BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494519 Length=1194 Score E Sequences producing significant alignments: (Bits) Value AT5G44650.1 | Symbols: CEST, AtCEST, Y3IP1 | Encodes a nucleus-... 1777 0.0 > AT5G44650.1 | Symbols: CEST, AtCEST, Y3IP1 | Encodes a nucleus-encoded thylakoid protein, cooperates with the plastid-encoded Ycf3 protein in photosystem i assembly. Also induces tolerance to multiple environmental stresses and reduces photooxidative damage. | chr5:18013149-18015403 FORWARD LENGTH=1201 Length=1201 Score = 1777 bits (962), Expect = 0.0 Identities = 1127/1205 (94%), Gaps = 17/1205 (1%) Strand=Plus/Plus Query 1 AATAGTAATTTTCCAGTATTATCCAATTAGCAGTTGTTTC-GAGGCTATCTACATGTATC 59 |||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||| || Sbjct 3 AATAGTAATTTTATAGTATTATCCAAGTAGCAGTTG-TTCGGAGGCTATCTACATGTCTC 61 Query 60 AGCCACTCGTATTATTCTCCAATCTAGAAAAATTCAAAATTTTCAATTTCCCCTTTTTTA 119 |||||||||||||||||||||||||| |||||||| ||||||||||| | |||||| ||| Sbjct 62 AGCCACTCGTATTATTCTCCAATCTATAAAAATTC-AAATTTTCAATCT-CCCTTTCTTA 119 Query 120 AGATTAAACTTGACAAA-TTGATAATTTGAATCGTCTTCTTCCTCCGGGAATTTCAATCG 178 |||||||| || |||| |||| | |||| ||||||||||||||| || ||||||||||| Sbjct 120 AGATTAAAAGTGGCAAAGTTGAGATTTTG-ATCGTCTTCTTCCTCTGGAAATTTCAATCG 178 Query 179 AAACTATATCCTCAGAGATGCAGAATCTGTGAATTTATACAGACGAATTTTAC-tttttt 237 |||||||||| |||||||||||||||||||||| || || | |||||||| || |||||| Sbjct 179 AAACTATATCTTCAGAGATGCAGAATCTGTGAAATTGTAGAAACGAATTTCACATTTTTT 238 Query 238 tttGAAGAAATGGTGACGCAGATATTTCAGTTGCCGTTACAGTACTGTGTTTCGAGTTTT 297 |||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 239 TTTGAAGAAATGACGACGCAGATATTTCAGTTGCCGTTAAAGTACTGTGCTTCGAGTTTT 298 Query 298 TCTTCCGCCGGCAAACGGAATTACGGTGTTTCTTCGTCGCCGACTCCGGTTGTTATTTGT 357 |||||| ||||| ||||||||||||||| |||||| |||||| ||||| |||| |||||| Sbjct 299 TCTTCCACCGGCCAACGGAATTACGGTGCTTCTTCTTCGCCGTCTCCGATTGTAATTTGT 358 Query 358 AAGAGTAATGGAATTTCCGATGATCTTTGGGTTAAGCGGAGGAGGAAGAATCAGAGATTC 417 |||||||||||||||||||||| ||||||||| |||||||||| ||| |||| |||||| Sbjct 359 AAGAGTAATGGAATTTCCGATGGTCTTTGGGTGAAGCGGAGGAAGAACAATCGGAGATTT 418 Query 418 GGTAGTGTGATAGTTAAGCAGGAGAAAGGAGACGTGACGGAGATTCGAGTTCCGGTTCCG 477 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 GGTAGTTTAATAGTTAAGCAGGAGAAAGGAGACGTGACGGAGATTCGAGTTCCGGTTCCG 478 Query 478 TTAACGTTGGAGCAACAAGAGAAGGAGAAACAAAATCGAGATGATGAAG-A-A-G--A-C 531 ||||| ||||||||||||||||||||||||||||||||||||||||||| | | | | | Sbjct 479 TTAACTTTGGAGCAACAAGAGAAGGAGAAACAAAATCGAGATGATGAAGAAGATGAAATC 538 Query 532 GAAGAAGGAGAAGTAGATCCTGAAGATCTCAAATACGTCAATGAAATCAAACGGGT-ATT 590 || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 539 GATGAAGGAGATGTAGATCCTGAAGATCTCAAATACGTCAATGAAATCAAACGGGTAATT 598 Query 591 GGAGCTTCTTAGGAGGAATAGAGATATGATCTTCAGTGAGGTTAAGTTGACAATTATGAT 650 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 599 -GAGCTTCTTAGGAGGAATAGAGATATGATCTTCAGTGAGGTTAAGTTGACTATTATGAT 657 Query 651 TGAGGATCCAAGGGAAGTGGAAAGAAGGAGGCTGCTTGGAATAGAAGATGCAGATACTCC 710 |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 658 TGAGGATCCAAGGGAACTGGAAAGAAGGAGGCTTCTTGGAATAGAAGATGCAGATACTCC 717 Query 711 AAGTAGAGAGGATTTGGCTGAAGCAC-TGGAGCAGGTAAATGATGGGAAAATCCCTAAAG 769 ||| ||||| |||||||||||||| | |||| |||||||||||||||||||||||||||| Sbjct 718 AAGCAGAGATGATTTGGCTGAAGC-CTTGGAACAGGTAAATGATGGGAAAATCCCTAAAG 776 Query 770 ATCGTGCAACTCTTCGGATGCTGCATGAGGAAATGATCCGTTGGCCAAATTTAGAGGTTG 829 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 ATCGTGCAACTCTTCGGATGCTGCATGAGGAAATGATCCGTTGGCCAAATTTAGAGGTTG 836 Query 830 AGGTTTCAAAGAAGCAACGAGGAAAATCAATGTACGCTAAATCCACAGACACCGGAATAG 889 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 837 AGGTTTCAAAGAAGCAACGAGGAAAGTCAATGTACGCTAAATCCACAGACACTGGAATAG 896 Query 890 ATCCAAAAGAAGCAGCCAAGAGACTCAACATAGAATGGGATTCAGCTGCTGCAATTGAAG 949 ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 897 ATCCAAAAGAAGCAGCCAAGAGACTCAACGTCGAATGGGATTCAGCTGCTGCAATTGAAG 956 Query 950 AAGCCGATGTCGATGATGAACAAGGAGTAGTAACCAAAGTCGCGGGCTATGGAGCATTGT 1009 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 957 AAGTCGATGTCGATGATGAACAAGGAGTAGTAACCAAAGTCGCGGGCTATGGAGCGTTGT 1016 Query 1010 ACTTTGTCTCGGCTTTACCAGTTATCATCGGTATCTCTGTTGTATTAATCTTGTTTTACA 1069 |||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 1017 ACTTCGTCTCAGCTTTACCAGTTATCATTGGTATCTCTGTTGTATTAATTTTGTTTTACA 1076 Query 1070 ATTCCCTTCAGTAGAGTCAAATCCATTTAGTTGTTATACACACCAGCACCAATGACCCAT 1129 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1077 ATTCCCTACAGTAGAGTCAAATCCATTTAGTTGTTATACACACCACCACCAATGACCCAT 1136 Query 1130 CATTGATGTTTTGTAACTTAAGAACATGAAATGAATTTTTCAATTATTTAATCATCTTCT 1189 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1137 CATTGATGTTTTGTAACTTAAGAACATGAAATGAGTTTTTCAATTATTTAATCATCTTCT 1196 Query 1190 TCCTT 1194 ||||| Sbjct 1197 TCCTT 1201 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58634236560 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5