1703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89356970100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5