BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494432
Length=4102
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45510.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 2447 0.0
> AT5G45510.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr5:18444657-18449446 FORWARD LENGTH=4185
Length=4185
Score = 2447 bits (1325), Expect = 0.0
Identities = 1830/2056 (89%), Gaps = 105/2056 (5%)
Strand=Plus/Plus
Query 16 aga-aaagggagagatagtgagagagaCAAAGCAGAAGTTGACTTTC-CTTTGCGGAGAA 73
||| |||| |||||| || |||||||| |||||||| |||||| ||| |||||| |||||
Sbjct 38 AGAGAAAGTGAGAGAGAGAGAGAGAGATAAAGCAGAGGTTGAC-TTCGCTTTGCTGAGAA 96
Query 74 GGCAAAGAGCTCgagagagagagaAGACTAACTCTCATCAGCGACGAATATCTGATCCCT 133
|||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 97 GGCAAAGAGCTCGA-A-AGAGAGAAGACTAACTCTCATCAGCGACGAATGTCTGATCCGT 154
Query 134 TGAAGATGGC-G--GAGACGGTGGAGATT--A--A-----A-C--C------AGAAAACA 172
|||||||||| | ||||||| ||||||| | | | | | |||||| |
Sbjct 155 TGAAGATGGCGGCCGAGACGGAGGAGATTAAACCAGTTCCAGCAGCAATGGGAGAAAAGA 214
Query 173 AGGATGTGATGTTGTGTAAGAAGATAGTGGAAACTCTGGGAGGAAATGGTGATCAAAGAG 232
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 215 AGGATGTGGTGTTGTGTAAGAAGATAGTGGAAACTCTGGGAGGAGGTGGTGATCAAAGAG 274
Query 233 TATTGTTGGTTGGCAAAGCTGGAATCGGGAAGACAAGGATGGCACAAATGGTAGACAAAG 292
||||| |||||||| ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 275 TATTGCTGGTTGGCGAAGCTGGGATCGGGAAGACAAGGATGGCACAAATGGTTGACAAAG 334
Query 293 AAG-CTGCTAAGGACG-ACTTGTGCTACCAGACTCTCTGGTTGCATCTCAACAGGAAGTT 350
||| || ||||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 335 AAGCCT-CTAAGGATGTTCTT-TGCTACCAGACTCTCTGGTTGCATCTCAACAGGAAGTT 392
Query 351 TAAAGTCAACGACAAGTATGA-CAAGGAGAAGAAGTTTGAAGATGAATGGTCTCTTTATG 409
||||||||||||||| ||| | ||||||||||||||||||||| ||||||||||||||||
Sbjct 393 TAAAGTCAACGACAACTAT-ATCAAGGAGAAGAAGTTTGAAGACGAATGGTCTCTTTATG 451
Query 410 AGAACATAGCTTCACAACTATCTTTATATTCTGATTTtgaagagactgaagtcggtgaaa 469
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 452 AGAACATAGCTTCACAGCTATCTTTATACTCTGATTTTGAAGAGACTGAAGTCGGTGAAA 511
Query 470 gagatgaagatgaggaggaagagaagaaggttgaagaTTTGCTTAAGGATTTGAAGGCTA 529
|||||||||||||||| || ||||||||||||||||||||||| |||||||||||| | |
Sbjct 512 GAGATGAAGATGAGGAAGAGGAGAAGAAGGTTGAAGATTTGCTCAAGGATTTGAAGCCCA 571
Query 530 AGATTGAGAAATATCTCTTggaaaagaagaaagccgttgaggaaaaattggaggaggaca 589
|||||||||| |||||||||||||||||| ||||||| | | ||||||||||||| ||||
Sbjct 572 AGATTGAGAAGTATCTCTTGGAAAAGAAGGAAGCCGTCGTGAAAAAATTGGAGGATGACA 631
Query 590 agaagaagaagttgaaggaagCCGCAGATAAATTGGAGGCTGAGAGAAAACTGGTGGATC 649
||||||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||||
Sbjct 632 AGAAGAAGAAGGAGAAGGAAGCCGCAGAGAAACTGGAGGCTGAGAAAAAACTGGTGGATC 691
Query 650 C-GCATGCGAAGAAAGCTAAAGATCC-T-GAGAAGAAGAATCCAACGGATGCCGGGAAGG 706
| || |||||| ||||| ||||| || | || || ||||||||||| ||||||| ||||
Sbjct 692 CGGC-TGCGAAAAAAGCAAAAGA-CCATGGA-AACAAGAATCCAACCGATGCCGCAAAGG 748
Query 707 AGAAAACGACTGAAGTAGTAGCCGGA-G-GA-G----A--T---ACATCATCTGAAAGAA 754
||||||||||| |||||||||||||| | || | | | ||||||||||||||||
Sbjct 749 AGAAAACGACTCAAGTAGTAGCCGGAGGAGAGGATAAAGCTCAGACATCATCTGAAAGAA 808
Query 755 AGCCGTATCTTCTTTTAATTCTTGACGATGAAGGAATGACCAGTGAGTACGAGGTGATGG 814
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 AGCCGTATCTTCTTTTGATTCTTGACGATGAAGGAATGACCAGTGAGTACGAGGTGATGG 868
Query 815 TGCATTTAGGCCTTGAGGATTTTCTGAAAGATCACACACCTCGAAAAATCCTTATTACAA 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 TGCATTTAGGCCTTGAGGATTTTCTGAAAGATCACACACCTCGAAAAATCCTTATTACAA 928
Query 875 GAAGACAGGAAAATGAGGAGGATACAAAATCTGGTGAG-AAGATTGAGGGGGA---AGAT 930
||||||| |||| |||||||| |||||||||||||||| | | ||||||||| | ||
Sbjct 929 GAAGACAAGAAACTGAGGAGGCTACAAAATCTGGTGAGCATG-CTGAGGGGGAGGCAAAT 987
Query 931 GATTCGCATTCCGCGGAAAAGAAAGATGAAACCGATGGTGAAGACGAAAATAAATCACGT 990
|||||||| |||| |||||||||||| || || |||||||||||||||| || ||||
Sbjct 988 GATTCGCAATCCGGGGAAAAGAAAGAGGACACAGATGGTGAAGACGAAATTAGATCA--- 1044
Query 991 GACACCGACACAATCAATGAGGAGGTACCTGAGTCTCATGCCCAGATCAAGGCAGAGGAG 1050
| | | || | |||||| |||||||||||| |||| | |||| ||||||||
Sbjct 1045 G---CTG-----AT--A--AGGAGGAACCTGAGTCTCAAGCCCGGGTCAAAACAGAGGAG 1092
Query 1051 AAAC-------CG--G---CTCCTACCATAGATGACTTATGGGGTG-GCACAAACACTTA 1097
|||| | | ||||||||||||||||||||||||| | |||||||||||||
Sbjct 1093 AAACATGAAAAAGTTGTACCTCCTACCATAGATGACTTATGGGG-GAGCACAAACACTTA 1151
Query 1098 TGGCGAAATTACGTTCAATAACACAAACGAGTCGCAAGCTTTACTTGAATCCTTCAA-AG 1156
||| |||||||||||| | | |||||| ||||| |||| |||||||||||| |||||
Sbjct 1152 TGGTGAAATTACGTTCCAGACCACAAATGAGTCACAAGATTTACTTGAATCATTCAACCT 1211
Query 1157 ACAAGGAGGCGGAGGATTTATTTA----GATCCA---TTTTCAAGGGTATGCCAGATTTC 1209
| |||||||| |||| |||||||| | |||| ||||||||| ||||||| ||||
Sbjct 1212 A-AAGGAGGCAGAGGCTTTATTTACTTCG-TCCATGTTTTTCAAGGATATGCCAAATTTT 1269
Query 1210 TTCGTTGTCCCCGTTGATGGGACTGATGACATAA-TG-T--CCCA-AGTGTTGAAAAAGA 1264
||| ||| ||||||| |||||||||||| | || || | ||| | || |||||||||
Sbjct 1270 TTCTTTGACCCCGTTCCTGGGACTGATGAGA-AACTGTTAAACCACA-TGCTGAAAAAGA 1327
Query 1265 GCAAGAATTTGCCAGCTGCAATCGTTGTGCTAGGCAAGTCCCTAGAGTACACTGTTAAGA 1324
|||||| |||||||||||||||| ||||| | ||||||||||||||||||||| ||||
Sbjct 1328 GCAAGAGTTTGCCAGCTGCAATCAACGTGCTCGCCAAGTCCCTAGAGTACACTGTCAAGA 1387
Query 1325 GCAAGTCCTATGAGCTTAATAAGGA-AACAGAAGAGAAGTTACTAAAAGAAAAGATAGAA 1383
||||||||||| ||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 1388 GCAAGTCCTATAAGCTTAATAAGGACGA-AGAAGAGAGGTTACTAAAAGAAAAGATAGAA 1446
Query 1384 ATGGTTCTCTCGGCTGAGCGGGATGTTCCGTCCAATCCA-GAATCTAGTTCTGAGAGCCC 1442
|||||||||||||||||||||| | ||| ||| | ||| ||||||||||||||||||||
Sbjct 1447 ATGGTTCTCTCGGCTGAGCGGGGTAATCCATCCGA-CCAGGAATCTAGTTCTGAGAGCCC 1505
Query 1443 TAAGAAAGCAAGTGGAGAAAATCCAATCCTGCTTCTTGCATACAAGCTGTTCAAAACCGA 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 TAAGAAAGCAAGTGGAGAAAATCCAATCCTGCTTCTTGCATACAAGCTGTTCAAAACCGA 1565
Query 1503 TGGTCCATTGAAGGATACAATATTGGATTGTTTTTGGCATAGCTTGGACTTCTTTGAGCA 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 TGGTCCATTGAAGGATACAATATTGGATTGTTTTTGGCATAGCTTGGACTTCTTTGAGCA 1625
Query 1563 TTGTGGCTGTGTTTACTACCGTGACCTGATCACACAATGGATTCTTGAAGGCTACTTTGA 1622
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1626 TTGTGGCTGTGTTTACTACCGTGACCTGATCACACAATGGATACTTGAAGGCTACTTTGA 1685
Query 1623 TCCTGTTAGGTCTGTCGAAAAGGCGTACCAAGACGGTCATTCTATCTTCATGGAGCTTAT 1682
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1686 TCCTGTTAGGTCTGTCGAAAAGGCGTACCAGGATGGTCATTCTATCTTCATGGAGCTTAT 1745
Query 1683 AGACCGCGGAATGCTGAAGATACAAGAAAACAATGTGGTGGTACCAGAGATGGTGATGAG 1742
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1746 AGACCGCGGAATGCTGAAGATACAAGAAAACAATGTGGTAGTACCAGAGATGGCGATGAG 1805
Query 1743 AAATGTAATTGATCCTCGACGTGGTGGGCATTTAGGGAAATCTCGGCTTGGATTTTCTAG 1802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 AAATGTAATTGATCCTCGACGTGGTGGGCATTTAGGGAAATCTCGGCTTGGATTTTCTAG 1865
Query 1803 AGTCTATGGTGGTAACAAGAAAAAAGGTATAGGGAAAATCACCCAACTTGATGATATGAT 1862
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1866 AGTCTATGGTGGTAACAAGAGAAAAGGAATAGGGAAAATCACCCAACTTGATGATATGAT 1925
Query 1863 TAAAACAGTGCAAGCAAAGAAAGGAGACAAGATTACCACGATTCTGGTTAGTGGAGATCG 1922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926 TAAAACAGTGCAAGCAAAGAAAGGAGACAAGATTACCACGATTCTGGTTAGTGGAGATCG 1985
Query 1923 TCTGCGCCGTGAAACTCCTGCAAAGTTCTTTAAGAAGCTGAAAGAGCTTGAAGTACTTGG 1982
|||||| || | ||||||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct 1986 TCTGCGTCGCGTAACTCCTAAAAAGTTCTTCAAGAATCTGAAAGAGCTTGAAGTACTTGG 2045
Query 1983 TCTTTTTGAACCCACA 1998
|||||||| ||||||
Sbjct 2046 CCTTTTTGAGCCCACA 2061
Score = 2316 bits (1254), Expect = 0.0
Identities = 1551/1692 (92%), Gaps = 29/1692 (2%)
Strand=Plus/Plus
Query 2063 TTGTCCCGCCTTTTACAGATCATCTCAAACTCCTTCGGGTTCTTGTGATCAGGGACTGTG 2122
|||||||| ||||| ||||||| ||||||||||| ||||||||| | |||||||||||||
Sbjct 2072 TTGTCCCGTCTTTTTCAGATCAGCTCAAACTCCTCCGGGTTCTTATAATCAGGGACTGTG 2131
Query 2123 ACCTACTGAAAGGTATAGAGGAGCTTAAGGTTCTTACAAAGCTAAATGCTCTTGAAGTTT 2182
| || |||||| | || || |||||||||| |||||||||||||||| ||||||||||||
Sbjct 2132 ATCTCCTGAAAAGCATTGAAGAGCTTAAGGCTCTTACAAAGCTAAATACTCTTGAAGTTT 2191
Query 2183 CTGGTGCTAGCTCCCTGAAG-AAAATCTCTGACGACTTCTTTAAGTCATTTCTTGAACTC 2241
||||||||||||||||| || ||||| ||||| | |||||| ||||||||| |||||||
Sbjct 2192 CTGGTGCTAGCTCCCTG-AGCAAAATATCTGAAAAATTCTTTGAGTCATTTCCTGAACTC 2250
Query 2242 CGAAGTCTTCACCTCTCTGGGCTTAAGATCAAGTCTTCCCCTCCCAGTATTTCTGACCTG 2301
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 2251 CGAAGTCTTCACCTCTCTGGGCTTAAGATCGAGTCTTCCCCTCCCAGTATTTCTGGCCTG 2310
Query 2302 AAGGAACTTCACTGTCTCATCATCAAGGACTGCCCTTTATTGGAAGATTTGCCAAACATA 2361
|||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 2311 AAGGAACTTCACTGTCTCATCATCAAAGACTGCCCTTTATTGCAAGATCTGCCAAACATA 2370
Query 2362 CAGGAACTACTAAATCTCGAGGTTGTTGATATTTCTGGTGCTCGTGGGCTTCGAACTTGT 2421
|| |||||| ||||||| |||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2371 CAAGAACTAGTAAATCTTGAGGTTGTTGATGTTTCTGGTGCTAGTGGGCTTCGAACTTGT 2430
Query 2422 TTCGACAACGCAAAAGATGGCAAGaaaaacaaaagcaaaaacaaaaaCTTTTATCTTCTT 2481
|||||||||||| | | || |||||||||||| |||||||||||||||||||||||||||
Sbjct 2431 TTCGACAACGCAGATGGTGCCAAGAAAAACAAGAGCAAAAACAAAAACTTTTATCTTCTT 2490
Query 2482 ACAAAACTTCAGCTTCTTGACTTCTCCGGGAGCCAAATAGAGCGACTGCCAATATTCCAG 2541
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2491 ACAAAACTTCAGCATCTTGACTTCTCGGGGAGCCAAATAGAGCGACTGCCAATATTCCAG 2550
Query 2542 GACTCTGCGGTGGCCGCCAAGCTTCACTCCTTGACTCGGCTCTTGTTGCGCAACTGTAGC 2601
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2551 GATTCTGCGGTGGCCGCCAAGCTTCACTCCTTGACTCGGCTCTTGTTGCGCAACTGTAGC 2610
Query 2602 AAATTGAGAAGGTTGCCTAGTTTGAAGCCCTTGTCAGGACTCCAAATTCTTGATCTCTCT 2661
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2611 AAATTGAGAAGGTTGCCTAGTTTGAAGCCCTTGTCAGGACTTCAAATTCTTGATCTTTCT 2670
Query 2662 GGCACTACCAGCTTAGTGGAAATGCTTGAAGTGTGCTTCGAGGATAAGCATGAACTCAAA 2721
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2671 GGCACTACGAGCTTAGTGGAAATGCTTGAAGTGTGCTTCGAGGATAAGCTTGAACTCAAA 2730
Query 2722 ACTCTTGATCTCTCGGGAACTAATCTTAGCGAGTTGGCTACCACCATCGAGGAGCTGTCC 2781
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2731 ACTCTTAATCTCTCGGGAACTAATCTTAGCGAGTTGGCTACCACCATCGAGGACCTGTCC 2790
Query 2782 AGTCTCAACGAACTTCTCCTACGTGATTGCATCAACCTAGATGCTATCCCAAACATCCAG 2841
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 2791 AGTCTCAACGAACTCCTCCTACGTGATTGCATCAACCTAGATGCCATCCCAAACATCGAG 2850
Query 2842 AAACTCGAAAATCTCGAAGTCATTGATGTTTCCGGCAGTGCCAAGCTGGCGAAGATTGAG 2901
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2851 AAACTAGAAAATCTCGAAGTCATTGATGTTTCCGGCAGTGCCAAGCTGGCAAAGATTGAG 2910
Query 2902 GGATCATTTGAGAATATGTATTACCTACGTGAAGTGAATCTCTTTGGAACCAAAGTGGAG 2961
|||||||||||||| |||| ||||||||||| |||| |||| | ||||||| ||||||||
Sbjct 2911 GGATCATTTGAGAAAATGTTTTACCTACGTGTAGTGGATCTGTCTGGAACCCAAGTGGAG 2970
Query 2962 ACACCAGAGTTGCCAAATGAGACCAAAATCCATTGTGTGAAGCGTTTTACCCGGGCAGAT 3021
||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||
Sbjct 2971 ACACCAGAGTTGCCAGCGGATACCAAAATCCATTGTCTGAAGCGTTTTACTCGGGCAGAT 3030
Query 3022 GGAAAGTGTTTTAAAGGTGACACATGGAGCA-AAATAAAGGAAGACATTGAACGTGATAG 3080
||||| |||||| || ||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 3031 GGAAAATGTTTTGAACGTGACACATGGAG-AGAAATAAAGGAAGACATTGAACGTGATAG 3089
Query 3081 GTCTGAGAATGCCAGCTCCTCTGATGCAGTTGTTGA-ATCCCAAGAGATT-CTAGAAGA- 3137
|||||||||||||||||||||||||||||||||| | ||| ||||| || | |||| |
Sbjct 3090 GTCTGAGAATGCCAGCTCCTCTGATGCAGTTGTT-ATATCTCAAGAAATCAC-AGAAAAG 3147
Query 3138 AA-CA-G--GA-----GAGA--TTCAATCAGA-TGAACCTCGCGCCAGTGATCGTACTGA 3185
|| | | || |||| || |||| || || |||||||||||||||| |||| ||
Sbjct 3148 AAGCCTGTAGAAATAAGAGAGGTTGAATC-GAATGCACCTCGCGCCAGTGATTGTACCGA 3206
Query 3186 GAAGGGAGATGTCAGCAAGGAACGTCTTCTCAAAGTCCCCAAAGAGAGGGCTCTATATAA 3245
||| | |||||||| ||||||||||||||| |||||||||| ||| |||||||||||| |
Sbjct 3207 GAAAGTAGATGTCAACAAGGAACGTCTTCTTAAAGTCCCCATAGATAGGGCTCTATATCA 3266
Query 3246 GAAGACACTATCATCACTTGTTGATTCCGAAATTCCACAAGAAG---TCTTGGAGATCAA 3302
|||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 3267 GAAGGCACTAACATCACTTGTTGATTCCAAAATTCCACAAGAAGAAGTCTTGGAGATCAA 3326
Query 3303 TGAAACTAATGAGCTAGATAAGGACGCACTAGCTAATGCTGAGTTTGTGTCTTTTGTGGA 3362
|||||||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 3327 TGAAACTAATAAGCTAGATGAGGAAGCACTAGCTAGTGCTGAGTTTGTGTCTTTTGTGGA 3386
Query 3363 CTGTACTCCTGAAAGGCTCACATCTATCTTTAACGA-GACCAAATCAGTGAAGGGTTGCT 3421
|||||||||||||||| ||| |||||||||| | || | |||||| |||||||||||||
Sbjct 3387 CTGTACTCCTGAAAGGGTCAAATCTATCTTTGA-GAAGGCCAAATTGGTGAAGGGTTGCT 3445
Query 3422 GGCTAAGGATGTGCTTTGACATAAAAAATCTTTTCGCTGGTGTGGATGAGGA-ACACTTG 3480
|||||||||||||||||||||||||| | | ||||| ||||||||||||||| | |||||
Sbjct 3446 GGCTAAGGATGTGCTTTGACATAAAAGACCCTTTCGATGGTGTGGATGAGGAGA-ACTTG 3504
Query 3481 AAGTCACTGGAGACTTTGTCGATTACAAACCTTCTATCGTTGGAGACTATAAGCTCTGTC 3540
|| |||||||||||||| ||||||||||||||||| || |||||||||||||||| | |
Sbjct 3505 AAATCACTGGAGACTTTATCGATTACAAACCTTCTCTCATTGGAGACTATAAGCTTTATT 3564
Query 3541 GGTAAGTTGGAGAATCTGAAGAACCTAAGCTTAGATTGCTGCCCGAAAATCAAAACGATT 3600
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3565 GCTAAGTTAGAGAATCTGAAGAACCTAAGCTTAGATTGCTGCCCGAAAATCAAAACGATT 3624
Query 3601 TTCCCGGAGATGCCTGCCAGCCTACCAGTCCTGAATTTAAAGCATTGTGAGAATCTGGAG 3660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3625 TTCCCGGAGATGCCTGCCAGCCTACCAGTCCTGAATTTAAAGCATTGTGAGAACCTGGAG 3684
Query 3661 AAAGTTGTTGTAGGAGTTGAAGTGTCAACTCACACTAATCTGAATTTGGAAGTGGAGAAT 3720
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 3685 AAAGTTGTTGTAGGAGTTGAAGTGTCAACTCACACTAATCTGGATTTGAAAGTGGAGAAT 3744
Query 3721 TGCCCAAAGTTC 3732
|| ||||| |||
Sbjct 3745 TGTCCAAAATTC 3756
Score = 422 bits (228), Expect = 2e-116
Identities = 294/324 (91%), Gaps = 11/324 (3%)
Strand=Plus/Plus
Query 3768 GGAATACGTTATGGTTGAGCTCAGTGATGCACCACCACCACAAGAATGCTGATCATAAAA 3827
||| ||||| |||||||| | |||||||| ||| |||||||| |||||||||||||||||
Sbjct 3759 GGACTACGTAATGGTTGACCACAGTGATGTACCTCCACCACATGAATGCTGATCATAAAA 3818
Query 3828 GTA-GCTGGAGCAAGATCTACTTACACAGTACTAAACATCTGGATCGTTGCCTCT--AAT 3884
| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3819 G-AGGCTGGAGCAAGATCTACTTACACAGTACTAAACATCTGGATCGTTGCCTCTTTAAT 3877
Query 3885 CATTCTCATACTTTTTTCCTGCGTGTAGC-TGAAGCTTTGTGTGTTGAATAACAACCGG- 3942
|||| ||||||||||||||| ||||| || |||||||||| |||||||||||| |||||
Sbjct 3878 CATTTTCATACTTTTTTCCTACGTGT-GCCTGAAGCTTTGCGTGTTGAATAACGACCGGC 3936
Query 3943 ATTTGAAAC-TTCATCTTACCGgttttgttttttactgtttcatgtttttgtttctcttt 4001
||| ||||| || ||||| | |||||| ||||| |||||||||||||| ||||||| |||
Sbjct 3937 ATT-GAAACATT-ATCTTGCGGGTTTTATTTTT-ACTGTTTCATGTTTCTGTTTCTGTTT 3993
Query 4002 taagatattttCTGCTGTGAAATCCCTGGCATGGTGTTCTGTTCTTGTCTGGGTGAATAA 4061
|||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct 3994 TAAGATATTTTCTGCTGTAAAATCCCAGGCATAGTGTTCTGTTCTTGTCTGGGTGAATAA 4053
Query 4062 GACCATTGTTTTGATTGTTTTTCT 4085
||||||||||||||||||||||||
Sbjct 4054 GACCATTGTTTTGATTGTTTTTCT 4077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 204430292725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5