BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494777
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42650.1 | Symbols: AOS, CYP74A, DDE2 | allene oxide synthas... 2495 0.0
> AT5G42650.1 | Symbols: AOS, CYP74A, DDE2 | allene oxide synthase
| chr5:17097595-17099395 REVERSE LENGTH=1801
Length=1801
Score = 2495 bits (1351), Expect = 0.0
Identities = 1523/1606 (95%), Gaps = 11/1606 (1%)
Strand=Plus/Plus
Query 1 TCGCCACTGTTTCGAAGAGATGGCTTCTGTTTCAACGCCTTTTCCGATTTCTCTCCACCC 60
|||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 18 TCGCCACTGTTTCGAATAGATGGCTTCTATTTCAACCCCTTTTCCGATTTCTCTCCACCC 77
Query 61 AAAGATCGTACGATCAAAGCCGTTGAAATTTCGAGTTTTGACCCGTCCGATCAAAGCTTC 120
||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 78 AAAAACCGTACGATCAAAGCCGTTGAAATTCCGAGTTTTGACCCGTCCGATCAAAGCTTC 137
Query 121 CGGGTCAGAAACACCTCCTGATCTAGCCGTAGCGACACGAACCGGGTCAAAAGATCTTCC 180
|||||||| || | ||||||||||| ||||||||||||||||||| || |||||||| ||
Sbjct 138 CGGGTCAG-AA-A-CTCCTGATCTAACCGTAGCGACACGAACCGGATCCAAAGATCTCCC 194
Query 181 GATCCGGAACATACCGGGAAACTACGGTTTACCAATCGTTGGACCAATCAAAGACCGTTG 240
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 195 GATCCGAAACATACCGGGAAACTACGGTTTACCAATCGTAGGACCAATCAAAGACCGTTG 254
Query 241 GGATTACTTTTACGACCAAGGAGCTGAAGAGTTCTTCAAATCAAGAATCCGTAAATACAA 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 255 GGATTACTTTTACGACCAAGGAGCTGAAGAGTTCTTCAAATCACGAATCCGTAAATACAA 314
Query 301 TTCAACCGTGTACCGAGTCAACATGCCACCGGGAGGTTTTATCGCCGAGAATCCACAAGT 360
|| || |||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 315 CTCCACGGTGTACAGAGTCAACATGCCACCGGGAGCTTTTATCGCCGAGAATCCACAAGT 374
Query 361 TGTGGCTTTACTCGACGGTAAAAGCTTCCCGGTTTTATTCGATGTCGATAAAGTCGAAAA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 CGTGGCTTTACTCGACGGTAAAAGCTTCCCGGTTTTATTCGATGTCGATAAAGTCGAAAA 434
Query 421 GAAAGATCTCTTCACCGGTACTTACATGCCTTCAACAGACCTCACTGGCGGTTACCGTAT 480
||||||||| |||||||||||||||||||| ||||| || || || || || ||||||||
Sbjct 435 GAAAGATCTTTTCACCGGTACTTACATGCCGTCAACGGAACTAACCGGAGGCTACCGTAT 494
Query 481 CCTCTCTTACCTCGATCCGTCCGAGCCTAAACACGAAAAGCTTAAATCAT-TACTTTTCT 539
|||||| ||||||||||| || |||||||||||||||||||| ||| || | |||||||
Sbjct 495 CCTCTCGTACCTCGATCCATCGGAGCCTAAACACGAAAAGCTCAAA-AATCTCCTTTTCT 553
Query 540 TCCTCCTCAAGTCATCTCGAAACCGGATCTTCCCTGAGTTTCAAGCTACTTACTCCGAGC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TCCTCCTCAAGTCATCTCGAAACCGGATCTTCCCTGAGTTTCAAGCTACTTACTCCGAGC 613
Query 600 TCTTT-GATTCTTTAGAGAAAGAGCTTTCCCTTAAAGGAAAAGCCGATTTCGGCGGTTCC 658
| ||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 614 T-TTTCGATTCTTTGGAGAAAGAGCTTTCCCTTAAAGGGAAAGCGGATTTCGGCGGTTCC 672
Query 659 AGTGACGGAACCGCCTTTAATTTTTTGGCTCGAGCTTTCTACGGGACGAATCCCGTAGAT 718
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 673 AGCGACGGAACCGCCTTTAATTTCTTGGCTCGAGCTTTCTACGGGACGAATCCCGCAGAT 732
Query 719 ACAAAGCTCAAAGCCGACGCGCCCGGTTTGATCACTAAATGGGTTTTATTCAATCTCCAT 778
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 733 ACAAAGCTCAAAGCCGACGCTCCGGGTTTGATCACTAAATGGGTTTTATTCAATCTCCAT 792
Query 779 CCGTTACTCTCTCTTGGTTTACCGAGGA-TTATAGAAGATCCTCTCCTCCATACATTTAG 837
|| ||||||||| |||||||||||| || |||||||||| |||||| |||||||||||||
Sbjct 793 CCATTACTCTCTATTGGTTTACCGA-GAGTTATAGAAGAACCTCTCATCCATACATTTAG 851
Query 838 TCTACCACCGGCGTTAGTCAAATCTGATTACCAGAGACTCTACGAGTTTTTCTTCGAATC 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 852 TCTACCACCGGCGTTAGTCAAATCTGATTACCAGAGACTCTACGAGTTTTTCTTAGAATC 911
Query 898 CGCCGGTGAAATTCTCGTTGAAGCCGATAAATTGGGTATCTCACGAGAAGAAGCGACTCA 957
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 912 CGCCGGTGAGATTCTCGTTGAAGCCGATAAATTGGGTATCTCACGAGAAGAAGCTACTCA 971
Query 958 CAATCTTCTCTTCGCCACGTGCTTCAACACGTGGGGTGGGATGAAGATCCTT-TTCCCGA 1016
|||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 972 CAATCTTCTCTTCGCCACGTGCTTCAACACGTGGGGTGGGATGAAGAT-TTTGTTTCCGA 1030
Query 1017 ATATGGTTAAACGGATCGGGCGGGCGGGTCATAAAGTCCATAACCAATTAGCGGAGGAGA 1076
||||||||||||| |||||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct 1031 ATATGGTTAAACGTATCGGGCGGGCGGGTCATCAAGTTCATAACCGATTAGCGGAGGAGA 1090
Query 1077 TTAGATCTGTGATTAAATCCAACGGTGGAGAACTCACGATGGGAGGGATTGAGAAAATGG 1136
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1091 TTAGATCTGTGATTAAATCCAACGGCGGAGAACTCACGATGGGAGCGATTGAGAAAATGG 1150
Query 1137 AGCTAACCAAATCTGTGGTTTACGAATGTCTCCGGTTTGAACCACCGGTTCCGGCGCAAT 1196
|| |||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1151 AGTTAACCAAATCAGTGGTTTACGAATGTCTCCGGTTTGAACCACCGGTTACGGCTCAAT 1210
Query 1197 ACGGTAGAGCGAAGAAAGATCTGGTTATCGAAAGCCACGACGCGGCGTTTAAAGTCAAAG 1256
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 ACGGTAGAGCGAAGAAGGATCTGGTTATCGAAAGCCACGACGCGGCGTTTAAAGTCAAAG 1270
Query 1257 CCGGTGAAATGCTTTATGGTTATCAACCGTTGGCGACGAGAGATCCGAAGATTTTTGATC 1316
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 CCGGTGAAATGCTTTACGGTTATCAACCGTTGGCGACGAGAGATCCGAAGATTTTTGATC 1330
Query 1317 GAGCGGATGAGTTTGTACCGGAGAGATTCGTCGGAGAAGAAGGAGAGAAGCTGTTGCGGC 1376
| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1331 GGGCGGATGAGTTTGTGCCGGAGAGATTCGTCGGAGAAGAAGGAGAGAAGCTTTTGAGGC 1390
Query 1377 ATATATTGTGGTCGAATGGACCGGAGACGGAGACTCCGACGGTGGGGAATAAACAATGCG 1436
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 ATGTGTTGTGGTCGAATGGACCGGAGACGGAGACTCCGACGGTGGGGAATAAACAATGCG 1450
Query 1437 CCGGTAAGGATTTCGTTGTTTTGGTGGCGAGGTTGTTTGTGATTGAGATTTTCCGGCGAT 1496
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 CCGGTAAGGATTTTGTTGTTTTGGTGGCGAGGTTGTTTGTGATTGAGATTTTCCGGCGAT 1510
Query 1497 ATGATTCGTTTGATATTGAGGTTGCTAAGTCGCCGTTAGGAAGCTCCGTTAATTTCACGT 1556
|||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 1511 ATGATTCGTTTGATATTGAGGTTGGTACGTCGCCGTTAGGAAGCTCCGTTAATTTCTCGT 1570
Query 1557 CGTTAAGGAAAGCTAGCTTTTAGGAGCCAAGGGTAAATTTGTAATT 1602
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 CGTTAAGGAAAGCTAGCTTTTAGGAGCCAAGGGTAAATTTGTAATT 1616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79116058920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5