BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494591
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44050.1 | Symbols: | MATE efflux family protein | chr5:177... 2281 0.0
> AT5G44050.1 | Symbols: | MATE efflux family protein | chr5:17722484-17726379
FORWARD LENGTH=1646
Length=1646
Score = 2281 bits (1235), Expect = 0.0
Identities = 1394/1472 (95%), Gaps = 5/1472 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGAGAGGGACGACGGAGCAGAAGG---TGTAGAGAAGGCGAAGATTCCTTTGTTA 57
||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||
Sbjct 1 ATGGGAGAGAGAGACGACGAAGCAGAAGGTATTTTAGAGAAGGCGAAGATTCCTTTGTTA 60
Query 58 AAGGATAAAAATGTGG-AGGAGGAGGAAGTCGGAGAAATAAAGAGAGAGATATGGATAGA 116
|||||| ||||||||| | ||||||||| |||||||||||||| |||||||||| ||||
Sbjct 61 AAGGATCAAAATGTGGCA-GAGGAGGAAAACGGAGAAATAAAGAAAGAGATATGGCTAGA 119
Query 117 GACCAAGAAGCTATGGCGTATTGTTGGACCAGCCATATTCACTAGAGTCACGACCAACTT 176
||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 120 GACGAAGAAGCTGTGGCGTATTGTCGGACCAGCTATATTCACTAGAGTCACGACCAACTT 179
Query 177 GATCTTTGTCATCACTCAGGCCTTCGCTGGCCACCTCGGCGAGCTAGAACTCGCTGCCAT 236
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 GATCTTTGTCATCACTCAGGCTTTCGCTGGCCACCTCGGCGAGCTAGAACTCGCTGCCAT 239
Query 237 CTCCATCGTCAACAACGTCATCATCGGCTTCAACTATAGCCTCTTCATTGGAATGGCGAC 296
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTCCATCGTCAACAACGTCATTATCGGCTTCAACTATAGCCTCTTCATTGGAATGGCGAC 299
Query 297 TGCGTTGGAAACGCTATGCGGTCAATCGTTTGGGGCAAAGAAGTATGAAATGTTTGGAGT 356
||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||||
Sbjct 300 TGCGTTGGAAACGCTGTGCGGTCAAGCGTTTGGAGCAAAGAAGTATGACATGTTTGGAGT 359
Query 357 GTATTTGCAACGATCTTGGATTGTTCTCTTCTTATGCTCTATCTTGCTCCTCCCAATGTA 416
||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||
Sbjct 360 GTATTTGCAGCGATCTTGGATTGTTCTTTTCTTATTCTCCATCTTGCTCCTCCCAATGTA 419
Query 417 CATCTTTGCGTCCCCGATTCTTAAGTTCATGGGCCAGCCTGACGACATCGCTGAGCTCTC 476
|||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 CATCTTTGCGACTCCGATTCTTAAGTTCATGGGCCAGCCTGACGACATCGCAGAGCTCTC 479
Query 477 CGGTATCATCGCTGTTTGGGCCATTCCTTCCCATTTCTCATTTGCTTTCTTTTTCCCTAT 536
|||||||||| ||||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct 480 CGGTATCATCTCTGTTTGGGCCATTCCTACACATTTCTCATTTGCCTTCTTTTTCCCTAT 539
Query 537 CAACCGGTTCCTCCAATGCCAGCTTAAAAACTCGGTGGTTGCAATTTCGTCTGGAGTGGC 596
|||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| |
Sbjct 540 CAACCGGTTCCTCCAATGCCAGCTTAAAAATTCGGTGATTGCAATTTCTTCTGGAGTGTC 599
Query 597 ACTTGTAGTTCACATATTTGTGTGCTGGCTTTTTATCTACGTTCTTGAACTTGGAGTCAT 656
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 600 ACTTGTAGTTCACATATTTGTGTGCTGGCTTTTTGTGTACGTTCTTGAACTTGGAGTCAT 659
Query 657 AGGTACCATCGCTACTGCTAATGTTTCATGGTGGCTCAATTTCTTTATCTTATTTACTTA 716
||| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 660 AGGGACCATCGCTACTGCTAACGTGTCATGGTGGCTCAATGTCTTTATCTTATTTACTTA 719
Query 717 CACCACTTGCGGCGGTTGTCCGCTCACTTGGACCGGTTTCTCCATGGAATCTTTCACGAG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CACCACTTGCGGCGGTTGTCCGCTCACTTGGACCGGTTTCTCCATGGAATCTTTCACGAG 779
Query 777 ACTATGGGAATTCACTAAGCTCTCTGCCTCTTCCGGAATAATGGTTTGCTTGGAGAATTG 836
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 ACTATGGGAATTCACTAAGCTCTCTGCCTCTTCCGGCATAATGGTTTGCTTGGAGAATTG 839
Query 837 GTATTATAGGATGTTAATTGTGATGACTGGAAATTTGGAGAATGCAAGAATTGATGTAGA 896
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 840 GTATTATAGGATGTTAATTGTGATGACTGGAAATTTAGAGGATGCAAGAATTGACGTAGA 899
Query 897 CTCTGTGTCTATATGCATGTCGATAAATGGTTTGGAGATGATGGTTCCACTTGCTTTCTT 956
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTCTATGTCTATATGCATGTCGATAAATGGTTTGGAGATGATGGTTCCACTTGCTTTCTT 959
Query 957 CGCGGGTACCAGCGTACGAGTGGCGAATGAACTAGGAGCAGGCAATGGAAAAAGAGCAAG 1016
|||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 960 CGCGGGGACCAGCGTACGAGTGGCAAATGAATTAGGAGCAGGCAATGGAAAAAGAGCAAG 1019
Query 1017 ATTTGCAATGATCATATCCGTGACACAATCGTTGATCATTGGAATAATAATTTCGGTCCT 1076
||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1020 ATTCGCAATGATCATATCAGTGACACAATCGTTAATCATTGGAATAATCATTTCGGTGCT 1079
Query 1077 CATATATTTTCTTCTTGACCAAATCGGTTGGATCTTCTCTTCAAGTGAAACTGTCCTAAA 1136
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 CATATATTTTCTGCTTGACCAAATCGGTTGGATGTTCTCTTCAAGTGAAACTGTCCTAAA 1139
Query 1137 AGCAGTCAATAATCTCTCTATCCTTTTAGCCTTTGCGATTCTTCTCAACAGTGTCCAACC 1196
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1140 AGCAGTCAATAATCTCTCTATTCTTTTATCCTTTGCGATTCTTCTCAACAGTGTCCAACC 1199
Query 1197 GGTTCTTTCCGGTGTTGCGGTTGGTTCGGGTTGGCAATCATTAGTGGCATTTATAAATTT 1256
|||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1200 GGTTCTCTCCGGTGTTGCGGTTGGTTCGGGTTGGCAATCACTAGTCGCATTTATAAATTT 1259
Query 1257 GGGATGCTACTATTTCATTGGACTTCCACTTGGAATTGTCATGGGCTGGATTTTTAAGTT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1260 GGGATGCTACTATTTCATTGGACTTCCACTTGGAATTGTCATGGGCTGGATGTTCAAGTT 1319
Query 1317 TGGCGTCAAGGGTATTTGGGCGGGCATGATATTCGGAGGAACCATGGTTCAAACATTGAT 1376
||| ||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1320 TGGTGTCAAAGGCATTTGGGCGGGTATGATCTTCGGAGGAACCATGGTTCAAACATTGAT 1379
Query 1377 ATTGATTTTTATTACTATGAGATGTGATTGGGAGACAGAGGCACAAAAAGCAAAGGTTCG 1436
|||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||
Sbjct 1380 ATTGATTTTTATTACTATGAGATGCGATTGGGAGAAAGAGGCACAAAACGCTAAGGTTCG 1439
Query 1437 CGTTAATAAATGGTCTGTATCAAACGCAAGAA 1468
||||| ||||||||||||||| |||||||||
Sbjct 1440 TGTTAACAAATGGTCTGTATCAGACGCAAGAA 1471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5