BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494585 Length=1025 Score E Sequences producing significant alignments: (Bits) Value AT5G44110.1 | Symbols: ATPOP1, ATNAP2, POP1 | P-loop containing... 1524 0.0 AT1G03905.1 | Symbols: | P-loop containing nucleoside triphosp... 785 0.0 > AT5G44110.1 | Symbols: ATPOP1, ATNAP2, POP1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:17754064-17755742 REVERSE LENGTH=1077 Length=1077 Score = 1524 bits (825), Expect = 0.0 Identities = 949/1007 (94%), Gaps = 16/1007 (2%) Strand=Plus/Plus Query 1 tctctctctctctctctGACTCTTTGATCGGAAAAAATGGCGGAGAAAAATGCGAATGCG 60 |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 35 TCTCCCTCTCTCTATCTGACTCTTTGATCGGAAAAAATGGCGGAGAAAAATGCGAGCGCG 94 Query 61 ATTGACGGTGCGATTAGGGTTAGTGGAATGCAGTTTTCTTACGATGTTCAAGATCCTATT 120 | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 95 GTGGACGGTGCAATTAGGGTTAGTGGAATGCAGTTTTCTTACGATGTTCAAGATCCTATT 154 Query 121 TTCTTCGATTTTAACCTCGATCTTCCCGCTGGATCTCGTTGCCTCTTGGTTGGTGCCAAT 180 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 155 TTCTTCGATTTTAATCTCGATCTTCCCGCTGGATCTCGTTGCCTCTTGGTTGGTGCCAAT 214 Query 181 GGATCTGGAAAAACTACATTATTGAAGATT-TTGGCTGGAAAGCATATGGTTGGAGGAAA 239 |||||||| |||||||| |||||||||||| || |||||||| ||||||||||||||||| Sbjct 215 GGATCTGGGAAAACTACGTTATTGAAGATTCTT-GCTGGAAAACATATGGTTGGAGGAAA 273 Query 240 GAATGTGGTACAAGTG-TTGGATCGCTCAGCATTTCATGATACAGAGCTTGTTTGTAGTG 298 |||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 274 GAATGTTGTACAAGTGCTT-GATCGCTCAGCATTTCATGATACAGAGCTTGTTTGTAGTG 332 Query 299 GTGATTTGTCTTACCTTGGAGGATCATGGAGTAAAACAGCTGGTTCTGCTGGTGAGATTC 358 |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| Sbjct 333 GTGATTTGTCTTACCTAGGAGGATCATGGAGTAAAACTGCTGGTTCTGCTGGTGATATTC 392 Query 359 CACTACAAGGAGACTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGGATTGATCCTG 418 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 393 CACTCCAAGGAGACTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGGATTGATCCTT 452 Query 419 TGAGAAGAGAGAAGTTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGG 478 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 453 TCAGAAGAGAGAAGTTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGG 512 Query 479 TTTCTGATGGGCAGAGACGTCGAGTGCAAATATGCATGGGTCTCTTACATCCATTCAAGG 538 |||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| Sbjct 513 TTTCTGATGGGCAGAGACGTCGAGTGCAAATATGTATGGGTCTATTACATCCGTTCAAGG 572 Query 539 TGTTACTACTGGATGAGGTTACTGTTGACCTCGATGTTGTTGCGAGGATGGATCTGTTGG 598 | |||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||| Sbjct 573 TATTACTACTGGATGAAGTTACTGTTGACCTCGACGTTGTTGCTAGGATGGATTTGTTGG 632 Query 599 AATTCTTTAAAGAAGAATGTGAACAGAGAGGAGCTACAATTGTATATGCAACTCATATTT 658 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 633 AGTTCTTTAAAGAAGAATGTGAACAGAGAGGAGCTACAATTGTATATGCAACTCATATTT 692 Query 659 TCGACGGTCTAGAGACATGGGCTAGTCATTTGGCTTACATTAATGGAGGAGAGCTGAAAC 718 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 693 TCGACGGGCTCGAGACATGGGCTAGTCATTTGGCTTACATTAATGGAGGAGAGCTGAAAC 752 Query 719 TCTCGGCCAAATTAGATGAGATCAAGGATCTCAAAACCTCTCCAAATCTGCTCTCTGTTG 778 |||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 753 TCTCGGCCAAGTTAGATGAGATCAAGGATCTCAAAACCTCACCAAATCTGCTATCTGTTG 812 Query 779 TTGAATCTTGGCTCCGGTCTGAAACCAAAGTCGAGAAGAAGACGAAGAAGAAACCTGTTG 838 ||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 813 TTGAAGCTTGGCTCCGGTCTGAAACCAAAGTTGAGAAAAAGACGAAGAAGAAACCTGTTG 872 Query 839 TTACCTCTCCATTTATGTCGTCTAGACAAATGGCATATTACCGATGAATCTACATATATG 898 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 873 TTACCTCTCCATTTATGTCGTCTAGACAAATGGCATATTACCGATGAATCT---TA-A-- 926 Query 899 CCTTTGTTTAAGAGATCAGTAAGAATAAGAGCACTTCTACTCTACATATATGCCTTTGTT 958 | || ||||| |||||||||||||||||||||||| || |||||| || ||||||||| Sbjct 927 C-TT-GTTTATGAGATCAGTAAGAATAAGAGCACTGCT--TCTACAGAT--GCCTTTGTT 980 Query 959 TTCTATGATACTTCattttttagaatccgataatttttatcatacat 1005 ||||||| ||||||||| ||||||||||||||| |||||||| |||| Sbjct 981 TTCTATGGTACTTCATTGTTTAGAATCCGATAACTTTTATCACACAT 1027 > AT1G03905.1 | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:993400-995784 FORWARD LENGTH=1141 Length=1141 Score = 785 bits (425), Expect = 0.0 Identities = 681/805 (85%), Gaps = 15/805 (2%) Strand=Plus/Plus Query 33 AAAAATGGCGGAGAAAAATGCGAATGCGATTGACGGTG-CG--ATTAGGGTTAGTGGAAT 89 |||||||||||||||| |||||| |||| || || || || ||||| ||||| || || Sbjct 75 AAAAATGGCGGAGAAAGATGCGACGGCGAGTGGCGATGACGCCATTAGAGTTAGCGGTAT 134 Query 90 GCAGTTTTCTTACGATGTTCAAGATCCTATTTTCTTCGATTTTAACCTCGATCTTCCCGC 149 ||| || | ||||| ||| | ||||| || |||||||| || |||||||||||||| || Sbjct 135 GCAATTCGCATACGAAGTTGAGGATCCAATATTCTTCGACTTCAACCTCGATCTTCCAGC 194 Query 150 TGGATCTCGTTG-CCTCTTGGTTGGTGCCAATGGATCTGGAAAAACTACATTATTGAAGA 208 ||| ||||| || | || |||||||||||||||||||||| || || || |||||||||| Sbjct 195 TGGTTCTCGCTGTCTTC-TGGTTGGTGCCAATGGATCTGGCAAGACAACCTTATTGAAGA 253 Query 209 TTTTGGCTGGAAAGCATATGGTTGGAGGAAAGAATGTGGTACAAG-TGTTGGATCGCTCA 267 || ||||||||||||||||||| ||||||||||| || ||||||| | || | ||||| Sbjct 254 TTCTGGCTGGAAAGCATATGGTGGGAGGAAAGAACGTTGTACAAGTTCTTAG-CCGCTCG 312 Query 268 GCATTT-CATGATACAGAGCTTGTTTGTAGTGGTGATTTGTCTTACCTTGGAGGATCATG 326 || ||| |||||||| | |||||||| |||||||| ||||||||||||||||||||||| Sbjct 313 GC-TTTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTACCTTGGAGGATCATG 371 Query 327 GAGTAAAACAGCTGGTTCTGCTGGTGAGATTCCACTACAAGGAGACTTCTCAGCAGAACA 386 ||||||||| | |||||| ||||| ||| |||| || || ||||| |||||||||||||| Sbjct 372 GAGTAAAACCGTTGGTTCAGCTGGAGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACA 431 Query 387 TATGATATTTGGAGTTGAAGGGATTGATCCTGTGAGAAGAGAGAAGTTGATTGATCTTCT 446 ||||||||||||||||||||| | |||||| ||||||||||| || ||||||||||||| Sbjct 432 TATGATATTTGGAGTTGAAGGAACTGATCCCGTGAGAAGAGAAAAACTGATTGATCTTCT 491 Query 447 TGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAGACGTCGAGTGCA 506 ||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| Sbjct 492 TGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGCGTGCA 551 Query 507 AATATGCATGGGTCTCTTACATCCATTCAAGGTGTTACTACTGGATGAGGTTACTGTTGA 566 ||||| ||||| |||||||||||||||||||||||| |||| |||||||| |||||||| Sbjct 552 GATATGTATGGGACTCTTACATCCATTCAAGGTGTTATTACTCGATGAGGTCACTGTTGA 611 Query 567 CCTCGATGTTGTTGCGAGGATGGATCTGTTGGAATTCTTTAAAGAAGAATGTGAACAGAG 626 ||| || || ||||| ||||||||| || |||||||||| |||||||||||||| ||||| Sbjct 612 CCTAGACGTCGTTGCAAGGATGGATTTGCTGGAATTCTTCAAAGAAGAATGTGATCAGAG 671 Query 627 AGGAGCTACAATTGTATATGCAACTCATATTTTCGACGGTCTAGAGACATGGGCTAGTCA 686 |||||||||||| || ||||||||||| || |||||||| |||||||||||||| | || Sbjct 672 AGGAGCTACAATCGTGTATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACA 731 Query 687 TTTGGCTTACATTAATGGA-GGAGAGCTGAAAC-TCTCGGCCAAATT-AGATGAGATCAA 743 |||||| |||||| | ||| || |||||||| | | | | ||| | | | || || | Sbjct 732 TTTGGCCTACATTCA-GGACGGTGAGCTGAATCGTTTAT-CGAAAATGACA-GATATTGA 788 Query 744 GGATCTCAAAACCTCTCCAAATCTGCTCTCTGTTGTTGAATCTTGGCTCCGGTCTGAAAC 803 ||| || ||||| || || || || ||||| || || |||||||||||||| ||||||| Sbjct 789 GGAGCTGAAAACTTCACCCAACCTCCTCTCCGTGGTAGAATCTTGGCTCCGTTCTGAAAT 848 Query 804 CAAAGTCGAGAAGAAGACGAAGAAG 828 |||| ||| |||||||| ||||||| Sbjct 849 CAAACTCGTGAAGAAGAAGAAGAAG 873 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50234147000 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5