BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494776
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42570.1 | Symbols: | B-cell receptor-associated 31-like | ... 1157 0.0
> AT5G42570.1 | Symbols: | B-cell receptor-associated 31-like
| chr5:17021310-17022583 REVERSE LENGTH=892
Length=892
Score = 1157 bits (626), Expect = 0.0
Identities = 789/865 (91%), Gaps = 21/865 (2%)
Strand=Plus/Plus
Query 1 ATTGACCGACACAACAACACGTTACGTTCTCTCTCCTTTTTCTTCTTCTCCGATCATCAA 60
||||||||||||||||| || |||||||||||| |||||||||||||||| |||||
Sbjct 1 ATTGACCGACACAACAA-ACAACACGTTCTCTCTCATTTTTCTTCTTCTCCG---ATCAA 56
Query 61 TCTAGGGTTTACTCTCACCGGCGACGAACAATGATCCACCTCCTTTACACAGTGATCTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 TCTAGGGTTTACTCTCACCGGCGACGAACAATGATCCACCTCCTTTACACAGTGATCTTC 116
Query 121 GCCGAAATGGCGTTAATCCTCCTTCTCCTCTTCAAAACACCTCTCCGAAAGCTAATCATC 180
||||||||||| | ||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 117 GCCGAAATGGCACTGATCCTTCTCCTCCTCTTCAAAACTCCTCTCCGAAAGCTAATCATC 176
Query 181 CTAACGTTCGATCGAATCAAACGTGGCCGTGGTCCCGTCGTCGTGAAAACCATCGGAATT 240
|| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 177 CTCACCTTCGATCGAATCAAACGTGGCCGTGGTCCCGTCGTCGTCAAAACCATAGGAACC 236
Query 241 ACCGTGTTCATCGTTCTGTTGTCGAGTATCTACAGTTTGGTCAATATCCAACGCCGATCT 300
||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 237 ACCGTATTCGTCGTTCTCTTGTCGAGTATCTACAGTTTGGTTAATATCCAACGCCGATCT 296
Query 301 GAAGATGGTGCTGTTCTTAATCCTACTGATCAAGTTCTTGCCTCTAAGCATCTCCTCGAA 360
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct 297 GAAGATGGTGCTGTTCTTAATCCCACTGATCAAGTCCTTGCGTCTAAGCATCTTCTCGAA 356
Query 361 GCTTCTCTTATGGGATTTGTGTTGTTTCTCTCGCTTATGATTGATCGGCTACACCATTAC 420
|||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 357 GCTTCTCTTATGGGGTTTGTGTTGTTTCTCTCGCTTATGATTGATAGACTACACCATTAC 416
Query 421 ATCAGAGAGCTTCGGTTGTTGAGGAAGACAATGGAGACTGCGAAGAAGCAGAACAGAGGT 480
|| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 417 ATTAGAGAGCTTCGTTTGTTGAGGAAGACAATGGAGACTGCAAAGAAGCAGAACAGAGGT 476
Query 481 TTTGAGGATGGAAAAAACACAAGTGGGGAGGAAGTGAAAGCAATTGGGGAAGAAATCGCG 540
||||||||||| |||| |||||||||||||||||||||||| | |||||||| ||||||
Sbjct 477 TTTGAGGATGGGAAAACCACAAGTGGGGAGGAAGTGAAAGCGCTCGGGGAAGAGATCGCG 536
Query 541 GCGTTAAAGGCGAAGATAAAGACATTGGAATCGGAGAGTGAAAGCAAAGGCAAAGAACTA 600
|||||||| |||||||||||||| || ||||||||||||||||| |||||||||||| |
Sbjct 537 GCGTTAAAAGCGAAGATAAAGACGTTAGAATCGGAGAGTGAAAGTAAAGGCAAAGAATTG 596
Query 601 AAAGGGGCACAAGGTGAAACAGAGGCTCTGAGAAAGCAAGCTGATGGGTTTCTTATGGAG 660
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 597 AAAGGTGCACAAGGTGAAACAGAGGCTTTGAGAAAGCAAGCTGATGGGTTTCTTATGGAG 656
Query 661 TATGATAGGCTT-CTTGAGGATAATCAGAATTTGAGGAACCAGTTGGAGTCTGTTGGCCA 719
||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 657 TATGATAGG-TTGCTTGAGGATAATCAGAATTTGAGGAACCAGTTGGAGTCTATTGGGCA 715
Query 720 CAGTCCTGAGGGAAAGAAGGGTATGTAAAATTGAGCAAAGAAAAAGAAAACTAAGGATTC 779
||||||||||||||||||||||||||| ||| ||| || ||||||||||
Sbjct 716 TAGTCCTGAGGGAAAGAAGGGTATGTAA----GAGTAAA-AA--------CTAAGGATTC 762
Query 780 TGTTTTGTAGAGAACAAAGTAACTTTAGGAAATGTGGCTTTGCTGATTTTTGCTTTATGT 839
|||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||
Sbjct 763 TGTTTTGTAGAGAACAAAGTAACTATAGGAAATGTGGTTTTACTGATTTTTGCTTCATGT 822
Query 840 ATTATGCTAAAA-CGTCTCATCTTT 863
| ||||| || | |||||| |||||
Sbjct 823 AATATGC-AATATCGTCTCCTCTTT 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42096215186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5