BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494744
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42765.1 | Symbols: | INVOLVED IN: biological_process unkno... 1216 0.0
> AT5G42765.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: thylakoid, chloroplast thylakoid membrane,
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine
translocation pathway, signal sequence (InterPro:IPR006311);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr5:17150238-17151681 REVERSE LENGTH=997
Length=997
Score = 1216 bits (658), Expect = 0.0
Identities = 789/851 (93%), Gaps = 14/851 (2%)
Strand=Plus/Plus
Query 1 TGTTAAGCCATGGCTCGTCTTATCCCAATTTCTCAACCTTTCTTCTCTTCAAACACTAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 32 TGTTAAGCCATGGCTCGTCTTATCCCAATTTCTCAACCTTTCTTCTCTTCAAACACTAAA 91
Query 61 CCT-CA--ACCACCACCAATCACCGCCGCACAAATCTCCGACCACCCACCGC-GCATTAt 116
||| || ||||||||||||| |||||||||||||||||||||||| || | | |||||
Sbjct 92 CCTCCACCACCACCACCAATCGCCGCCGCACAAATCTCCGACCACCTGCCACAG-ATTAT 150
Query 117 ctctcgtcgaga---cacctttcttctctcctccgccgcttctcttctcctctcactctc 173
|||||| ||||| |||| ||||||||||||||||| |||||||||||||| | |||||
Sbjct 151 CTCTCGCCGAGACGCCACCGTTCTTCTCTCCTCCGCCACTTCTCTTCTCCTCACTCTCTC 210
Query 174 tccAACCAATCCCGCTTTTGCCTTCTCCTTAGGAATCTCAGGACCTAAAGAGTGGCTTAA 233
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 211 CCCCACCAATCCCGCTTTCGCCTTCTCCTTAGGAATCTCAGGACCTAAAGAGTGGCTTAA 270
Query 234 AGAACAGAAGAAGAAGTCGTCAAGATTCTTACTCGCTCCCATTGATGCATCTCGTGAAGC 293
||| |||||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||
Sbjct 271 AGATCAGAAGAAGAAGTCTTCAAGATTCTTACTTGCTCCCATTGATGCAACTCGTCAAGC 330
Query 294 TCTCCGATCTGCTTACCTTTCGTTAACTAGTGAATCTGATTATACGGAGAAAGATTTGGA 353
||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 331 TCTTCAATCTGCTTATCTTTCGTTAACTAGTGAATCTGATTATACAGAGAAAGATTTGGA 390
Query 354 GAATCTTCAGAATTTGTTTAAGTCTTCTGCTAGAGATTGTGTTCCTAAAGAGAGAAGTTC 413
|||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 391 GAATCTGCAGAATCTGTTTAAGTCTTCTGCAAGAGATTGTGTTCCTAAAGAAAGAAGCTC 450
Query 414 TCTTGTTGATTTTCAGTCTAAATCTGGAGTTGAGGTTTATACATTTAAGCTTGTTGTGAA 473
||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 451 TCTTGTTGATTTTCAATCTAAATCCGGAGTTGAGGTTTGTACATTTAAGCTTGTTGTGAA 510
Query 474 GAATGCTGCTTCATTACTTGATGATAAGGATCCAGTCAAATTAGAAGCAGAGAATATACT 533
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 511 GAATGCTGCTTCATTACTTGATGATAAGGATCCAGTTAAATTAGAAGCAGAGAATATACT 570
Query 534 TGATGATCTGGTTAGGTCTTTCGGTTCCCTTATCGTGTTGACGAATGGGGTTGATATGAA 593
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TGATGATCTTGTTAGGTCTTTCGGTTCCCTTATCGTGTTGACGAATGGGGTTGATATGAA 630
Query 594 TCTTCCTTCTGATAGAAAAAAGGTTGCAGATGCGGTTACGGAGGCTATCTCTTATCTTGA 653
||||||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||||
Sbjct 631 TCTTCCTTCTGATAGAAAAAAAGTTGCAGATGGGGTTACAGAGACTATCTCTTATCTTGA 690
Query 654 CAAATTTGAGAAGGGTGTCAAGGACTGCCTTGAGATCTGAGATGAAGTCTAGTtctctct 713
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 691 CAAATTTGAGAAGGGTGTCAAAGACTGTCTTGAGATTTGAGATGAAGTCTAGTTCTCTCT 750
Query 714 tc-tct-cttctTGTGAG--CATTATGGCTAAATAGGTGTACCAACTTTTGTTACAAGTG 769
|| | | |||||||||| |||||||||| ||||||||||||||||||| |||||| ||
Sbjct 751 TCCTTTTCTTCTTGTGAAATCATTATGGCTGAATAGGTGTACCAACTTTTTTTACAACTG 810
Query 770 TATAAGTCAGAGACGATATCTCGTTCTATATATGAATATAATCATATGCTTGATGCTGAG 829
| ||||| ||||||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 811 TCTAAGTGAGAGACGATATCTCGTTCTATAT--GAATATACTCTTATGCTTGATGCTGAG 868
Query 830 CCTCATTCATC 840
| |||||||||
Sbjct 869 CTTCATTCATC 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5