BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494555
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44316.1 | Symbols: | Stabilizer of iron transporter SufD s... 1759 0.0
AT4G04770.1 | Symbols: ATABC1, LAF6, ATNAP1, ABC1 | ATP binding... 854 0.0
> AT5G44316.1 | Symbols: | Stabilizer of iron transporter SufD
superfamily protein | chr5:17852911-17854521 FORWARD LENGTH=1413
Length=1413
Score = 1759 bits (952), Expect = 0.0
Identities = 1270/1418 (90%), Gaps = 44/1418 (3%)
Strand=Plus/Plus
Query 1 ATGGCATCTCTTTTCGCAAACGGTATCTCCAGATTTTCTCCACAAACCACTTCCGATTCT 60
||||| ||||||||||||| |||| |||||| ||||||||||||| |||||||||||| |
Sbjct 1 ATGGCGTCTCTTTTCGCAATCGGTTTCTCCAAATTTTCTCCACAACCCACTTCCGATTAT 60
Query 61 TCCAAAGTACCAAAAGAGTTTCATCCAAAACCCGAATCCTTGAAATTCCCATCCCCCAAA 120
|||||| ||| ||||| |||||||||||||||| | ||||||||||| | || | ||||
Sbjct 61 TCCAAATTACTAAAAGTGTTTCATCCAAAACCCTATTCCTTGAAATTTCTATTTCTCAAA 120
Query 121 ACCCTAAATCGGACTAGGGTTTTCAAAGTCAGAGCCAAAGATGGAACTGAATCC-TCTGA 179
|||||||||| |||||| ||||||||||||||||||| |||||||| ||| || |||||
Sbjct 121 ACCCTAAATCCTACTAGGTTTTTCAAAGTCAGAGCCAATGATGGAACCGAA-CCATCTGA 179
Query 180 TAAACTTCAACAGTATTTCAAGAATCAAGATTACGTTAAGAAATACGGATTCAC-TGAAC 238
||||||||||||||||||| ||||||||||||||| |||||||||||||||| | ||||
Sbjct 180 TAAACTTCAACAGTATTTCCAGAATCAAGATTACGATAAGAAATACGGATTC-CTTGAAA 238
Query 239 ATATCGATTCGC-TCACAATCCCTAACGGTTTATCTGAAGAAACGATTCGCTTGATATCG 297
| |||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 ACATCGATTC-CTTCACAATCCCTAAAGGTTTATCTGAAGAAACGATTCGCTTGATATCG 297
Query 298 AAATTGAAAAAGGAACCAACTTGGATTCTTGAGTTTAGGCTCAAAGCTTATGCTAAGTTT 357
|| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 298 AAGTTGAAAAAGGAACCAGCTTGGATTCTTGAGTATAGGCTCAAAGCTTATGCTAAGTTT 357
Query 358 CTGAAATTAGAAGAACCTAAATGGTCAGATAATAGGTATCCTTTGCTTAATCTCCAAGAT 417
|| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 358 CTAAAATTAGAAGAACCTAAATGGTCAGATAATAGGTACCCTTTGCTTGATCTCCAAGAT 417
Query 418 ATGTGTTATTACTCTGTTCCT-AAAA-AGA--AAC----CA-A---C---T-T---TG-- 456
||||||| |||||||| |||| |||| | | ||| | | | | | ||
Sbjct 418 ATGTGTTTTTACTCTGCTCCTAAAAAGAAACCAACTTTGAATAGTTCAGATATAGCTGAT 477
Query 457 G-A--T-A--ATCCTAAGGTTCTTGA-GATATTTGATAGATTAGATGTTCCTATAAC--A 507
| | | | |||||||| ||||||| || |||||||||||||||||||||| |||| |
Sbjct 478 GAAGCTGATGATCCTAAGCTTCTTGAGGA-ATTTGATAGATTAGATGTTCCTTTAACAAA 536
Query 508 -AAGAAGAAATGTTCTCCTAAGGTTGCGGTTGATGCGGTTT-TCAATAGTGAATCTATAG 565
|||||||||||||| ||||| ||||||||||||||||||| | ||||||||||| ||||
Sbjct 537 GAAGAAGAAATGTTCACCTAAAGTTGCGGTTGATGCGGTTTAT-AATAGTGAATCGATAG 595
Query 566 CTATCACTAATAAGGAGCCTCTAGAGAAGTCAGGTGTGATCTTTTGTTCGATATCCGAAG 625
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 596 CTATTACTAATAAGGAGCCTCTAGAGAAGTCAGGTGTGATCTTCTGTTCGATATCCGAAG 655
Query 626 CTATTAGGAAGTATCCGGCTTTGATCAAGAAGTATTTAGGAAGAGTTGTGCCTAGTGATG 685
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CTATAAGGAAGTATCCGGATTTGATCAAGAAGTATTTAGGAAGAGTTGTGCCTAGTGATG 715
Query 686 ATAATTACTACGCGGCTTTGAATTCTGCGGTTTTCAGCGATGGGTCTTTCTGTTATGTAC 745
|||| |||||||||||||||||| | ||||||||||||||||| || ||||||||| |||
Sbjct 716 ATAACTACTACGCGGCTTTGAATACCGCGGTTTTCAGCGATGGATCGTTCTGTTATATAC 775
Query 746 CAAAAAACACGAGATGTCTGATGCCTGTTTCGAGTTATTTCCGGATGAACGCGAT-GAAG 804
| |||||||| ||||||| ||||||| ||||||||||||| |||||||| | || |||
Sbjct 776 CGAAAAACACTAGATGTCCGATGCCTCTTTCGAGTTATTTTCGGATGAATTCTATTGAAA 835
Query 805 AGTACTGGTCAATTTGAAAGGACTTTGATTGTTGCTGAGGAAGGGAGTTATGTTGAGTAT 864
| |||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||
Sbjct 836 AC-ACTGGTCAGTTTGAAAGAACTTTGATTGTTGCTGAGGAAGGTAGTTTTGTTGAGTAT 894
Query 865 TCAGAAGGATGCACTGCTATATCTCATGACAAGAATCAGCTTCACGCTGCGGTGGTTGAG 924
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 895 TCAGAAGGATGCACTGCTATTTCTCATGACAAGAATCAGCTTCACGCTGCTGTTGTTGAG 954
Query 925 CTCTATTGCGCGGAAGGAGCAGAGATTAAGTACTCGACGGGTGGTCTTTGCGCTGGGGAT 984
||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||| |||
Sbjct 955 CTCTATTGCGCTGAAGGAGCGGAGATTAAGTACTCGACGCGTGGTCTCTGCGCTGGTGAT 1014
Query 985 CGCTCCAAGATATCATGGACTCAGGTTGAGACGGGGT-CTGCAATAACTTGGAAGTATCC 1043
|| |||||||| ||||||||||| ||||||| |||| | || |||||||||||||||||
Sbjct 1015 CGTTCCAAGATCTCATGGACTCAAGTTGAGAAAGGGTTC-GCGATAACTTGGAAGTATCC 1073
Query 1044 AAGCGTGGTTTTAGAAGGCGATGATTCAGTTGGCGAAGCCGAGAATGCTAAAAATACATC 1103
|||||||||||||||||| |||||||| ||||| ||||| ||||| |||| |||||| ||
Sbjct 1074 AAGCGTGGTTTTAGAAGGAGATGATTCCGTTGGAGAAGCTGAGAACGCTAGAAATACTTC 1133
Query 1104 GACTTGCGACTCAATGCTTATCGGTGACAATGCAGCCGCTAATACCTATCCTTACATACA 1163
|||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1134 GACTTGTGACTCGATGCTTATTGGTGACAATGCAGCCGCTAATACATATCCTTACATACA 1193
Query 1164 GGTAAAGAATCCATCGGCGAGAGTGGAGCACGAAGCAAGTACTTCAAAGATTGGAGAAGA 1223
|||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 1194 GGTAAAGAATCCATCGGCGAGAATAGAGCATGAAGCAAGTACTTCAAAGATTGGAGAAGA 1253
Query 1224 TCAGATTTTCTATTTCCAGCAGAGAGGAATAGATCACGAGAGAGCATTAGCGGCAATGAT 1283
||||||||||||||| || |||||||| || ||||| |||||||||||||||||||||||
Sbjct 1254 TCAGATTTTCTATTTTCAACAGAGAGGTATCGATCATGAGAGAGCATTAGCGGCAATGAT 1313
Query 1284 CTCTGGATTCTGCAGAGATGTCTTCAACAAGTTACCTGATGAATTTGGAGCTGAAGTTAA 1343
||||||||| ||||||||||| ||||||||||| ||| ||||||||||||| ||||||||
Sbjct 1314 CTCTGGATTTTGCAGAGATGTTTTCAACAAGTTGCCTAATGAATTTGGAGCCGAAGTTAA 1373
Query 1344 TCAGCTTTTGAGCATTAAGCTTGAAGGATCAGTGGGTT 1381
|||||||||||||||||||||||||||||||||||||
Sbjct 1374 CCAGCTTTTGAGCATTAAGCTTGAAGGATCAGTGGGTT 1411
> AT4G04770.1 | Symbols: ATABC1, LAF6, ATNAP1, ABC1 | ATP binding
cassette protein 1 | chr4:2427799-2429850 REVERSE LENGTH=1938
Length=1938
Score = 854 bits (462), Expect = 0.0
Identities = 703/814 (86%), Gaps = 38/814 (5%)
Strand=Plus/Plus
Query 176 CTGATAAACTTCAACAGTATTT-CAAGAATCAAGATTACGTTAAGAAATACGGATTCACT 234
|||||||||||||||||||||| ||| |||| ||||||| |||||| ||||||||| |
Sbjct 298 CTGATAAACTTCAACAGTATTTCCAA-AATCTCGATTACGATAAGAAGTACGGATTCGTT 356
Query 235 GAACATATCGATTCGC-TCACAATCCCTAACGGTTTATCTGAAGAAACGATTCGCTTGAT 293
||| |||||||||| | ||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 357 GAAGATATCGATTC-CTTCACAATCCCTAAAGGTTTATCTGAAGAGACGATTCGTTTGAT 415
Query 294 ATCGAAATTGAAAAAGGAACCA-ACTTGGATTCTTGAGTTTAGGCTCAAAGCTTATGCTA 352
|||||||||||| |||||||| | |||||| |||||||||||| |||||||||||||||
Sbjct 416 TTCGAAATTGAAAGAGGAACCAGA-TTGGATGCTTGAGTTTAGGTTCAAAGCTTATGCTA 474
Query 353 AGTTTCTGAAATTAGAAGAACCTAAATGGTCAGATAATAGGTATCCTTTGCTTAATCTCC 412
||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||| |||
Sbjct 475 AGTTTCTGAAACTAGAAGAACCTAAATGGTCAGATAATAGATATCCTTCGATTAATTTCC 534
Query 413 AAGATATGTGTTATTACTCTGTTCCTAAAAAGAAACCAAC-TT---T-G----GAT--A- 460
| ||||||||||||||||||| |||||||||||||||||| || | | ||| |
Sbjct 535 AGGATATGTGTTATTACTCTGCTCCTAAAAAGAAACCAACTTTGAATAGTTTAGATGAAG 594
Query 461 ---ATCCTAAGGTTCTTGAGATATTT-GAT-AGATTAGATGTTCCTATAACAAAGAAGAA 515
||||| || |||||||| ||||| ||| || |||| ||||||| ||||| || ||||
Sbjct 595 TTGATCCTCAGCTTCTTGAG-TATTTCGATAAG-TTAGGTGTTCCTTTAACAGAGCAGAA 652
Query 516 ATGTTCT-CCTAAGGTTGCGGTTGATGCGGTTTTCAATAGTGAATCTATAGCTATC-ACT 573
| ||| | |||| || ||||||||||||||| || |||||| || || |||| | |||
Sbjct 653 ACGTT-TGGCTAATGTCGCGGTTGATGCGGTTATCGATAGTGTTTCGATTGCTA-CTACT 710
Query 574 AATAAGG-AGCCTCTAGAGAAGTCAGGTGTGATCTTTTGTTCGATATCCGAAGCTATTAG 632
|| ||| || || |||||||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 711 CAT-AGGAAGACTTTAGAGAAGTCTGGTGTTATCTTCTGTTCGATATCTGAAGCTATTAG 769
Query 633 GAAGTATCCGGCTTTGATCAAGAAGTATTTAGGAAGAGTTGTGCCTAGTGATGATAATTA 692
| ||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 770 GGAGTATCCGGATTTGATTAAGAAGTATTTAGGTAGAGTTGTGCCTAGTGATGATAATTA 829
Query 693 CTACGCGGCTTTGAATTCTGCGGTTTTCAGCGATGGGTCTTTCTGTTATGTACCAAAAAA 752
|||||| |||||||| ||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 830 CTACGCTGCTTTGAACTCTGCGGTTTTCAGCGATGGGTCTTTCTGTTATATACCGAAGAA 889
Query 753 CACGAGATGTCTGATGCCTGTTTCGAGTTATTTCCGGATGAACGCGATGAAGAGTACTGG 812
||| ||||||| ||||||| |||||| |||||||||||| ||||||||| ||| |||||
Sbjct 890 CACTAGATGTCCGATGCCTATTTCGACTTATTTCCGGATTAACGCGATG--GAG-ACTGG 946
Query 813 TCAATTTGAAAGGACTTTGATTGTTGCTGAGGAAGGGAGTTATGTTGAGTATTCAGAAGG 872
||| || || ||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 947 TCAGTTCGAGAGGACTTTGATTGTTGCTGAGGAAGGGAGTTTTGTTGAGTATTTAGAAGG 1006
Query 873 ATGCACTGCTA-TATCTCATGACAAGAATCAGCTTCACGCTGCGGTGGTTGAGCTCTATT 931
||| |||||| | ||| |||| | |||||||||||| ||||| ||||||||||||||||
Sbjct 1007 ATGTACTGCTCCT-TCTTATGATACGAATCAGCTTCATGCTGCTGTGGTTGAGCTCTATT 1065
Query 932 GCGCGGAA-GGAGCAGAGATTAAGTACTCGACGG 964
| | |||| ||||| |||||||||||||| ||||
Sbjct 1066 GTG-GGAAAGGAGCTGAGATTAAGTACTCCACGG 1098
Score = 433 bits (234), Expect = 3e-120
Identities = 280/303 (92%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 1079 AAGCCGAGAATGCTAAAAATACATCGACTTGCGACTCAATGCTTATCGGTGACAATGCAG 1138
|||| ||| |||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 1435 AAGCTGAGGGTGCTAAAAATACTTCGACTTGCGACTCAATGCTTATCGGAGACAAAGCAG 1494
Query 1139 CCGCTAATACCTATCCTTACATACAGGTAAAGAATCCATCGGCGAGAGTGGAGCACGAAG 1198
| || ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||
Sbjct 1495 CTGCAAATACCTATCCTTACATCCAGGTAAAGAATCCATCGGCGAAAGTAGAGCACGAAG 1554
Query 1199 CAAGTACTTCAAAGATTGGAGAAGATCAGATTTTCTATTTCCAGCAGAGAGGAATAGATC 1258
| ||||| || |||||||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 1555 CGAGTACCTCTAAGATTGGAGAAGATCAGCTATTCTATTTCCAGCAGAGAGGAATCGATC 1614
Query 1259 ACGAGAGAGCATTAGCGGCAATGATCTCTGGATTCTGCAGAGATGTCTTCAACAAGTTAC 1318
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1615 ACGAGAGAGCATTAGCGGCAATGATCTCTGGTTTCTGCAGAGATGTTTTCAACAAGTTAC 1674
Query 1319 CTGATGAATTTGGAGCTGAAGTTAATCAGCTTTTGAGCATTAAGCTTGAAGGATCAGTGG 1378
||||||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||||
Sbjct 1675 CTGATGAGTTTGGAGCTGAAGTTAACCAGCTTATGAGCATCAAGCTTGAAGGATCAGTGG 1734
Query 1379 GTT 1381
|||
Sbjct 1735 GTT 1737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68021738475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5