BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494461 Length=2090 Score E Sequences producing significant alignments: (Bits) Value AT5G45190.2 | Symbols: | Cyclin family protein | chr5:18277620... 2625 0.0 AT4G19600.1 | Symbols: CYCT1;4 | Cyclin family protein | chr4:1... 1110 0.0 > AT5G45190.2 | Symbols: | Cyclin family protein | chr5:18277620-18281874 REVERSE LENGTH=2150 Length=2150 Score = 2625 bits (1421), Expect = 0.0 Identities = 1617/1708 (95%), Gaps = 28/1708 (2%) Strand=Plus/Plus Query 397 GTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCACATGCA 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 457 GTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCACATGCA 516 Query 457 AAGAATGACAGAAGGACTATTGCAACTGTATGCATGTTCCTTGCTGGAAAGGTTGAGGAA 516 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 517 AAGAATGACAGAAGGACCATTGCAACTGTATGCATGTTCCTTGCTGGAAAGGTTGAGGAA 576 Query 517 ACTCCACGGCCCTTGAAAGACGTTATTTTTGTCTCCTATGAGATAATAAACAAGAAGGAT 576 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 577 ACTCCACGGCCCTTGAAAGATGTTATTTTTGTCTCCTATGAGATTATAAACAAGAAGGAT 636 Query 577 CCTGGTGCTTCACAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAGCTTATA 636 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 637 CCTGGTGCTTCCCAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAGCTTATA 696 Query 637 TTAAACGGAGAAAAAATTGTTCTTTCTACTTTAGGCTTTGACCTCAATGTTCATCATCCT 696 |||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| Sbjct 697 TTAAACGGAGAAAAAATTGTTCTTTCCACTCTAGGCTTTGACCTCAATGTTTATCATCCT 756 Query 697 TATAAACCCCTTGTAGAAGCTATAAAGAAATTTAAGGTTGCACAGAATGCTCTCGCCCAA 756 ||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||| Sbjct 757 TATAAACCCCTGGTAGAAGCAATAAAGAAATTTAAGGTTGCACAGAATGCACTTGCCCAA 816 Query 757 GTTGCATGGAATTTTGTTAATGATGGTCTTCGGACATCTCTCTGCCTGCAATTTAAGCCT 816 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 817 GTTGCATGGAATTTTGTTAATGATGGTCTACGGACATCTCTCTGCCTGCAATTTAAGCCT 876 Query 817 CATCATATTGCGGCTGGTGCAATATTTCTTGCGGCCAAGTTCCTTAAAGTGAAGTTACCA 876 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 877 CATCATATTGCGGCTGGTGCAATATTTCTTGCGGCCAAGTTCCTTAAAGTGAAGTTACCA 936 Query 877 TCAGATGGGGAGAAGGTTTGGTGGCAAGAATTTGACGTCACACCCCGACAATTGGAGGAT 936 |||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||| Sbjct 937 TCAGATGGAGAGAAGGTTTGGTGGCAAGAATTTGATGTCACACCCAGACAACTGGAGGAT 996 Query 937 GTTAGCAACCAAATGCTTGAGCTTTATGAGCAAAACCGTGTCCCTGCATCTCAAGGAAGC 996 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 997 GTTAGCAACCAAATGCTTGAGCTTTATGAGCAAAATCGTGTCCCTGCATCTCAAGGAAGT 1056 Query 997 GAAGTCGAAAGTAGTGTAGGTGGAGGGTCAGTTCAGCGGCCAGGCTCCAGAAATGCAGTT 1056 |||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||| Sbjct 1057 GAAGTCGAGAGTAGTGTAGGTGGAGGGTCAGCTCAGCGACCAGGCTCCAGAAATGCGGTT 1116 Query 1057 TCAACCGATGAGCATGTTGGTTCTAGGCAAAC---ATCAGTACGTTCAACCCATGAA-AA 1112 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 1117 TCAACCGATGAGCATGTTGGTTCTAGGCAAACGTCATCAGTACGTTCAACCCATGAACAA 1176 Query 1113 TTCAAATTCTGATAATCAT-----T-CATCGAAAGGAGTATTGAATCAGAACAATGAAAA 1166 | ||||||||||||||||| | |||| |||||||||||||||||||||||||| || Sbjct 1177 T-CAAATTCTGATAATCATGGGGGTTCATCCAAAGGAGTATTGAATCAGAACAATGAGAA 1235 Query 1167 TGGGGCTGGTGAGGCAGCTAATGTCAGTGTCGATCACAAAGAGGAGATAGAGAGAGAAAC 1226 ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1236 TGGGGGTGGTGAGGCAGCTAATGTCAGTGTCGATAACAAAGAGGAGATAGAGAGAGAAAC 1295 Query 1227 AAAAGAAAGCAGCCTACATCCTGAAAGTCATCCACCCCATAAGGACAATGTAAGAGAAGC 1286 |||||||||||||||||||| |||||| |||||| |||||||||||||||| |||||||| Sbjct 1296 AAAAGAAAGCAGCCTACATCTTGAAAGCCATCCAGCCCATAAGGACAATGTGAGAGAAGC 1355 Query 1287 CCCCCATAACTCTAGACCTTTAGTTGAGGGACCTGCGAAAGACAACTCAGAAAGAGAGGG 1346 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1356 CCCCCATAACTCTAGACCTTTAGTTGAGGGACCTGGGAAAGACAACTCAGAAAGAGAGGG 1415 Query 1347 TGGAGAGATTCAAGATGATGGTGCTGTTCATAAATCTAGAAATGTTGATGTGGGTGATGC 1406 ||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1416 TGGAGAGCTACAAGATGATGGTGCTGTTCATAAATCTCGAAATGTTGATGTGGGTGATGC 1475 Query 1407 CCCAATCAGCCAATCGCCAAAAGACTTAAAATTGCTTCGAGATAAGGTGAAGGCTAAACG 1466 || ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1476 CCTAATCAGCCAATCGCCAAAAGATTTGAAATTGCTTCGAGATAAGGTGAAGGCTAAACG 1535 Query 1467 AGAGAAAGCTAAAAAGTTACTAGGTGAAAGGACGAGGAAAAAGGATTTGATGGATGAGGA 1526 |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1536 AGAGAAAGCTAAGAAGTTGCTAGGTGAAAGAACGAGGAAAAAGGATTTGATGGATGAGGA 1595 Query 1527 TGATTTGATTGAAAGAGAATTGGAGGATGTGGAACTAGCAGTTGAGGATGAAAAGACGAA 1586 ||||||||||||||||||| |||| |||||| ||||||| |||||||||||||||||||| Sbjct 1596 TGATTTGATTGAAAGAGAACTGGAAGATGTGCAACTAGCTGTTGAGGATGAAAAGACGAA 1655 Query 1587 GGAAAGGAAAGTAGAGAGCAGGCCAAAAGCCGAGAACTCTGATCTCATGGGTACAGAACA 1646 ||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 1656 GGAAAGGAAAGTACAGAGCAGGCCAAAGGCGGAGAACTCTGATCTCATGGGTACAGAACA 1715 Query 1647 TGGTGAGATTCTAGATGTTAAAGGAGAAGTCAAAAATACAGAGGAAGGCGAAATGGTAAA 1706 |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1716 TGGTGAGATTTTAGATGTTAAAGGAGAAGTCAAAAATACAGAGGAAGGTGAAATGGTAAA 1775 Query 1707 CGA---TGTGTCCCCAATGATGCATAGCAGAAAGAGAAAAATGGGAAGCCCTCCTGAAAA 1763 | | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1776 CAACAATGTGTCCCCGATGATGCATAGCAGAAAGAGAAAAATGGGAAGCCCTCCTGAAAA 1835 Query 1764 GCAGTCAGAAGGAAAGAGACGCCACAATAGTGAGAATGGTGAAGAAGGCCACCACAACAA 1823 ||||||||||||||||||||||||||||||||||||||| |||||| |||| | | | Sbjct 1836 GCAGTCAGAAGGAAAGAGACGCCACAATAGTGAGAATGGGGAAGAAAGCCAT-A-AG-A- 1891 Query 1824 AACGAGCAGAGGTAGTAGTCATCATGGTGATAGAGAGCACAGAAGACACTCACAAGAGAA 1883 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1892 --CGAGCAGAGGTAGTAGCCATCATGGTGATAGAGAGCACAGAAGACACTCACAAGAGAA 1949 Query 1884 TAACCATTCATAAGAAGAGGTAATGATTATTAAAACTGCTACTCTTTATATTCCATCTTA 1943 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1950 TAACCATTCATAAGA-GAGGTAATGATTATTAAAACTGCTACTCTTTGTATTCCATCTAA 2008 Query 1944 -TGGTCTTTTTAATAAAGACCTTTGGCACTTTGATGCCCCAACCATGTGAACTTGACTTC 2002 |||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||| Sbjct 2009 ATGGTCTTTTTAA-AA-GACCTTTGGCACTTCGATGCCC-AACCATGTGAACTTGACTTC 2065 Query 2003 TGCATGGGTCGGTTCAGTCGTTGGAACCAATGCTCAGTGTATTTTATGTTGATTATATAT 2062 | ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 2066 TACATGGGTCGGTTCAGTCGTTGGAACCA-TGCTCTCTGTATTTTATGTTGATTATATAT 2124 Query 2063 CTCTATTTGTGGCATTTTTGCACAATCC 2090 || ||| |||||||||||||||||||| Sbjct 2125 CT--ATTCGTGGCATTTTTGCACAATCC 2150 Score = 586 bits (317), Expect = 3e-166 Identities = 345/359 (96%), Gaps = 0/359 (0%) Strand=Plus/Plus Query 29 TTCTCGCGACTCTCTAGGGTTAGGGTTTGTTGAATTTCACGCGTTATTCTTCTTCGTCTT 88 ||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| Sbjct 56 TTCTCGCGACTCTCTAGGGTTAGGGTTTGTTGATTTTCACGCGTTATTCTTCATCTTCTT 115 Query 89 CTACAATTCGCGACTAGAGAAGTTAATTCCATTGAAGGTAAGGTTGGGATAGTTTTTGGT 148 || |||||||| |||||||||| |||||||||||||| |||||| |||||| |||||||| Sbjct 116 CTGCAATTCGCAACTAGAGAAGCTAATTCCATTGAAGTTAAGGTGGGGATAATTTTTGGT 175 Query 149 TTTAGGAGATACTAATGGCTGGAGTACTAGCTGGGGAATGTTCTTACAGTGAGAGTGGAG 208 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 TTTAGAAGATACTAATGGCTGGAGTACTAGCTGGGGAATGTTCTTACAGTGAGAGTGGAG 235 Query 209 TTTCATCACACTCGAGGAATTCTCATGAAAAGCAAGAAGAGGTTTCCCGCTGGTATTTTG 268 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 236 TTTCATCACACTCAAGGAATTCCCATGAAAAGCAAGAAGAGGTTTCCCGCTGGTATTTTG 295 Query 269 GAAGAAAAGAAATAGAAGAGAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGG 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 GAAGAAAAGAAATAGAAGAGAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGG 355 Query 329 AAACGTACCTCCGCAAATCCTACTGTACGTTTTTGCAGGACTTGGGCATGAGATTGAAA 387 |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 356 AAACATACCTCCGCAAATCCTACTGTACATTTTTGCAGGACTTGGGCATGAGATTGAAA 414 > AT4G19600.1 | Symbols: CYCT1;4 | Cyclin family protein | chr4:10672765-10676735 FORWARD LENGTH=2039 Length=2039 Score = 1110 bits (601), Expect = 0.0 Identities = 789/881 (90%), Gaps = 8/881 (1%) Strand=Plus/Plus Query 155 AGATA-CTAATGGCTGGAGTACTAGCTGGGGAATGTTC-TTACAGTGAGAGTGGAGTTTC 212 ||||| | ||||||||||||| |||||||||| ||||| || | |||||||||| ||||| Sbjct 203 AGATAGC-AATGGCTGGAGTATTAGCTGGGGATTGTTCATT-CGGTGAGAGTGGTGTTTC 260 Query 213 ATCACACTCGAGGAATTCTC-ATGAAAAGCAAGAAGAGGTTTCCCGCTGGTATTTTGGAA 271 ||| |||| |||||||| | |||||||||| || |||||| |||||||||||||||||| Sbjct 261 ATCTTACTCCAGGAATTC-CAATGAAAAGCAGGACGAGGTTGCCCGCTGGTATTTTGGAA 319 Query 272 GAAAAGAAATAGAAGAGAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGGAAA 331 |||||||||| ||||| |||||||| |||||||||||| ||||||||||||||||||||| Sbjct 320 GAAAAGAAATTGAAGAAAATTCACCTTCAAGGTTGGATAGTATTGACTTAAAGAAGGAAA 379 Query 332 CGTACCTCCGCAAATCCTACTGTACGTTTTTGCAGGACTTGGGCATGAGATTGAAAGTTC 391 | ||||||||||| || |||||||| ||||||||||| || ||||||||||| ||||||| Sbjct 380 CATACCTCCGCAAGTCATACTGTACATTTTTGCAGGATTTAGGCATGAGATTAAAAGTTC 439 Query 392 CCCAGGTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCAC 451 | ||||||||||||||||| || || ||||||||||||||||||||| ||||||| |||| Sbjct 440 CTCAGGTTACAATAGCTACCGCAATTATCTTCTGTCATCGATTCTTCATTCGCCAGTCAC 499 Query 452 ATGCAAAGAATGACAGAAGGACTATTGCAACTGTATGCATGTTCCTTGCTGGAAAGGTTG 511 |||| | ||||||||||||||| ||||| || || |||||||||||||| ||||| || | Sbjct 500 ATGCTAGGAATGACAGAAGGACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGG 559 Query 512 AGGAAACTCC-ACGGCCCTTGAAAGACGTTATTTTTGTCTCCTATGAGATAATAAACAAG 570 | |||||||| | |||| || ||||| |||||| |||||||||||||||||||| ||||| Sbjct 560 AAGAAACTCCTA-GGCCGTTAAAAGATGTTATTGTTGTCTCCTATGAGATAATACACAAG 618 Query 571 AAGGATCCTGGTGCTTCACAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAG 630 ||||||||| | || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 619 AAGGATCCTACTACTGCACAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAG 678 Query 631 CTTATATTAAACGGAGAAAAAATTGTTCTTTCTACTTTAGGCTTTGACCTCAATGTTCAT 690 |||||| |||| |||||||| ||||| |||||||| | || |||||| |||||||| || Sbjct 679 CTTATACTAAATGGAGAAAAGATTGTACTTTCTACGCTGGGATTTGACTTCAATGTTTAT 738 Query 691 CATCCTTATAAACCCCTTGTAGAAGCTATAAAGAAATTTAAGGTTGCACAGAATGCTCTC 750 ||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 739 CATCCTTATAAGCCTCTTGTAGAAGCGATAAAGAAATTTAAGGTCGCACAGAATGCTCTG 798 Query 751 GCCCAAGTTGCATGGAATTTTGTTAATGATGGTCTTCGGACATCTCTCTGCCTGCAATTT 810 |||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||| Sbjct 799 GCCCAAGTTGCATGGAATTTTGTTAACGATGGTCTGCGGACGTCACTCTGCCTGCAATTT 858 Query 811 AAGCCTCATCATATTGCGGCTGGTGCAATATTTCTTGCGGCCAAGTTCCTTAAAGTGAAG 870 |||||||| || |||||||| || ||||| |||||||| || ||||||||||||||||| Sbjct 859 AAGCCTCACCACATTGCGGCGGGAGCAATTTTTCTTGCTGCGAAGTTCCTTAAAGTGAAA 918 Query 871 TTACCATCAGATGGGGAGAAGGTTTGGTGGCAAGAATTTGACGTCACACCCCGACAATTG 930 |||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||| | Sbjct 919 TTACCATCAGATGGAGAGAAGGTCTGGTGGCAAGAATTTGATGTCACACCTCGACAACTA 978 Query 931 GAGGATGTTAGCAACCAAATGCTTGAGCTTTATGAGCAAAACCGTGTCCCTGCATCTCAA 990 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 979 GAGGATGTTAGCAACCAAATGCTTGAGCTCTATGAGCAAAACCGTGTTCCTGCATCTCAA 1038 Query 991 GGAAGCGAAGTCGAAAGTAGTGTAGGTGGAGGGTCAGTTCA 1031 | |||||||||||||||||||||||||||||| |||| ||| Sbjct 1039 GTAAGCGAAGTCGAAAGTAGTGTAGGTGGAGGATCAGCTCA 1079 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 103613924880 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5