BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494627
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43780.1 | Symbols: APS4 | Pseudouridine synthase/archaeosin... 2333 0.0
AT4G14680.1 | Symbols: APS3 | Pseudouridine synthase/archaeosin... 671 0.0
> AT5G43780.1 | Symbols: APS4 | Pseudouridine synthase/archaeosine
transglycosylase-like family protein | chr5:17589394-17591535
REVERSE LENGTH=1702
Length=1702
Score = 2333 bits (1263), Expect = 0.0
Identities = 1527/1649 (93%), Gaps = 39/1649 (2%)
Strand=Plus/Plus
Query 1 CAATGTTCTCTTAAAGATTAAGAGAGCCAAAACAAAGC-----AA--T---TTCAATGGC 50
||||||||||||||||||||||||||||||||| |||| || | |||||||||
Sbjct 1 CAATGTTCTCTTAAAGATTAAGAGAGCCAAAACGAAGCAAATTAATCTGCCTTCAATGGC 60
Query 51 TTCTTCAGCAGCAGCCATCGTCTTCTCCGATTCTCCGTTTCGTTCTTCACCATTAATCCA 110
|||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||
Sbjct 61 TTCTTCAGCAGCAGCCATCG---TCTCCGGTTCTCCATTTCGTTCTTCACCATTAATCCA 117
Query 111 T-ACGCATCATGTTTCTCGTTATGCTCCTAGATCCGTCTCCGTCTCCGTCGTCTCTCCCT 169
| || ||||||| |||||||||||||||| ||||| |||||| | ||| ||||| ||
Sbjct 118 TAAC-CATCATGCTTCTCGTTATGCTCCTGGATCCATCTCCG--T-CGT-ATCTCT-CC- 170
Query 170 CCCGTCGAGCTTCCCGCCGCGGTCTCGCCGTGAAATCGGCGTTAATCGAGCCAGACGGAG 229
|||||| || ||||||||| || ||| |||| ||||||| ||| ||||||||||||||||
Sbjct 171 CCCGTCAAGTTTCCCGCCGTGGCCTCTCCGTTAAATCGGGGTTGATCGAGCCAGACGGAG 230
Query 230 GAAAACTAATGAACCTCGTAGTCGAAGAATCACGGCGGCGCGTGATGAAACGCGAGGCGG 289
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 231 GAAAACTCATGAACCTCGTAGTCGAAGAATCACGGCGGCGCGTGATGAAACACGAGGCGG 290
Query 290 AGACGGTTCCTATAAGGATCAAGCTGAATCGTGTGGATCTAGAGTGGGTACATGTGCTAA 349
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 291 AGACGGTTCCGGCAAGGATCAAGCTGAACCGTGTGGATCTAGAGTGGGTACATGTGCTTA 350
Query 350 GCGAAGGCTGGGCAAGTCCTCTCAAAGGTTTCATGAGACAGTCAGAGTTCCTCCAAACAC 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GCGAAGGCTGGGCAAGTCCTCTCAAAGGTTTCATGAGACAGTCAGAGTTCCTCCAAACAC 410
Query 410 TTCATTTTAACTCGTTCCGGCTTGAAGACGGCTCCGTCGTCAACATGTCGGTTCCGATCG 469
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 411 TTCATTTTAACTCGTTCCGGCTCGAAGACGGCTCCGTCGTCAACATGTCGGTTCCGATCG 470
Query 470 TCCTCGCTATCGACGACGATCAGAAGTTTCGTATCGGAGATTCCAACCGAGTCACGCTCG 529
||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||
Sbjct 471 TCCTCGCTATCGACGACGATCAGAAGTTTCGTATCGGGGATTCCAACCAAGTCACACTCG 530
Query 530 TTGACTCGGTTGGTAATCCGATCGCGATTCTTAACGATATTGAGATTTACAAGCATCCGA 589
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 531 TTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGATATTGAGATTTACAAGCATCCCA 590
Query 590 AAGAAGAGCGAATCGCGAGAACATGGGGAACCACGGCTCGTGGACTTCCTTATGCGGAAG 649
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 591 AAGAAGAACGAATCGCGAGAACATGGGGAACCACGGCTCGTGGGCTTCCTTATGCGGAAG 650
Query 650 AAGCAATCACCAAAGCTGGAAACTGGTTGATTGGAGGTGATTTGCAAGTCCTGGAGCCGA 709
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 651 AAGCAATCACCAAAGCTGGAAACTGGTTGATTGGAGGTGATTTACAAGTTTTGGAGCCGA 710
Query 710 TCAAGTACAATGATGGTTTAGATCGGTTTCGTTTATCTCCATCTCAGCTGCGGGAGGAGT 769
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 711 TCAAGTACAATGATGGTTTAGACCGGTTTCGTTTATCTCCGTCGCAGCTGCGGGAGGAGT 770
Query 770 TTATAAGGCGCGGTGCGGACGCGGTTTTTGCTTTCCAG-TTAAGGAACCCGGTTCACAAT 828
|||||||||||||||||||||||||||| || |||||| ||| |||||||||| || |||
Sbjct 771 TTATAAGGCGCGGTGCGGACGCGGTTTTCGCGTTCCAGCTTA-GGAACCCGGTGCATAAT 829
Query 829 GGTCATGCGCTTCTTATGACTGATACTCGTAGAAGGCTTCTTGAGATGGGTTACAAAAAC 888
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 830 GGTCATGCGCTTCTTATGACGGATACTCGTAGAAGACTTCTTGAGATGGGTTACAAAAAC 889
Query 889 CCTGTCTTGTTGTTGAATCCACTTGGTGGATTCACTAAGGCTGATGATGTACCTCTCAGC 948
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 890 CCTGTCTTGTTGTTGAATCCACTTGGTGGGTTTACTAAGGCTGATGATGTACCTCTCAGC 949
Query 949 TGGCGTATGAGGCAACACGAGAAGGTGTTGGAGGATGGTGTACTGGATCCTGAGACCACT 1008
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 950 TGGCGTATGAGACAGCACGAGAAGGTGTTGGAGGATGGTGTACTGGATCCAGAGACCACT 1009
Query 1009 GTAGTGTCCATCTTCCCATCTCCAATGCTCTATGCTGGTCCGACTGAGGTTCAGTGGCAT 1068
||||| || |||||||||||||| ||||| || ||||| || ||||||||||| ||||||
Sbjct 1010 GTAGTCTCTATCTTCCCATCTCCGATGCTATACGCTGGCCCAACTGAGGTTCAATGGCAT 1069
Query 1069 GCCAAAGCTAGGATCAACGCGGGAGCTAATTTCTACATTGTTGGTCGCGATCCAGCTGGT 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1070 GCCAAAGCTAGGATCAACGCGGGAGCTAATTTCTACATTGTTGGTCGCGATCCTGCCGGT 1129
Query 1129 ATGGGCCATCCGACAGAGAAGAGAGATCTCTATGATGCCGATCACGGCAAGAAAGTGCTT 1188
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1130 ATGGGCCATCCGACAGAGAAGAGAGATCTTTATGATGCCGATCACGGGAAGAAAGTGCTT 1189
Query 1189 AGCATGGCCCCAGGACTCGAACGTCTCAACATTCTTCCCTTCAAGGTCGCTGCATATGAT 1248
|||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1190 AGCATGGCACCAGGACTTGAACGCCTCAACATTCTACCCTTCAAGGTCGCTGCATATGAC 1249
Query 1249 AAAACCCAGGGGAAAATGGCTTTCTTCGATCCTTCTAGGTCTCAAGACTTCCTCTTCATA 1308
||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 1250 AAAACTCAGGGGAAAATGGCCTTCTTTGATCCTTCCAGGTCTCAAGACTTCCTCTTCATA 1309
Query 1309 TCAGGAACCAAGATGCGTGGCTTGGCGAAGAAGAAAGAGAATCCACCAGATGGTTTCATG 1368
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1310 TCAGGAACCAAGATGCGTGGGTTGGCGAAGAAGAAAGAGAACCCACCAGATGGTTTCATG 1369
Query 1369 TGTCCCTCTGGTTGGAAGGTGTTGGTTGATTACTATGACAGTCTCAGCGCAGAGTCTGGT 1428
||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |||||
Sbjct 1370 TGTCCCTCTGGTTGGAAGGTGTTGGTTGACTACTACGACAGTCTCAGTGCAGAGACTGGT 1429
Query 1429 AATGGAAGGGTTTCAGAAGCTGTCGCTTCTGCTTGAATGCAAA-GGTT-CCTTGTCCCAC 1486
||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||
Sbjct 1430 AATGGAAGGGTTTCAGAAGCTGTTGCTTCTGCTTGAATGCAAAAGGTTTCCTTGTCCCAC 1489
Query 1487 AAGTTTCACATTTCCTGTTTGTTA--AG-TAA-C------A-AA---GCTTTCAATAAAA 1532
||| |||||||||||||||||||| | ||| | | || |||| ||||||||
Sbjct 1490 AAGATTCACATTTCCTGTTTGTTAGTAACTAAACTCCGTGACAAAAAGCTTCCAATAAAA 1549
Query 1533 CCAATGTAACATCTGTGTGTTCTTAGCATCTCTGTTGTCAAACTTGTCATCGAGTCGCAT 1592
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 1550 CCAATGTAACATCTGTGTGTTCTTTGCGTCTCTGTTGTCAAACTTGTCGTCGAGTCGCAT 1609
Query 1593 CGATATGTACCATATTTGCTTATTGTGTT 1621
|||| ||||||||||||||||||||||||
Sbjct 1610 CGATTTGTACCATATTTGCTTATTGTGTT 1638
> AT4G14680.1 | Symbols: APS3 | Pseudouridine synthase/archaeosine
transglycosylase-like family protein | chr4:8413288-8415391
REVERSE LENGTH=1633
Length=1633
Score = 671 bits (363), Expect = 0.0
Identities = 860/1096 (78%), Gaps = 50/1096 (5%)
Strand=Plus/Plus
Query 340 CATGTGCTAAGCGAAGGCTGGGCAAGTCCTC-TCAAAGGTTTCATGAGACAGTCAGAGTT 398
|||||| | || ||||| ||||| ||||||| || ||||| ||||| | || |||||
Sbjct 360 CATGTGTTGAGTGAAGGTTGGGCTAGTCCTCTTCGTGGGTTT-ATGAGGGAATCTGAGTT 418
Query 399 CCTCCAAACACTTCATTTTAACTCGTTCCGGCTTGAAGACGGCTCCGTCGTCAACATGTC 458
||||||||| |||||||| || | ||| || || || || || || || || |||||
Sbjct 419 CCTCCAAACTCTTCATTTCAATTTGTTGAATCTCGATGATGGGTCTGTTGTTAATATGTC 478
Query 459 GGTTCCGATCGTCCTCGCTATCGACGA-CGATC-AGAAGTTTCGT-ATCGGAGATTCCAA 515
|| || || || || || || || || | | | | ||| | | ||||| || || ||
Sbjct 479 TGTGCCTATTGTTCTTGCGATTGATGATC-AACAAAAAG--CCCTAATCGGTGAATCTAA 535
Query 516 CCGAGTCACGCTCGTTGACTCGGTTGGTAATCCGATCGCGATTCTTAACGATATTGAGAT 575
|| ||| | || ||||| || | || |||||| ||||| ||||| || |||||||||||
Sbjct 536 ACGTGTCTCCCTTGTTGATTCTGATGATAATCCAATCGCTATTCTCAATGATATTGAGAT 595
Query 576 TTACAAGCATCCGAAAGAAGAGCGAATCGCGAGAACATGGGGAACCACGGC-TCGTGGAC 634
||| || |||||||||||||||||||| |||||||| ||||| || || || || ||
Sbjct 596 TTATAAACATCCGAAAGAAGAGCGAATAGCGAGAACTTGGGGTACGACTGCACCG-GG-T 653
Query 635 TT-CCTTATGCGGAAGAAGCAATCACCAAAGCTGGAAACTGGTTGATTGGAGGTGAT-TT 692
|| ||||||| ||||| || || ||||| |||||| ||||| | ||||| |||||| ||
Sbjct 654 TTGCCTTATGTAGAAGAGGCGATAACCAATGCTGGAGACTGGCTCATTGGGGGTGATCTT 713
Query 693 GCAAGTCCTGGAGCC-GATCAAGTACAATGAT-GGTTTAGATCGGTTTC--GTTTATCTC 748
| | || |||| || | | |||||||||||| || || |||| ||||| | || || |
Sbjct 714 G-AGGTTTTGGAACCTG-TTAAGTACAATGATGGGCTT-GATC-GTTTCAGGCTT-TCCC 768
Query 749 CATCTCAGCTGCGGGAGGAGTTTATA-AGGCGCGGTGCGGACGCGGTTTTTGC-TTTCCA 806
| | | | ||||| ||||| || | | || |||||||| ||||| ||||| ||| ||
Sbjct 769 CGTTTGAACTGCGTAAGGAG-CTAGAGAAACGTGGTGCGGATGCGGTCTTTGCGTTT-CA 826
Query 807 G-TTAAGGAACCCGGTTCACAATGGTCATGCGCTTCTTATGACTGATACTCGTAGAAGGC 865
| || |||||||| ||||| ||||| ||||| ||||||||||||||||||||||| || |
Sbjct 827 GCTT-AGGAACCCAGTTCATAATGGACATGCTCTTCTTATGACTGATACTCGTAGGAGAC 885
Query 866 TTCTTGAGATGGGTTACAAAAACCCTGT-CTTGTTG-TTGAATCCACTT-GGTGGATTCA 922
|||||||||||||||| ||||||||| | ||| ||| || ||||| || || || || |
Sbjct 886 TTCTTGAGATGGGTTATAAAAACCCTATCCTT-TTGCTT-CATCCA-TTGGGAGGGTTTA 942
Query 923 CTAAGGCTGATGATGTACCTCTCAGCTGGCGTATGAGGCAACACGAGAAGGTGTTGGAGG 982
| || ||||||||||| ||||| |||||||| |||| || |||||||||||| | ||||
Sbjct 943 CAAAAGCTGATGATGTTCCTCTAAGCTGGCGAATGAAACAGCACGAGAAGGTGCTAGAGG 1002
Query 983 ATGGTGTACTGGATCCTGAGACCACTGTAGTGTCCATCTTCCCATCTCCAATGCTCTATG 1042
||||||| || ||||| ||||| ||||| || ||||| ||||||||||||||||||||||
Sbjct 1003 ATGGTGTTCTTGATCCAGAGACTACTGTGGTTTCCATATTCCCATCTCCAATGCTCTATG 1062
Query 1043 CTGGTCCGACTGAGGTTCAGTGGCATGCCAAAG-CTAGGATCAACGCGGGAGCTAATTTC 1101
||||||| || || || || ||||| || |||| |||||||||| || || ||||| |||
Sbjct 1063 CTGGTCCAACCGAAGTCCAATGGCACGC-AAAGGCTAGGATCAATGCTGGTGCTAACTTC 1121
Query 1102 TACATTGTTGGTCGCGATCCAGCTGGTATGGGCCATCC-GACAGAGAAGA-GAGATCTCT 1159
|||||||| ||| | ||||| ||||| ||||| ||||| | ||||| | | ||||| |
Sbjct 1122 TACATTGTCGGTAGGGATCCGGCTGGAATGGGTCATCCCGTG-GAGAA-ACGTGATCTGT 1179
Query 1160 ATGATGCCGATCACGGCAAGAAAGTGCTTAGCATGGCCCCAGGACTCGAACGTCTCAACA 1219
| ||||| |||||||| |||||||| || |||||||| || ||||||||||| |||||||
Sbjct 1180 ACGATGCTGATCACGGGAAGAAAGTTCTAAGCATGGCTCCTGGACTCGAACGACTCAACA 1239
Query 1220 TTCTTCCCTTCAAGGTCGCTGCATATGATAAAACCCAGGGGAAA-ATGGCTTTCTTCGAT 1278
||||||| |||| ||| ||||| || ||||| || || || ||| ||||||||||| |||
Sbjct 1240 TTCTTCCTTTCAGGGTTGCTGCGTACGATAAGACACAAGG-AAAGATGGCTTTCTTTGAT 1298
Query 1279 CCTTCTAGGTCTCAAGACTTCCTCTTCATATCAGGAACCAAGATGCGTGGC-TTGGCGAA 1337
|| || ||| |||| |||||| | ||||| || || || |||||| | | | ||||| ||
Sbjct 1299 CCCTCAAGGGCTCAGGACTTCTTGTTCATTTCTGGCACTAAGATGAGAG-CATTGGCAAA 1357
Query 1338 GAAGAAAGAGAATCCACCAGATGG-TTTCATGTGTCCCTCT-GGTTGGAAGGTG-TTGGT 1394
||| | |||||| ||||||||||| ||| ||||| |||| || ||||| || ||| |
Sbjct 1358 GAACAGAGAGAACCCACCAGATGGATTT-ATGTG-CCCTGGAGGCTGGAAAGTCCTTG-T 1414
Query 1395 TGATTACTATGACAGT 1410
|||||||| ||||||
Sbjct 1415 GGATTACTACGACAGT 1430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80069869275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5