BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494737 Length=1211 Score E Sequences producing significant alignments: (Bits) Value AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-... 1565 0.0 AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor sm... 614 8e-175 > AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:17169283-17171704 REVERSE LENGTH=1495 Length=1495 Score = 1565 bits (847), Expect = 0.0 Identities = 959/1014 (95%), Gaps = 4/1014 (0%) Strand=Plus/Plus Query 1 ctctctctctctctcCGGCTCACACGAGTCGCTAATCAAATAACCCTAAACCCTAGATCG 60 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2 CTCTCTCTCTCTCTCCGGCTCACACGAGTCGCTAATCAAATAAACCTAAACCCTAGATCG 61 Query 61 TGATCGGAAACAACACCTCCTCGTCGGCGATAGCTTCTCTTCCACTAAAAGCAACTCCTC 120 ||||||| ||| |||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 62 TGATCGGCAACGGCACCTCCTCGTCGGCGATAGCTTCTCTTCCACTAAAAGAAAATCCTC 121 Query 121 TTCGGTGAAAATGGCAGAGCATTTGGCTTCAATCTTTGGTACTGAAAAAGATAGAGTGAA 180 |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 122 TTCGGTGAGAATGGCAGAGCATTTAGCTTCAATCTTTGGTACTGAAAAGGATAGAGTGAA 181 Query 181 TTGTCCGTTTTACTTTAAGATTGGTGCTTGTCGTCACGGTGACCGGTGCTCACGGCTTCA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 TTGTCCGTTTTACTTTAAGATTGGTGCTTGTCGTCACGGTGACCGGTGCTCACGGCTTCA 241 Query 241 TAACCGTCCCACTATCTCCCCGACGCTCCTTCTCTCGAACATGTATCAGAGACCTGACAT 300 |||||||||||| ||||| |||||||| || |||||||||||||| |||||||||||||| Sbjct 242 TAACCGTCCCACCATCTCGCCGACGCTTCTCCTCTCGAACATGTACCAGAGACCTGACAT 301 Query 301 GATAACTCCAGGTGTGGATCCTCAGGGTCAGCCATTAGACCCGAGTAAGATCCAAGACCA 360 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 302 GATAACTCCAGGTGTGGATCCTCAGGGACAGCCGTTAGACCCGAGTAAGATCCAAGACCA 361 Query 361 CTTTGAGGATTTCTATGAAGATATTTTCGAAGAACTTAACAAGTTTGGTGAAGTGGAGAG 420 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 362 CTTTGAGGATTTCTACGAAGATATTTTCGAAGAACTCAACAAGTTTGGTGAAGTGGAGAG 421 Query 421 TCTCAATGTTTGTGATAACCTTGCTGATCATATGATTGGGAATGTGTATGTTCTGTTTAA 480 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 422 TCTCAATGTTTGTGACAATCTTGCTGATCATATGATTGGGAATGTGTATGTTCTGTTTAA 481 Query 481 GGAGGAGGATCACGCTGCTGCTGCGTTGCAGGCTTTGCAAGGGAGGTTTTACTCTGGACG 540 ||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || || || Sbjct 482 GGAGGAGGATCACGCAGCTGCTGCGTTGCAGGCTTTGCAGGGGAGATTTTATTCCGGTCG 541 Query 541 TCCTATCATTGCTGATTTCTCTCCTGTGACGGATTTCCGGGAAGCTACTTGTAGGCAGTA 600 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 542 TCCTATCATTGCTGATTTCTCTCCTGTGACGGATTTTAGGGAAGCTACTTGTAGGCAGTA 601 Query 601 TGAAGAAAACAGTTGTAACCGTGGTGGGTATTGTAATTTCATGCATGTGAAGCAGATTTC 660 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 602 TGAAGAAAACAGCTGTAACCGTGGTGGGTACTGTAATTTCATGCATGTGAAGCAGATTTC 661 Query 661 GAGGGAGCTTAGGAGGAAATTGTTTGGGAGGTATCGTCGGTCATACCGCCGGGGAAGTAG 720 ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || Sbjct 662 GAGGGAGCTTAGGAGGAAATTGTTTGGGAGGTATCGTCGTTCATACCGTCGGGGAAGCAG 721 Query 721 AAGCCGGAGCAGGAGTATAAGCCCTCGACGCAAGAGAGAGCATTCGCGGGAGCGAGAGAG 780 ||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 722 AAGTCGAAGCAGGAGTATAAGCCCTCGACGTAAGAGAGAGCATTCGCGAGAGCGAGAGAG 781 Query 781 AGGGGAT-TTGAGGGACCGTGACCGCCATGGAAATGGGAAACGAAGCAGTGATAGATCAG 839 |||||| || |||||||||||||| ||||||||||||||| | |||||||||||||||| Sbjct 782 AGGGGACGTT-AGGGACCGTGACCGGCATGGAAATGGGAAAAGGAGCAGTGATAGATCAG 840 Query 840 AGAGGCATGATCGAGATGGTGGTGGAAGAAGGAGACATGGAAGCCCGAAACGGAGCAGAA 899 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 841 AGAGGCATGATCGGGATGGTGGTGGAAGGAGGAGACATGGAAGCCCGAAACGGAGCAGAA 900 Query 900 GTCCACGAAATGTGAGAGAAGGAAGTGAGGAAAGGAGGGCAAGAATTGAGCAATGGAACC 959 | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 901 GCCCACGAAATGTGAGAGAAGGAAGCGAGGAAAGGAGGGCGAGAATTGAGCAATGGAACC 960 Query 960 GAGAACGCGATGAGGGAGTTTAAGAGTAAT-GTTTGGACTGATTGCTTCAGAAA 1012 ||||||| |||||||||||||||| ||| | |||||| |||||| ||||| ||| Sbjct 961 GAGAACGTGATGAGGGAGTTTAAGGGTA-TCGTTTGGGCTGATTACTTCATAAA 1013 > AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor small subunit, putative | chr1:9614551-9616357 FORWARD LENGTH=1405 Length=1405 Score = 614 bits (332), Expect = 8e-175 Identities = 517/607 (85%), Gaps = 10/607 (2%) Strand=Plus/Plus Query 131 ATGGCAGAGCATTTGGCTTCAATCTTTGGTACTGAAAAAGATAGAGTGAATTGTCCGTTT 190 ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| || ||| Sbjct 200 ATGGCGGAGCATTTGGCTTCAATCTTTGGTACTGAGAAAGACAGAGTGAATTG-CCCTTT 258 Query 191 -TACTTTAAGATTGGTGCTTGTCGTCACGGTGACCGGTGCTCACGGCTTCATAACCGTCC 249 ||||| |||||||| ||||| ||||| |||||||||||||| || ||||| |||||||| Sbjct 259 CTACTTCAAGATTGGCGCTTGCCGTCATGGTGACCGGTGCTCGCGTCTTCACAACCGTCC 318 Query 250 CACTATCTCCCCGACGCTCCTTCTCTCGAACATGTATCAGAGACCTGACATGATAACTCC 309 || |||||||| || |||||||| || |||||||| || || ||||||||||| || || Sbjct 319 TACCATCTCCCCAACACTCCTTCTTTCAAACATGTACCAAAGGCCTGACATGATTACCCC 378 Query 310 AGGTGTGGATC-CTCAGGGTCAGCCATTAGACCCGAGTAAGATCCAAGACCACTTTGAGG 368 ||||| || | ||||||| || ||| | |||||| ||||||| || || |||||||||| Sbjct 379 TGGTGTTGA-CGCTCAGGGCCAACCACTCGACCCGCGTAAGATTCAGGAGCACTTTGAGG 437 Query 369 ATTTCTATGAAGATATTTTCGAAGAACTT-AACAAGTTTGGTGAAG-TGGAGAGTCTCAA 426 |||||| ||| ||| |||| || || ||| | |||||||| | || | ||||| ||||| Sbjct 438 ATTTCTTTGAGGATCTTTTTGAGGAGCTTGGA-AAGTTTGGCG-AGATAGAGAGCCTCAA 495 Query 427 TGTTTGTGATAACCTTGCTGATCATATGATTGGGAATGTGTATGTTCTGTTTAAGGAGGA 486 ||||||| ||||||||||| || |||||||| || || ||||||| ||||||||| || Sbjct 496 CATTTGTGACAACCTTGCTGACCACATGATTGGCAACGTATATGTTCAGTTTAAGGAAGA 555 Query 487 GGATCACGCTGCTGCTGCGTTGCAGGCTTTGCAAGGGAGGTTTTACTCTGGACGTCCTAT 546 |||||| ||||| ||||| ||||||||| ||||||| ||||| || || |||||||| || Sbjct 556 GGATCAGGCTGCAGCTGCTTTGCAGGCTCTGCAAGGTAGGTTCTATTCAGGACGTCCCAT 615 Query 547 CATTGCTGATTTCTCTCCTGTGACGGATTTCCGGGAAGCTACTTGTAGGCAGTATGAAGA 606 ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| Sbjct 616 CATTGCTGATTTCTCTCCTGTGACGGATTTCCGCGAAGCCACGTGTAGGCAGTATGAAGA 675 Query 607 AAACAGTTGTAACCGTGGTGGGTATTGTAATTTCATGCATGTGAAGCA-GATTTCGAGGG 665 ||||| || |||||||||||||| |||||||||||||||||||||| | ||||||||| Sbjct 676 AAACAACTGCAACCGTGGTGGGTACTGTAATTTCATGCATGTGAAGCTTG-TTTCGAGGG 734 Query 666 AGCTTAGGAGGAAATTGTTTGGGAGGTATCGTCGGTCATACCGCCGGGGAAGTAGAAGCC 725 | || ||||| ||| | |||||||| ||||| || ||||||||| | |||||||||||| Sbjct 735 AACTAAGGAGAAAACTCTTTGGGAGATATCGGCGATCATACCGCAGAGGAAGTAGAAGCA 794 Query 726 GGAGCAG 732 ||||||| Sbjct 795 GGAGCAG 801 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59487645825 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5