BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494628
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43770.1 | Symbols: | proline-rich family protein | chr5:17... 785 0.0
> AT5G43770.1 | Symbols: | proline-rich family protein | chr5:17588790-17589467
FORWARD LENGTH=678
Length=678
Score = 785 bits (425), Expect = 0.0
Identities = 530/579 (92%), Gaps = 14/579 (2%)
Strand=Plus/Plus
Query 1 CAAAAGTTATGTCTTTGATCTCTGCAAATCTTATGCGAGGCACTCTCTTTT-TATGTTCA 59
|||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||
Sbjct 10 CAAAAGTTATGTCTTTGATCTCCGCAAATCTTATGCGAGGCACT-TTTTTTGTATGTTCA 68
Query 60 TCATTCAAGTCTAAGCCATGGTCTACACGGTTAATCACTGCGGCGAAATCGGTTTCGTGT 119
|||||||||||||||||||||||| | |||||||||| |||| ||||||||||||||||
Sbjct 69 TCATTCAAGTCTAAGCCATGGTCTGGAAGGTTAATCACCGCGGTGAAATCGGTTTCGTGT 128
Query 120 ACTTCTAAGCCGATTAGAGGGTTAACCAACTCTACTACTGGAGTCTATTTCGTTAGCCAA 179
|||||||||||| |||||||||||||||||| || ||| || ||||||||||||||||||
Sbjct 129 ACTTCTAAGCCGGTTAGAGGGTTAACCAACTATAGTACCGGGGTCTATTTCGTTAGCCAA 188
Query 180 ACCGGTCCACCGA-AAATCCAA--TTCCCTGGTGGGTCTCCTTCAGAGGAAGAGTTACCT 236
||||||||||| | |||| ||| ||||| ||||| |||||||| ||| |||||||||||
Sbjct 189 ACCGGTCCACC-AGAAAT-CAAGTTTCCC-GGTGGATCTCCTTCGGAGAAAGAGTTACCT 245
Query 237 TCACGG-CCAAGTAGAGGACCAGAGTGGGCTCCATTAGAAGTCCCGGAGCTTCCTAATAT 295
||| || ||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 246 TCA-GGACCAAGTAGAGGACCAGAGTTGGCTCCATTAGAAGTTCCGGAGCTTCCTAATAT 304
Query 296 ACCGGAGATAAATCCGTCGGAAACTCCACCAGAAATTACGACGGTTCCAAGTGATCCACC 355
||| ||||||| |||||||||||||||||| ||| |||| ||||||||||||||||||||
Sbjct 305 ACCAGAGATAAGTCCGTCGGAAACTCCACCGGAAGTTACAACGGTTCCAAGTGATCCACC 364
Query 356 ACCGCTTGGACCGCCACAGACTCCTGGCCCCGAGTTTCCGGTTCCACCATCTCCATCTCC 415
||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 365 CCCGCTTGGACCACCGCAGACTCCGGGCCCGGAGTTTCCGGTTCCACCATCTCCATCTCC 424
Query 416 ACCGATGCCAGATACTCCAAATCCTCCTAGGCCAAAAACTCCCCCTGATGTGA-TACCTC 474
||||||||||||||||||||||||||||| |||||||| || |||||||| | | ||||
Sbjct 425 ACCGATGCCAGATACTCCAAATCCTCCTACACCAAAAACACCACCTGATGT-AGTGCCTC 483
Query 475 CGATTTGGGAACCACCTCGACCACCGGATATCTTCCCACCGGAGAGTCCACCACCGGGAA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CGATTTGGGAACCACCTCGACCACCGGATATCTTCCCACCGGAGAGTCCACCACCGGGAA 543
Query 535 TCGACCTGCCACCGCCGTTAGG-CCCTACCATCATGTAG 572
| |||| ||||||||| ||||| ||| ||||||||||||
Sbjct 544 TTGACCCGCCACCGCCTTTAGGACCC-ACCATCATGTAG 581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5