BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494619
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43860.1 | Symbols: ATCLH2, CLH2 | chlorophyllase 2 | chr5:1... 1581 0.0
> AT5G43860.1 | Symbols: ATCLH2, CLH2 | chlorophyllase 2 | chr5:17630450-17632312
FORWARD LENGTH=1127
Length=1127
Score = 1581 bits (856), Expect = 0.0
Identities = 1002/1073 (93%), Gaps = 8/1073 (1%)
Strand=Plus/Plus
Query 2 Taaaaaacaa-aagaaaaaaTGTCCTCTTCTTCATCAAGAAACGCCTTTGAGGATGGCAA 60
||| ||| || || ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 25 TAATAAAGAACAA-AAAAAATGTCCTCTTCTTCATCAAGAAACGCCTTTGAAGATGGCAA 83
Query 61 ATACAAAACAAATCTCTTAACCTTGGACTCATCATCTCGGTGCTGCAAAATAACACCGTC 120
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 84 ATACAAATCAAATCTCTTAACCTTGGACTCATCATCTCGTTGCTGCAAAATAACACCGTC 143
Query 121 TTCTCGAGCTTCACCGTCTCCGCCGAAGCAGCTGTTGGTGGCTACGCCGGTGGAGGAAGG 180
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 144 TTCTAGAGCTTCACCGTCTCCGCCAAAGCAGCTGTTGGTGGCTACGCCGGTGGAGGAAGG 203
Query 181 AGAATATCCAGTGGTGATGCTCCTCCATGGTTACCTTCTCTACAACTCCTTTTATTCTCA 240
||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 204 AGATTATCCGGTGGTGATGCTCCTCCATGGTTACCTTCTCTACAACTCCTTCTATTCTCA 263
Query 241 ACTTATGTTGCATGTCTCTTCTCATGGCTTCATCTTCATCGCTCCCCAGCTATATAGTAT 300
||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct 264 GCTTATGTTGCATGTCTCTTCTCATGGCTTCATCCTCATCGCTCCTCAGTTATATAGTAT 323
Query 301 CGCCGGACCGGACACAATGGACGAGATTAAATCAACGGCGGAGATTATGGATTGGTTATC 360
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 324 CGCCGGACCAGACACAATGGATGAGATTAAATCAACGGCGGAGATTATGGATTGGTTATC 383
Query 361 AG-ACGGACTTAACCACTTTCTTCCACCACGAGTAACACCAAACCTATCAAAATTTGTAC 419
|| | |||||||| |||||||||||| | | |||||||||||||||||| ||||||| |
Sbjct 384 AGTA-GGACTTAATCACTTTCTTCCAGCGCAAGTAACACCAAACCTATCCAAATTTGCCC 442
Query 420 TCTCAGGCCATAGCCGCGGTGGCAAAACCGCGTTCGCAGTGGCCTTAAAGAAATTTGGAT 479
|||| ||||||||||||||||||||||||||||| || || ||||||||||||||||| |
Sbjct 443 TCTCCGGCCATAGCCGCGGTGGCAAAACCGCGTTTGCGGTCGCCTTAAAGAAATTTGGGT 502
Query 480 ACTCCTCGGATCTAAAGATCTCTATATTGATCGGTATAGATCCAGTCGATGGAACAGGGA 539
|||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 503 ACTCCTCGAATCTAAAGATCTCGACATTGATCGGTATAGATCCAGTCGATGGAACAGGGA 562
Query 540 AAGGGAAACAAACCCCTCCTCCGGTTTTAACCTATGAACCAAACTCATTTGACCTAGACA 599
||||||||||||||||||||||||| || | || ||||||||||||||||||||||
Sbjct 563 AAGGGAAACAAACCCCTCCTCCGGTGTTGGCTTACCTTCCAAACTCATTTGACCTAGACA 622
Query 600 AAATTCCCATGCTTGTGATTGGTTCGGGGCTCGGTGAAACCGCTCGGAACCCATTGTTCC 659
||| || || |||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 623 AAACGCCTATACTTGTGATCGGTTCGGGGCTTGGTGAAACCGCTCGGAACCCATTATTCC 682
Query 660 CACCGTGTGCACCTCCCGGAGTGAACCACCGAGAGTTCTTCCGGGAATGTCAAGGTCCAG 719
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 683 CACCGTGTGCACCTCCCGGAGTGAATCACCGAGAGTTCTTTCGGGAATGTCAAGGTCCAG 742
Query 720 CTTGGCATTTCGTTGCGAAGGATTATGGGCATTTGGACATGCTTGATGATGATACAAAAG 779
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 CATGGCATTTCGTTGCGAAGGATTATGGGCATTTGGACATGCTTGATGATGATACAAAAG 802
Query 780 GGATTAGAGGGAAAAGTTCTTATTGTTTGTGTAAGAATGGTGAAGAAAGAAGACCAATGA 839
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 803 GGATTAGAGGGAAGAGTTCTTATTGTTTGTGTAAGAATGGTGAAGAGAGGAGACCAATGA 862
Query 840 GGAGATTTGTTGGTGGAATTGTTGTGTCGTTTTTGAAGGCTTATTTGGAAGGAGATGATC 899
||||||| ||||||||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 863 GGAGATTCGTTGGTGGACTTGTTGTATCATTTTTGAAGGCTTATTTGGAAGGAGATGATC 922
Query 900 GTGAATTAGTTAAGATCAAAGATGGGTGTCACGAGGGTGTTCCCGTTGAAATTCAAGAGT 959
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 923 GTGAATTAGTTAAGATCAAAGATGGGTGTCACGAGGATGTTCCCGTTGAAATTCAAGAGT 982
Query 960 TTGAGGTTATCATGTAAACATAAGATTTTCTATAGGGGCTGGTTTT-CTTATTTTCAATA 1018
|||||||||||||||||||||||| |||||| |||||||||||||| || ||| ||||||
Sbjct 983 TTGAGGTTATCATGTAAACATAAGTTTTTCTTTAGGGGCTGGTTTTTCT-ATTGTCAATA 1041
Query 1019 TTATTAGCTTTTGTTGCTTATG-TTGTTACAAACTTATAATGTACAACTCTTT 1070
| || ||||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 1042 TCATCAGCTTTTGTTGCTTATGGTT-TTACAAACTTATATTGTACAACTCTTT 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5