BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494426
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45590.1 | Symbols: | Ribosomal protein L35 | chr5:18484450... 1055 0.0
> AT5G45590.1 | Symbols: | Ribosomal protein L35 | chr5:18484450-18486284
REVERSE LENGTH=772
Length=772
Score = 1055 bits (571), Expect = 0.0
Identities = 684/735 (93%), Gaps = 21/735 (3%)
Strand=Plus/Plus
Query 1 CAATCAGAAAATTGTTCTTCCTCTTGGAGACGACAATGCAGAGGTTTTGCACTAAGCTAC 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 23 CAATCAGAAAATTGTTCTTCCCCTTGGAGACGACAATGCAGAGGTTTTGCACTAAGCTAC 82
Query 61 GTTCCATTTCCCTCCAATCTAATCGGAATCTCTCTTTTTCCGGTGCTGCTCCTCACCGTC 120
|||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 83 GTTCCATTTCTCTCCAATCTAATCGGAATCTCTCTTTTTACGGTGCTTCTCCTCACCGTC 142
Query 121 TCATTCACCA------TTCTCCGACTCGTCACTT---AACAACAACCCTAGGTTTCGCCA 171
|||||||||| |||||||| ||||||||| |||||||||||||||||| ||||
Sbjct 143 TCATTCACCATTCTCCTTCTCCGAGTCGTCACTTAACAACAACAACCCTAGGTTTTGCCA 202
Query 172 ATTCCACCAAATGGAGCTTCGTTCCCGCCGCCGGAGTTTCTCCTTTGAATATTAGCTCCA 231
||||||||||||||||||||||||||||||||||||||| ||| | |||| |||||||||
Sbjct 203 ATTCCACCAAATGGAGCTTCGTTCCCGCCGCCGGAGTTTTTCCGTCGAATGTTAGCTCCA 262
Query 232 TGGGCTCTACCTTTGTTCCTCATCACTTTGTTCAAGTACGGAATATCACTTCCAAGGAAA 291
||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 263 TGGGCACTACCTTTGTTCCTCATCACTTTGTTCAAGTACGAAATATCACTTCTAAGGAAA 322
Query 292 AAATGGCAAAATGGAAGAAGAAGTGGAGACCTAGGACTCCAATCACATCAAAAGTCAAGA 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 AAATGGCAAAATGGAAGAAGAAGTGGAGACCTAGGACTCCAATCACATCAAAAGTCAAGA 382
Query 352 AAGTCAAGATCAAGTTTTATTCGTCATTCAAAGACAGGTTTAAACCACTAAATGATGGTA 411
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 AAGTCAAGATTAAGTTTTATTCGTCATTCAAAGACAGGTTTAAACCACTAAATGATGGTA 442
Query 412 CCATCCGTCGCTGGAAAGAGGGCAAGCGCCACAACGCACACTTGAAGTCAAAGAAATCAA 471
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 443 CCATCCGTCGCTGGAAAGAAGGCAAGCGCCACAACGCACATTTGAAGTCAAAGAAATCGA 502
Query 472 AGCGTAGATTGAGACAGCCTGGACTAGTACCACCAGCATATGCCAAAGTTATGAAGAAAC 531
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 503 AGCGTAGATTGAGACAACCTGGACTAGTACCACCAGCATATGCGAAAGTCATGAAGAAAC 562
Query 532 TCAATTTCTGCAATTGAGAGATAGAGAAAGAAACAATATGATTACGATGAAAGCCAATCT 591
|||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||
Sbjct 563 TCAATTTCTGCAATTGAGAGATAGAGCATGAAACAGTATGATTACGATGAAAGCCAGTCT 622
Query 592 CTTCCAGTTTTTTCCCAGATAATTTTGCTCACTGGTACCCAAAAA-TCTTCATGTTTCAG 650
|||||||||||| || |||||||||||||||||||||| |||||| |||| |||||||||
Sbjct 623 CTTCCAGTTTTTACC-AGATAATTTTGCTCACTGGTACTCAAAAAATCTTTATGTTTCAG 681
Query 651 TT-AACCTT-ATTGGAATAAATTGGCATTTTAGTTTTTGAAATCTGGTGAAATTGGCATT 708
|| ||| || |||||||||||||| | ||||| ||||| ||||||||||||| ||
Sbjct 682 TTTAAC-TTCATTGGAATAAATTG--A-----GTTTTCGAAATATGGTGAAATTGGCGTT 733
Query 709 AAGACTGATCGGTTT 723
|||||||||||||||
Sbjct 734 AAGACTGATCGGTTT 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36469990722
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5