BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494620
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43850.1 | Symbols: ATARD4, ARD4 | RmlC-like cupins superfam... 948 0.0
> AT5G43850.1 | Symbols: ATARD4, ARD4 | RmlC-like cupins superfamily
protein | chr5:17627182-17629159 REVERSE LENGTH=783
Length=783
Score = 948 bits (513), Expect = 0.0
Identities = 570/598 (95%), Gaps = 2/598 (0%)
Strand=Plus/Plus
Query 1 AAAGCATTCACACAACGAAGATCACTAATGGCTCTCGAGGCATGGTTTATGGATGATAGC 60
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 11 AAAGCATTTACACAACGAAGATCATTAATGGCTCTCGAGGCATGGTTTATGGATGATAGC 70
Query 61 AATGAAGACCAGAGACTTCCTCATCATCGTAACCCCAAAGAGCTCGTCTCGTTGGATTAC 120
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 71 AATGAGGACCAGAGACTTCCTCATCATCGTAACCCGAAAGAACTCGTCTCGTTGGATTAC 130
Query 121 TTGGCAGAGTTGGGAGTGTTGTACTGGAAGTTGAACCCTGAGAACTACGAGAATGATCCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 131 TTGGCAGAGTTGGGAGTGTTGTACTGGAAGTTGAACCCTGAGAACTACGAGAATGATTCT 190
Query 181 GAACTAAGCAAGATTAGAGAAGA-ACGGGGTTACGATTACATGGATTTGCTGGATCTGTG 239
||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 191 GAACTTAGCAAGATTAGAGAAGACA-GGGGTTACGATTACATGGATTTGCTGGATCTGTG 249
Query 240 TCCCGAGAAAGTCAGCAACTACGAAGAGAAGCTGAAGAACTTTTTCACAGAACACATTCA 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 250 TCCCGAGAAAGTCAGCAACTACGAAGAAAAGCTGAAGAACTTTTTCACAGAACACATTCA 309
Query 300 CAAGGACGAGGAGATTCGGTACTGCCTAGCGGGAAGTGGCTACTTTGATGTTAGGGACAA 359
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 310 CAAGGACGAAGAGATTCGGTACTGCCTAGCAGGAAGTGGCTACTTTGATGTTAGGGACAA 369
Query 360 GGATGACCGTTGGATCCGTATCTGGATGCAACCGGGCGATCTTATCATCCTTCCTGCCGG 419
|||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 370 GGATGATCGTTGGATCCGTATCTGGATGCAACCTGGCGATCTCATTGTCCTTCCTGCCGG 429
Query 420 AATCTACCACCGGTTCACACTCGACACTAGCAACTACATCAAGCTAATGAGGCTGTTCGT 479
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 430 AATCTACCACCGGTTCACACTCGACGCCAGCAACTACATCAAGCTAATGAGGCTGTTCGT 489
Query 480 GGGAGAACCGGTTTGGACACCATATAACCGGCCACAGGAAGAACATCCGGTTAGGCAAAA 539
||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 490 GGGGGAACCGGTTTGGACACCATATAACCGGCCACAGGAAGAACATCCTGTTAGGAAAAA 549
Query 540 GTATATAAACGGCTTAACCCACAAGTTTGGAGAAACCATTAAAGCACACTAACAATAT 597
|||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct 550 GTATATCCACGGCTTAACCTACAAGTTTGGAGAAACCGTTAAAGCACATTAACAATAT 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30693063817
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5