BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494739
Length=1714
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42810.1 | Symbols: ATIPK1, IPK1 | inositol-pentakisphosphat... 2388 0.0
AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-... 252 1e-65
> AT5G42810.1 | Symbols: ATIPK1, IPK1 | inositol-pentakisphosphate
2-kinase 1 | chr5:17166818-17169459 FORWARD LENGTH=1733
Length=1733
Score = 2388 bits (1293), Expect = 0.0
Identities = 1589/1730 (92%), Gaps = 27/1730 (2%)
Strand=Plus/Plus
Query 1 AATTTTGACTCTCCTCCAAAACAGAGAGACAAATTAAGCCAAGCGTCATTGTTCTAGTCC 60
||||||||||||||||| ||||||||||||||| ||||||||||||| ||| | ||||||
Sbjct 15 AATTTTGACTCTCCTCC-AAACAGAGAGACAAAGTAAGCCAAGCGTCTTTGGTGTAGTCC 73
Query 61 ACTACCACGTTTAAGCTCGACGCATAGAGAGAAGGATCCTTCAAAGCTCTCCTTCGTCTT 120
|| ||||||||| ||||||||||| ||||||||| || ||||||||||||||||| ||||
Sbjct 74 ACCACCACGTTTGAGCTCGACGCAGAGAGAGAAGAATACTTCAAAGCTCTCCTTCTTCTT 133
Query 121 CTTCAACTACTAGAAAACGAACTTCATTTTCGATTCAATTGCATTGCGTTAGCGAAATTC 180
||||||| ||||| || | |||| || || ||||||||||||||||||||| ||||||
Sbjct 134 CTTCAACCACTAG--AA--ATCTTCGTTCTCTATTCAATTGCATTGCGTTAGCAAAATTC 189
Query 181 TGGTG-ATTCGATTTGATCAGATCTT--C--GA--T---TTTTCAGAATCGAAGAATTTT 230
||||| ||| |||||||||||||||| | || | |||| | ||||||||||||||
Sbjct 190 TGGTGAATT-GATTTGATCAGATCTTCGCTTGATTTCGATTTTAAAAATCGAAGAATTTT 248
Query 231 -AATCGGATGGAGATGGTTTTGGAAGAGAAAGATGCATCTGATTGGATTTATAGAGGAGA 289
|||| ||||||||| ||||||| |||||||||||||| ||||||||||| ||||| ||
Sbjct 249 GTATCGCATGGAGATGATTTTGGAGGAGAAAGATGCATCAGATTGGATTTACAGAGGCGA 308
Query 290 AGGTGGTGCTAATCTCGTTCTTGCTTACGCTGGATCTTCTCCGCTTTTTGTGGGGAAAGT 349
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 309 AGGTGGTGCCAATCTCGTTCTTGCTTACGCTGGATCTTCTCCACTTTTTGTTGGGAAAGT 368
Query 350 GATTCGTATACAGAAGGCTCGGAGGAATGATAAAGCACAT-ATGACTGCGAATGGCGTTG 408
||||||||||||||||||||||||||||||||||||| || | || ||||||||| ||||
Sbjct 369 GATTCGTATACAGAAGGCTCGGAGGAATGATAAAGCA-ATCAAGAATGCGAATGGTGTTG 427
Query 409 TTTCGGTTTTAACAAGCGATGAGCAACTTCTGTGGAGGGAAAACAAGGAGCTTATTTCAT 468
||||||||||||||||||||||||||| ||| ||||| |||||||| ||||| |||||||
Sbjct 428 TTTCGGTTTTAACAAGCGATGAGCAACATCTATGGAGAGAAAACAATGAGCTGATTTCAT 487
Query 469 CACCGAACAAGGAAGTTCTTGAACAGAGATATGTTAAGCATGTGATTATTCCACTCTTGG 528
|||| |||||||||||||||||||| |||||||||||| ||||||| || ||||||||||
Sbjct 488 CACCAAACAAGGAAGTTCTTGAACAAAGATATGTTAAGAATGTGATCATCCCACTCTTGG 547
Query 529 GTCCTAAACATGTTGATGCAGGAGTACGTGTTTCTGTGTCCAAGGAATTTCTTGAGTGTG 588
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 548 GTCCTAAACATGTTGATGCTGGAGTACGTGTTTCTGTGTCCAAGGAGTTTCTTGAGTGTG 607
Query 589 TTGATAAGAAAGTTACTAAGCAGCGTCCGCTATGGCGTGTTAATGCAGCACATGTTGATA 648
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 608 TTGATAAGAAAGTAACTAAGCAGCGTCCGCTATGGCGTGTTAATGCAGCAAATGTTGATA 667
Query 649 CCAGTCATGATTCTGCCCTTATTTTGAATGATCATTCACTTTTCTCTCATGGTATTTTTA 708
| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||
Sbjct 668 CGAGTCATGATTCTGCCCTTATATTGAATGATCATTCACTTTTTTCTCAAGGTATTTCTA 727
Query 709 GCATTGGTGATTGCATTAGTGTTGAAATTAAGCCCAAATGCGGATTTCTTCCAACCTCAA 768
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 728 GCGGTGGTGATTGCATTAGTGTTGAAATAAAGCCCAAATGCGGATTTCTTCCAACCTCAA 787
Query 769 GGTTCATATGTAAAGAAAACATGCTGAAAACAAGCGTAAGCCGTTTCAAAATGCATCAAC 828
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 788 GGTTCATAGGTAAAGAAAACATGCTCAAAACAAGCGTAAGCCGTTTCAAAATGCATCAAC 847
Query 829 TTTTGAAGTTGGAATATAACGAGATATCTGAAGAAAGTGAATATGATCCTCTTGATCTGT 888
| || |||||||||||||||||||||||||||||||| || || |||||||||||||| |
Sbjct 848 TCTTAAAGTTGGAATATAACGAGATATCTGAAGAAAGCGAGTACGATCCTCTTGATCTCT 907
Query 889 TCTCTGGATCTAAAGAGAGAGTTTTGGAAGCTATAAAAGCCTTATATTCTACTCCCCAAA 948
|||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| ||||
Sbjct 908 TCTCTGGATCAAAAGAGAGTGTTTTGGAAGCTATAAAAGCTTTATATTCCACTCCTCAAA 967
Query 949 ACAATTTCCGCGTATTCTTGAATGGTTCTCTCATATTAGGGGGTTCAGGTGAAAGCACAG 1008
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 968 ACAATTTCCGCGTATTCTTGAATGGTTCTCTCATATTAGGGGGTTCAGGTGAAAGCACCG 1027
Query 1009 GGAGAACCAGCCCCGAGATCGGGTATGCCTTTGAGGATACTCTCAAAGGCTTCATTCAAT 1068
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1028 GGAGAACCAGCCCCGAAATCGGGTATGCCTTTGAGGATGCTCTCAAAGGCTTCATTCAAT 1087
Query 1069 CAGAAGACGGTCACAGGACTA-AATGCTTTCTACAGCTAGTATCTGACGCTGTCTATGGC 1127
||||||||||||| ||||| | | ||||||||||| ||||||||||||||||||||||||
Sbjct 1088 CAGAAGACGGTCATAGGAC-AGAGTGCTTTCTACAACTAGTATCTGACGCTGTCTATGGC 1146
Query 1128 TCAGGAGTGCTCGATAGACTTCTTGAAATTCAGAAGCTAGACAAATTAGACATTGAAGGA 1187
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 TCAGGAGTTCTTGATAGACTTCTTGAAATTCAGAAGCTAGACAAATTAGACATTGAAGGA 1206
Query 1188 TCGATTCATTCTTATTACGATATTA-TCAACCAGCCTTGTGCTATATGTAAAGAGAG-TG 1245
|||||||||| ||||||||| ||| |||||||||||||| ||||||||||||| || |
Sbjct 1207 GCGATTCATTCGTATTACGAT-TTAATCAACCAGCCTTGTCCTATATGTAAAGA-AGGTA 1264
Query 1246 GGCCACTGGAGGCATACTCATCTCTACATACTTTACCGTTAGATGAAAGTTTAAAGATCG 1305
|||||||||||| | | ||||||||| ||||||| ||||||||||| || ||||| |
Sbjct 1265 AGCCACTGGAGGCGGAATTGTCTCTACATGCTTTACCTTTAGATGAAAGCTTGAAGATTG 1324
Query 1306 TGAAGGACTATCTGGTAGCTGCAACTGCTAAAGACTGTAGTATTATGATCAGTTTTCAAT 1365
||||||| ||| || ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1325 TGAAGGAGTATTTGATAGCTGCAACTGCCAAAGACTGTAGTATTATGATCAGTTTTCAAT 1384
Query 1366 CAAGGAGTGCTTGGGATTCAGAACCTTCTTGTGATTACATCTCTCTAAAACCGACCAATC 1425
|||||| |||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 1385 CAAGGAATGCTTGGGATTCAGAACCCTCGGGTGATTACGTCTCTCTAAAACCGACCAATC 1444
Query 1426 AAACATTTGATTACAAGGTACATTTCATTGATCTAAGCCTGAAACCACTAAAGAGAATGG 1485
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1445 AAACGTTTGATTACAAGGTACATTTCATTGATCTAAGCCTGAAACCACTTAAGAGAATGG 1504
Query 1486 AGTCATACTACAAACTGGATAAGAAGATAATTAGCTTCTACAATCGGAAGCAGAA-GCTC 1544
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1505 AGTCATACTACAAATTGGATAAGAAGATAATTAGCTTTTACAATCGGAAGCAGAAAGC-C 1563
Query 1545 GAAAACGTGGCAGAACAAATCGGCGACTCAAAACCTTCGCACAGCTAAGTCATGGATCGT 1604
|||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||||
Sbjct 1564 GAAAACACGGCAGAACAAATCGGCAACTCAAAACCTTCCCACAGCTAAGTCATGTATCGT 1623
Query 1605 CTCAATACCACTAGCTGttttttttttCGTTACTGTTGTTGTAAAACATAATAAAGAAAG 1664
|||||||||||||||| | |||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1624 CTCAATACCACTAGCTCTCTTTTTTTTGGTTACTGTTGTTGTAGAACATAATAAAGAAAG 1683
Query 1665 CCCTAAAAGATGAATGTTCATTTCCTAAACTTGAAATTTATTGGAACTAT 1714
|||||||||||||||||||||||| ||||||| |||||| ||||||||||
Sbjct 1684 CCCTAAAAGATGAATGTTCATTTCTTAAACTTAAAATTTGTTGGAACTAT 1733
> AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x5-C-x3-H
type family protein | chr5:17169283-17171704 REVERSE
LENGTH=1495
Length=1495
Score = 252 bits (136), Expect = 1e-65
Identities = 163/176 (93%), Gaps = 1/176 (1%)
Strand=Plus/Minus
Query 1539 AAGCTCGAAAACGTGGCAGAACAAATCGGCGACTCAAAACCTTCGCACAGCTAAGTCATG 1598
|||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1493 AAGC-CGAAAACACGGCAGAACAAATCGGCAACTCAAAACCTTCCCACAGCTAAGTCATG 1435
Query 1599 GATCGTCTCAATACCACTAGCTGttttttttttCGTTACTGTTGTTGTAAAACATAATAA 1658
||||||||||||||||||||| | |||||||| ||||||||||||||| ||||||||||
Sbjct 1434 TATCGTCTCAATACCACTAGCTCTCTTTTTTTTGGTTACTGTTGTTGTAGAACATAATAA 1375
Query 1659 AGAAAGCCCTAAAAGATGAATGTTCATTTCCTAAACTTGAAATTTATTGGAACTAT 1714
|||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||
Sbjct 1374 AGAAAGCCCTAAAAGATGAATGTTCATTTCTTAAACTTAAAATTTGTTGGAACTAT 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84738519960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5