BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494670
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43330.1 | Symbols: | Lactate/malate dehydrogenase family p... 1899 0.0
AT1G04410.1 | Symbols: | Lactate/malate dehydrogenase family p... 1199 0.0
> AT5G43330.1 | Symbols: | Lactate/malate dehydrogenase family
protein | chr5:17390433-17392645 FORWARD LENGTH=1314
Length=1314
Score = 1899 bits (1028), Expect = 0.0
Identities = 1182/1253 (94%), Gaps = 24/1253 (2%)
Strand=Plus/Plus
Query 23 GCT-TCACACTGATCATCAATCACGATCTCTTCTATTTTATTCACCGGCGATAATTTTCC 81
||| || |||||||||| |||| ||||| ||| |||| ||||||||||||||||||||
Sbjct 49 GCTCTCTCACTGATCAT---TCACAATCTC-TCTCTTTTTTTCACCGGCGATAATTTTCC 104
Query 82 GATCTCGA-T-TAAGATGGCGAAGGAACCAGTCCGTGTTCTTGTTACCGGAGCTGCAGGA 139
|||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 105 GATCTCGATTATAAGATGGCGAAGGAACCAGTTCGTGTTCTTGTTACCGGAGCTGCAGGA 164
Query 140 CAAATCGGATATGCTCTTGTTCCTATGATTGCAAGGGGGATAATGCTTGGTGCAGACCAG 199
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 165 CAAATCGGATATGCTCTTGTTCCTATGATTGCAAGGGGGATAATGCTTGGTGCTGATCAG 224
Query 200 CCTGTGATCCTCCACATGCTTGATATCCCTCCGGCAGCAGAAGCTTTGAACGGTGTGAAA 259
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 225 CCTGTGATCCTCCACATGCTTGACATCCCTTTTGCAGCAGAAGCTTTGAACGGTGTGAAG 284
Query 260 ATGGAGTTGATCGATGCTGCTTTCCCTCTTCTGAAA-GGTGTGGTGGCTACAACTGATGC 318
||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 285 ATGGAATTGGTCGATGCTGCTTTCCCTCTTCT-AAAGGGTGTGGTGGCTACAACTGATGC 343
Query 319 CGTTGAAG-GATGTACCGGTGTTAATGTTGCTGTCATGGTTGGCGGTTTCCCGAGGAAGG 377
||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 344 TGTTGAAGCG-TGTACCGGTGTTAATGTTGCTGTCATGGTTGGTGGTTTCCCGAGGAAGG 402
Query 378 AAGGAATGGAGAGGAAGGATGTTATGTCGAAGAACGTTTCCATTTACAAGTCTCAAGCTG 437
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 403 AAGGAATGGAGAGGAAGGATGTTATGTCCAAGAACGTTTCCATTTACAAGTCTCAAGCTT 462
Query 438 CTGCCTTGGAGAAGCATGCCGCACCAAACTGCAAGGTTCTGGTTGTTGCAAACCCTGCAA 497
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 463 CTGCCTTGGAGAAGCATGCTGCACCAAACTGCAAGGTTCTGGTTGTTGCAAACCCTGCAA 522
Query 498 ACACCAATGCATTGATCCTGAAGGAATTTGCACCATCGATCCCAGAGAAGAACATTACTT 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 ACACCAATGCATTGATCCTGAAGGAATTTGCACCATCGATCCCAGAGAAGAACATTACTT 582
Query 558 GCTTGACCAGGCTTGACCACAACAGGGCATTGGGACAAGTCTCTGAGAGGTTAAGCGTAC 617
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 583 GCTTGACCAGGCTTGACCACAACAGGGCATTGGGACAAGTGTCTGAGAGGTTAAGCGTAC 642
Query 618 CAGTGTCTGATGTCAAGAACGTGATTATCTGGGGAAACCACTCATCAACCCAATACCCAG 677
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CAGTGTCTGATGTGAAGAACGTGATTATCTGGGGAAACCACTCATCAACCCAATACCCAG 702
Query 678 ATGTCAACCATGCTACCGTTAAGACTTCC-TCTGGAGAGAAGCCAGTGCGTGAGCTAGTC 736
|||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 703 ATGTCAACCACGCTACCGTTAAGACTTCCGT-TGGAGAGAAGCCAGTGCGTGAGCTAGTC 761
Query 737 AAGAATGACGAGTGGTTGAATGGAGAGTTCATCTCTACCGTTCAACAACGTGGAGCTGCC 796
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 762 AAGAATGACGAGTGGTTGAATGGAGAGTTCATCTCTACCGTTCAACAACGTGGTGCTGCC 821
Query 797 ATTATCAAGGCCAGGAAACTGTCTAGTGCACTCTCTGCAGCTAGCTCTGCTTGTGACCAT 856
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 822 ATTATCAAGGCCAGGAAGCTGTCTAGTGCACTTTCTGCAGCTAGCTCAGCTTGTGACCAT 881
Query 857 ATCCGTGATTGGGTCGTTGGAACACCCGAGGGCACATTTGTTTCAATGGGAGTATACTCA 916
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 882 ATCCGTGATTGGGTTGTTGGAACACCTGAGGGCACATTTGTTTCAATGGGAGTATACTCA 941
Query 917 GATGGATCCTACAATGTTCCAGCTGGACTTATCTACTCTTTCCCCGTAACCTGCCGTAAT 976
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 942 GATGGATCCTACAATGTTCCAGCTGGACTTATCTACTCCTTCCCCGTAACCTGCCGTAAT 1001
Query 977 GGAGAGTGGACTATTGTTCAAGGTTTACCGATCGATGAAGTATCAAGGAAGAAGATGGAT 1036
||||||||||| |||||||||||||||||||| ||||| | ||| |||||||||||||||
Sbjct 1002 GGAGAGTGGACCATTGTTCAAGGTTTACCGATTGATGACGCATCGAGGAAGAAGATGGAT 1061
Query 1037 TTGACAGCAGAGGAGTTGAAGGAAGAGAAGGACCTCGCTTACTCATGCCTCTCTTAAACC 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 TTGACAGCAGAGGAGTTGAAGGAAGAGAAGGACCTCGCTTACTCATGCCTCTCTTAAACC 1121
Query 1097 GGT-TTTTCTCAGCCGGTTTAATCAGTGAGAGCTTTGTTTTGAATAAAAAAGTTT-GCTA 1154
||| |||||||||| |||||||||||||| |||||||||| ||||||| |||||| | ||
Sbjct 1122 GGTCTTTTCTCAGCTGGTTTAATCAGTGAAAGCTTTGTTTCGAATAAAGAAGTTTTGTTA 1181
Query 1155 TAAA--GAACTTTTAATAAACCTCTTGAGCTTGAGGTTTAGTTTTCCTAATTTTCG--T- 1209
|||| ||||||||||||| |||| |||||||||||||||||||||||||| | | |
Sbjct 1182 TAAAATGAACTTTTAATAA-CCTCATGAGCTTGAGGTTTAGTTTTCCTAATGTGCCCATG 1240
Query 1210 -TGTGTCAGTGCTGATTTGCTGACCA--TATAAACAGTCATATTGATAATTGA 1259
|||||| || ||||||||||||||| |||||||| |||| |||||||||||
Sbjct 1241 ATGTGTCGGTACTGATTTGCTGACCAGATATAAACAATCATTTTGATAATTGA 1293
> AT1G04410.1 | Symbols: | Lactate/malate dehydrogenase family
protein | chr1:1189078-1191412 REVERSE LENGTH=1484
Length=1484
Score = 1199 bits (649), Expect = 0.0
Identities = 909/1036 (88%), Gaps = 12/1036 (1%)
Strand=Plus/Plus
Query 66 CCGGCGATAATTTTCCGATCTCGATTAAGATGGCGAAGGAACCAGTCCGTGTTCTTGTTA 125
|||||||||| | |||||||| || | ||||||||| |||||||| ||||| || ||||
Sbjct 119 CCGGCGATAA-TCTCCGATCTAGA-TCCGATGGCGAAAGAACCAGTTCGTGTGCTCGTTA 176
Query 126 CCGGAGCTGCAGGACAAATCGGATATGCTCTTGTTCCTATGATTGCAAGGGGGATAATGC 185
| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 177 CTGGAGCTGCAGGACAAATCGGATATGCTCTTGTACCTATGATTGCAAGGGGTATCATGC 236
Query 186 TTGGTGCAGACCAGCCTGTGATCCTCCACATGCTT-GATATCCCTCCGGCAGCAGAAGCT 244
||||||| ||||| ||||| |||||||||||| || ||||| ||||| || || ||||||
Sbjct 237 TTGGTGCTGACCAACCTGTTATCCTCCACATG-TTGGATATTCCTCCAGCTGCTGAAGCT 295
Query 245 TTGAACGGTGTGAAAATGGAGTTGATCGATGCTGCTTTCCCTCTTCTGAAAGGTGTGGTG 304
||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 296 TTGAACGGTGTTAAGATGGAGTTGATCGATGCTGCTTTCCCTCTTCTTAAAGGTGTTGTT 355
Query 305 GCTACAACTGATGCCGTTGAAGGATGTACCGGTGTTAATGTTGCTGTCATGGTTGGCGGT 364
|||||||||||||||||||| |||||||| || || ||||||||||| |||||||| |||
Sbjct 356 GCTACAACTGATGCCGTTGAGGGATGTACTGGAGTCAATGTTGCTGTTATGGTTGGTGGT 415
Query 365 TTCCCGAGGAAGGAAGGAATGGAGAGGAAGGATGTTATGTCGAAGAACGTTTCCATTTAC 424
||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| |||
Sbjct 416 TTCCCGAGGAAAGAAGGTATGGAGAGGAAGGATGTGATGTCCAAGAATGTTTCCATCTAC 475
Query 425 AAGTCTCAAGCTGCTGCCTTGGAGAAGCATGCCGCACCAAACTGCAAGGTTCTGGTTGTT 484
|||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 476 AAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGGTTCTTGTTGTG 535
Query 485 GCAAACCCTGCAAACACCAATGCATTGATCCTGAAGGAATTTGCACCATCGATCCCAGAG 544
|| ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||| ||
Sbjct 536 GCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAATTTGCACCATCAATCCCTGAA 595
Query 545 AAGAACAT-TACTTGCTTGACCAGGCTTGACCACAACAGGGCATTGGGACA-AGTCTCTG 602
|||||||| | |||| ||||| |||||||||||||||||||| |||||||| | ||||||
Sbjct 596 AAGAACATCT-CTTGTTTGACAAGGCTTGACCACAACAGGGCTTTGGGACAGA-TCTCTG 653
Query 603 AGAGGTTAAGCGTACCAGTGTCTGATGTCAAGAACGTGATTATCTGGGGAAACCACTCAT 662
||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 654 AGAGGTTGAGCGTGCCAGTGTCTGATGTTAAGAACGTGATCATCTGGGGAAACCACTCAT 713
Query 663 CAACCCAATACCCAGATGTCAACCATGCTACCGTTAAGACTTCCTCTGGAGAGAAGCCAG 722
| | || |||||||||||||||||||||| || |||| || |||||||||||||| |
Sbjct 714 CCTCACAGTACCCAGATGTCAACCATGCTAAAGTGCAGACCTCGTCTGGAGAGAAGCCTG 773
Query 723 TGCGTGAGCTAGTCAAGAATGACG-AGTGGTTGAATGGAGAGTTCATCTCTACCGTTCAA 781
| |||||||| |||||| | || | | |||||| | ||||| || |||||||| ||||||
Sbjct 774 TCCGTGAGCTCGTCAAGGACGATGCA-TGGTTGGACGGAGAATTTATCTCTACAGTTCAA 832
Query 782 CAACGTGGAGCTGCCATTATCAAGGCCAGGAAACTGTCTAGTGCACTCTCTGCAGCTAGC 841
|||||||||||||| || |||||||| ||||| |||||||||| |||||||| ||||||
Sbjct 833 CAACGTGGAGCTGCAATCATCAAGGCGAGGAAGTTGTCTAGTGCGCTCTCTGCTGCTAGC 892
Query 842 TCTGCTTGTGACCATATCCGTGATTGGGTCGTTGGAACACCCGAGGGCACATTTGTTTCA 901
|||||||||||||| |||||||| |||||| ||||||| || ||||| || || |||||
Sbjct 893 TCTGCTTGTGACCACATCCGTGACTGGGTCCTTGGAACTCCAGAGGGTACGTTCGTTTCC 952
Query 902 ATGGGAGTATACTCAGATGGATCCTACAATGTTCCAGCTGGACTTATCTACTCTTTCCCC 961
|||||||||||||| ||||| || |||| |||||| | |||||||||||||| |||||
Sbjct 953 ATGGGAGTATACTCCGATGGCTCTTACAGCGTTCCATCAGGACTTATCTACTCCTTCCCT 1012
Query 962 GTAACCTGCCGTAATGGAGAGTGGACTATTGTTCAAGGT-TTACCGATCGATGAAGTATC 1020
||||| || || |||||||| |||| |||||| ||||| || ||||| |||||||||||
Sbjct 1013 GTAACTTGTCGCAATGGAGACTGGAGTATTGTCCAAGGCCTT-CCGATTGATGAAGTATC 1071
Query 1021 AAGGAAGAAGATGGATTTGACAGCAGAGGAGTTGAAGGAAGAGAAGGACCTCGCTTACTC 1080
||||||||||||||||||||| ||||||||| | ||||||||||||||| | || |||||
Sbjct 1072 AAGGAAGAAGATGGATTTGACTGCAGAGGAGCTCAAGGAAGAGAAGGACTTGGCGTACTC 1131
Query 1081 ATGCCTCTCTTAAACC 1096
||||||||||||||||
Sbjct 1132 ATGCCTCTCTTAAACC 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5