BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494803
Length=2326
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42270.1 | Symbols: VAR1, FTSH5 | FtsH extracellular proteas... 3465 0.0
AT1G50250.1 | Symbols: FTSH1 | FTSH protease 1 | chr1:18614209-... 1786 0.0
> AT5G42270.1 | Symbols: VAR1, FTSH5 | FtsH extracellular protease
family | chr5:16902486-16905294 FORWARD LENGTH=2480
Length=2480
Score = 3465 bits (1876), Expect = 0.0
Identities = 2163/2297 (94%), Gaps = 37/2297 (2%)
Strand=Plus/Plus
Query 1 GTAGACGAACCTCAAGCAATCACTCAAACTCATGACTTCTCTTTAATCCTCCTCCAAAAA 60
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1 GTAGACGAACCTGAAGCAATCACTCAAACTCAAGACTTCTCTTTAATCCTCCTCCCAAAA 60
Query 61 ATCTCAATTTGCAGAGAAACCTCCTTCAAATT-CAATTCAAAGATCCTTCC-TTTTTCAC 118
| || | ||||||| |||||||| |||| |||||||||| ||||||| ||||||||
Sbjct 61 A--TC----T-CAGAGAATCCTCCTTC-AATTCCAATTCAAAGCTCCTTCCTTTTTTCAC 112
Query 119 --CACT-TTCTTC---TTCAA-AATC-T---AAT----T-TTGATTCTTCAGAGAGCTTC 162
| || |||||| ||||| ||| | ||| | || |||||||||||||||||
Sbjct 113 ATCTCTCTTCTTCAAATTCAATCATCATAAAAATCGAATCTTTATTCTTCAGAGAGCTTC 172
Query 163 AATGGCGACCACATCTTCAAACCCATTACTACTTTCTTCAAATTTCCTCGGTTCTCAAAT 222
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 AATGGCGACCACATCATCAAACCCATTACTACTTTCTTCAAATTTCCTCGGTTCTCAAAT 232
Query 223 CATAATCTCAGCTCCAACACCAAAAACCACCACAAAGTCTCTTCCTTTCTCAGTCATCTC 282
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 233 TATAATCTCAGCTCCAACACCAAAAACCACCACAAAGTCTCTTCCTTTCTCAGTAATCTC 292
Query 283 TCGAAGAAGAT-----A---C-CAATCGGAGAAGCTAATGAAATCTTTGCCATCACAAGC 333
||||| ||||| | | ||||||||||||||||||||||| || |||||||||||
Sbjct 293 TCGAAAAAGATACCAAATTTCTCAATCGGAGAAGCTAATGAAATCGTTACCATCACAAGC 352
Query 334 TGCGTTAGCGGCTCTGTTGTTCTCATCTTCGTCTCCACAAGCTTTAGCGGTTAACGAACC 393
||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 353 TGCGTTAGCAGCTCTGTTGTTCTCATCTTCATCTCCACAAGCTTTAGCAGTTAACGAACC 412
Query 394 GGTTCAGCCGCCAGCTCCGACCATTACTGTTGAAGCTCAGTCACCAAATCTGTCGACGTT 453
||||| || ||||| || |||||||||| ||||||||| ||||||||||||||||| ||
Sbjct 413 AGTTCAACCACCAGCACCAACCATTACTGCTGAAGCTCAATCACCAAATCTGTCGACTTT 472
Query 454 TGGTCAGAACGTTTTGATGACAGCACCGAATCCACAAGCTCAATCATCGGATCTTCCTGA 513
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 473 TGGTCAAAACGTTTTGATGACAGCACCGAATCCACAAGCTCAATCATCAGATCTTCCTGA 532
Query 514 TGGAACACAGTGGCGATACAGTGAGTTTCTAAATGCTGTGAAGAAAGGTAAAGTTGAGAG 573
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TGGAACACAATGGCGATACAGTGAGTTTCTAAATGCTGTGAAGAAAGGTAAAGTTGAGAG 592
Query 574 AGTGAAATTTAGTAAAGATGGTTCTGTTCTTCAGCTAACAGCTGTTGATAATCGTCGTGC 633
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 593 AGTGAAGTTTAGTAAAGATGGTTCTGTTCTTCAGTTAACAGCTGTTGATAATCGTCGTGC 652
Query 634 TACTGTTATTGTTCCTAATGATCCGGATTTGATTGATATCTTGGCGATGAATGGTGTCGA 693
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 653 TACTGTTATTGTTCCTAATGATCCTGATTTGATTGATATCTTGGCGATGAATGGTGTTGA 712
Query 694 TATATCGGTTTCGGAAGGAGAATCTGGAAATGGGTTGTTTGATTTCATTGGTAATTTGCT 753
|||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 713 TATATCTGTTTCTGAAGGAGAAGGTGGAAATGGGTTGTTTGATTTCATTGGTAATTTGCT 772
Query 754 TTTTCCTTTGTTGGCTTTTGGAGGGTTGTTTTATCTCTTTAGGGGAGGTCAGGGAGGTGC 813
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 773 TTTTCCTTTGTTGGCTTTTGGAGGGTTGTTTTATCTCTTTAGAGGAGGTCAAGGAGGTGC 832
Query 814 TGGTGGTCCTGGAGGTTTAGGAGGTCCTATGGATTTCGGAAGATCGAAATCGAAGTTTCA 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TGGTGGTCCTGGAGGTTTAGGAGGTCCTATGGATTTCGGAAGATCGAAATCGAAGTTTCA 892
Query 874 GGAAGTGCCGGAAACTGGGGTGACGTTTGGTGATGTTGCTGGAGCTGATCAAGCTAAGCT 933
||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 893 GGAAGTGCCTGAAACCGGTGTGACATTTGGTGATGTTGCTGGAGCTGATCAAGCTAAGCT 952
Query 934 TGAGTTACAAGAAGTTGTTGATTTCTTGAAGAATCCTGATAAGTATACTGCTTTAGGTGC 993
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 953 TGAGTTACAAGAAGTTGTTGATTTCTTGAAGAATCCTGATAAGTATACTGCGTTAGGTGC 1012
Query 994 TAAGATTCCTAAAGGGTGTTTGTTGGTTGGTCCACCGGGTACGGGGAAGACGCTTTTGGC 1053
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TAAGATTCCTAAAGGTTGTTTGTTGGTTGGTCCACCGGGTACGGGGAAGACGCTTTTGGC 1072
Query 1054 TAGAGCTGTGGCTGGAGAAGCAGGAGTGCCGTTCTTTTCGTGTGCTGCTTCGGAGTTTGT 1113
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TAGAGCTGTGGCTGGAGAAGCTGGAGTGCCGTTCTTTTCGTGTGCTGCTTCGGAGTTTGT 1132
Query 1114 GGAGCTTTTTGTTGGTGTGGGTGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAATC 1173
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1133 TGAGCTTTTTGTTGGTGTGGGTGCTTCTAGAGTTAGGGATTTATTTGAGAAGGCGAAATC 1192
Query 1174 GAAAGCTCCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGTAGGCAAAGAGGAGC 1233
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1193 GAAAGCTCCTTGTATTGTGTTTATTGATGAGATTGATGCTGTTGGTAGACAAAGAGGAGC 1252
Query 1234 TGGGATGGGTGGTGGAAATGATGAGAGAGAACAGACGATTAATCAGCTTTTGACTGAGAT 1293
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1253 TGGGATGGGTGGTGGAAATGATGAGAGGGAACAGACTATTAATCAGCTTTTGACTGAGAT 1312
Query 1294 GGATGGGTTTTCTGGTAATTCTGGTGTCATTGTGTTGGCTGCAACCAATAGACCGGATGT 1353
|||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 1313 GGATGGGTTTTCTGGTAACTCTGGTGTCATTGTGTTGGCTGCCACTAATAGACCGGATGT 1372
Query 1354 TCTTGACTCCGCATTGCTGAGACCTGGTAGATTTGACCGGCAAGTCACAGTGGATAGGCC 1413
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TCTTGACTCCGCGTTGCTGAGACCTGGTAGATTTGACCGGCAAGTCACAGTGGATAGGCC 1432
Query 1414 TGATGTAGCTGGAAGAG-TCAAGATCCTGCAGGTGCATTCTAGAGGGAAGGCTATTGGGA 1472
||||||||| ||||||| || ||||||| |||||||||||||||| || ||||||||||
Sbjct 1433 TGATGTAGCCGGAAGAGTTC-AGATCCTTAAGGTGCATTCTAGAGGAAAAGCTATTGGGA 1491
Query 1473 AGGATGTGGATTATGAGAAAGTTGCGAGGAGAACTCCGGGTTTCACTGGTGCTGATTTAC 1532
||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1492 AGGATGTTGATTACGAAAAAGTTGCGAGGAGAACTCCGGGTTTCACTGGTGCTGATTTGC 1551
Query 1533 AGAACCTGATGAATGAAGCTGCGATTCTTGCGGCTAGACGTGAGCTTAAGGAGATAAGCA 1592
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1552 AGAACCTGATGAATGAAGCTGCGATTCTTGCTGCTAGACGTGAGCTTAAGGAGATAAGCA 1611
Query 1593 AGGATGAAATATCCGATGCTCTTGAGAGGATCATTGCTGGACCGGAGAAGAAGAATGCTG 1652
||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 1612 AGGATGAAATATCTGATGCTCTTGAGAGGATCATTGCTGGACCTGAAAAGAAGAACGCTG 1671
Query 1653 TTGTCTCAGAGGAGAAGAAGAGACTTGTTGCTTATCATGAGGCTGGGCATGCTTTAGTTG 1712
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1672 TTGTCTCTGAGGAGAAGAAAAGACTTGTTGCTTACCATGAGGCTGGGCATGCTTTAGTTG 1731
Query 1713 GTGCACTTATGCCGGAGTACGATCCAGTGGCCAAGATATCGATTATTCCACGTGGTCAAG 1772
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1732 GTGCACTTATGCCGGAGTATGATCCAGTGGCCAAGATATCGATTATTCCACGTGGCCAAG 1791
Query 1773 CTGGTGGGCTCACCTTTTTCGCCCCTAGCGAAGAGAGACTTGAGTCTGGATTGTATAGCA 1832
|||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||
Sbjct 1792 CTGGTGGGCTCACCTTTTTCGCTCCTAGCGAAGAGAGGCTAGAGTCCGGATTGTATAGCA 1851
Query 1833 GAAGCTACCTTGAGAATCAAATGGCTGTTGCACTTGGTGGAAGGGTTGCAGAAGAGGTGA 1892
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 GAAGCTACCTTGAGAACCAAATGGCTGTTGCACTTGGTGGAAGGGTTGCAGAAGAGGTGA 1911
Query 1893 TCTTTGGTGACGAGAATGTAACAACCGGAGCATCAAACGATTTCATGCAGGTGTCACGAG 1952
||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| || |
Sbjct 1912 TCTTTGGAGACGAGAATGTGACAACCGGAGCATCAAATGATTTCATGCAAGTGTCGCGGG 1971
Query 1953 TGGCTCGCCAAATGGTTGAGAGATTCGGGTTCAGCAAAAAGATTGGACAAGTTGCAGTTG 2012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 TGGCTCGCCAAATGGTTGAGAGATTCGGGTTCAGCAAAAAGATTGGACAAGTTGCAGTTG 2031
Query 2013 GTGGAGCAGGAGGAAACCCTTTCTTGGGTCAAAGTATGTCATCACAGAAGGATTACTCAA 2072
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2032 GTGGAGCAGGAGGAAACCCTTTCTTGGGTCAAAGTATGTCATCGCAGAAGGATTACTCGA 2091
Query 2073 TGGCAACAGCGGATGTGGTTGATGCCGAAGTGAGAGAGCTGGTAGAGAAGGCGTACGTGA 2132
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 2092 TGGCAACAGCGGATGTGGTTGATGCGGAAGTGAGAGAGCTCGTTGAGAAGGCGTACGTGA 2151
Query 2133 GGGCGAAAGAGATCATAACAACACAAATTGATATCTTACACAAGCTTGCGCAGCTCCTAA 2192
| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 2152 GAGCGAAAGAGATCATAACAACACAAATTGATATCCTACACAAGCTTGCACAGCTCCTTA 2211
Query 2193 TTGAGAAAGAAACTGTGGATGGAGAAGAGTTCATGAGCCTTTTCATTGACGGACAAGCTG 2252
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2212 TTGAGAAAGAAACTGTGGATGGAGAAGAGTTCATGAGTCTTTTCATTGACGGACAAGCCG 2271
Query 2253 AGTTGTATGTTTCTTAA 2269
|||| ||||||||||||
Sbjct 2272 AGTTATATGTTTCTTAA 2288
> AT1G50250.1 | Symbols: FTSH1 | FTSH protease 1 | chr1:18614209-18617063
REVERSE LENGTH=2473
Length=2473
Score = 1786 bits (967), Expect = 0.0
Identities = 1526/1797 (85%), Gaps = 34/1797 (2%)
Strand=Plus/Plus
Query 495 AATCATCGGATCTTCCTGATGGAACACAGTGGCGATACAGTGAGTTTCTAAATGCTGTGA 554
||||||||||||| || || ||| |||||||||||||||| |||||||| || |||||||
Sbjct 504 AATCATCGGATCTCCCAGAAGGATCACAGTGGCGATACAGCGAGTTTCTTAACGCTGTGA 563
Query 555 AGAAAGGTAAAGTTGAGAGAGTGAAATTTAGTAAAGATGGTTCTGTTCTTCAGCTAACAG 614
||||||| ||||| |||||||| | ||| || ||||||||||||||| ||||||| || |
Sbjct 564 AGAAAGGGAAAGTCGAGAGAGTTAGATTCAGCAAAGATGGTTCTGTTGTTCAGCTTACTG 623
Query 615 CTGTTGATAATCGTCGTGCTACTGTTATTGTTCCTAATGATCCGGA-TTTGATTGATATC 673
| || || ||||| |||||| | || || || ||||| || || || || |||||||||
Sbjct 624 CCGTCGACAATCGCCGTGCTTCAGTCATCGTCCCTAACGACCCTGACCTT-ATTGATATC 682
Query 674 TTGGCGATGAATGGTGTCGATATATCGGTTTCGGAAGGAGAAT-CT--GGAAATGGGTTG 730
||||| ||||| || || |||||||| || || |||||||||| || || |||| |||
Sbjct 683 TTGGCTATGAACGGAGTTGATATATCCGTCTCTGAAGGAGAATCCTCAGGCAATGACTTG 742
Query 731 TTTGA-TTTCATTGGTAATTTGCTTTTTCC-TTTGTTGGCTTTTGGAGGGTTGTT-TTAT 787
|| | | ||||||| || ||| |||| || || ||||| ||||| || | || ||
Sbjct 743 -TTCACTGTCATTGGAAACTTGATTTTCCCGCTT-TTGGCCTTTGGTGGACTCTTCTT-G 799
Query 788 CTCTTT-AGGGGAGGTCAGGGAGG---TGCTGGTGGTCCTGGAGGTTTAGGAGGTCCTAT 843
|| ||| ||| ||| ||||||||| || |||||||||||| || || || ||||||||
Sbjct 800 CT-TTTCAGGCGAGCTCAGGGAGGCCCTGGTGGTGGTCCTGGTGGCTTGGGTGGTCCTAT 858
Query 844 GGATTTCGGAAGATCGAAATCGAAGTTTCAGGAAGTGCCGGAAACTGGGGTGA-CGTTTG 902
|||||||||| | || ||||| ||||| ||||||||||| || ||||| || | | ||||
Sbjct 859 GGATTTCGGACGTTCTAAATCCAAGTTCCAGGAAGTGCCTGAGACTGGTGT-ATCATTTG 917
Query 903 GTGATGTTGCTGGAGCTGATCAAGCTAAGCTT-GAGTTACAAGAAGTTGTTGATTTCTTG 961
||||||||||| ||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct 918 CAGATGTTGCTGGGGCTGATCAAGCTAAG-TTGGAGTTACAGGAAGTTGTGGATTTCTTG 976
Query 962 AAGAATCCTGATAAGTATACTGCTTTAGGTGCTAAGATTCCTAAAGGGTGTTTG-TTGGT 1020
||||||||||||||||| || || || ||||||||||||||||||||||||||| || ||
Sbjct 977 AAGAATCCTGATAAGTACACAGCCTTGGGTGCTAAGATTCCTAAAGGGTGTTTGCTT-GT 1035
Query 1021 TGGTCCACCGGGTACGGGGAAGACGCTTTTGGCTAGAGCTGTGGCTGGAGAAGCAGGAGT 1080
||| || || |||||||| ||||| || ||||||| || |||||||| ||||| |||||
Sbjct 1036 TGGACCGCCTGGTACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAAGCTGGAGT 1095
Query 1081 GCCGTTCTTTTCGTGTGCTGCTTCGGAGTTTGTGGAGCTTTTTGTTGGTGTGGGTGCTTC 1140
||||||||| || || || || |||||||| || ||||||||||| ||||||||||| ||
Sbjct 1096 GCCGTTCTTCTCTTGCGCGGCCTCGGAGTTCGTAGAGCTTTTTGTGGGTGTGGGTGCATC 1155
Query 1141 TAGAGTTAGGGATTTGTTTGAGAAGGCGAAATCGAAAGCTCCTTGTATTGTGTTTATTGA 1200
||||||||||||||||| |||||||| || || ||||| ||||||||||| || |||||
Sbjct 1156 GAGAGTTAGGGATTTGTTCGAGAAGGCTAAGTCTAAAGCCCCTTGTATTGTATTCATTGA 1215
Query 1201 TGAGATTGATGCTGTGGGTAGGCAAAGAGGAGCTGGGATGGGTGGTGGAAATGATGAGAG 1260
||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 1216 TGAGATTGACGCTGTGGGTAGGCAGAGAGGAGCTGGGATGGGAGGAGGAAATGATGAGAG 1275
Query 1261 AGAACAGACGATTAATCAGCTTTTGACTGAGATGGATGGGTTTTCTGGTAATTCTGGTGT 1320
||||||||| ||||||||||| ||||| ||||||||||| |||||||| || ||||||||
Sbjct 1276 AGAACAGACTATTAATCAGCTGTTGACAGAGATGGATGGATTTTCTGGCAACTCTGGTGT 1335
Query 1321 CATTGTGTTGGCTGCAACCAATAGACCGGATGTTCTTGACTCCGCATTGCTGAGACCTGG 1380
|| || ||||| || || ||||| ||||| |||||||| || || ||| |||| |||||
Sbjct 1336 GATAGTTTTGGCAGCTACGAATAGGCCGGACGTTCTTGATTCGGCTTTGTTGAGGCCTGG 1395
Query 1381 TAGATTTGACCGGCAAGTCACAGTGGATAGGCCTGATGTAGCTGGAAGAGTCAAGATCCT 1440
|| ||||| || || ||||| ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1396 AAGGTTTGATCGACAGGTCACGGTGGATAGGCCTGATGTGGCTGGCAGAGTCAAGATTCT 1455
Query 1441 GCAGGTGCATTCTAGAGGGAAGGCTA-TTGGGAAGGATGTGGA-TTATGAGAAAGTTGCG 1498
||||| |||||||| |||||||| | | || || |||||||| || ||| || |||||
Sbjct 1456 TCAGGTTCATTCTAGGGGGAAGGC-ACTCGGTAAAGATGTGGACTT-TGACAAGGTTGCC 1513
Query 1499 AGGAGAACTCCGGGTTTCACTGGTGCTGATTTACAGAACCTGATGAATGAAGCTGCGATT 1558
|| || || || |||||||| |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1514 AGAAGGACCCCTGGTTTCACGGGTGCTGACTTACAAAACCTGATGAATGAAGCGGCGATT 1573
Query 1559 CTTGCGGCTAGACGTGAGCTTAAGGAGATAAGCAAGGATGAAATATCCGATGCTCTTGAG 1618
||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 1574 CTTGCGGCTAGGCGTGAGCTTAAGGAAATAAGCAAGGATGAAATCTCTGATGCTCTTGAG 1633
Query 1619 AGGATCATTGCTGGACCGGAGAAGAAGAATGCTGTTGTCTCAGAGGAGAAGAAGAGACTT 1678
||||||||||||||||| |||||||||||||| |||||||| || |||||||||||||||
Sbjct 1634 AGGATCATTGCTGGACCTGAGAAGAAGAATGCAGTTGTCTCTGAAGAGAAGAAGAGACTT 1693
Query 1679 GTTGCTTATCATGAGGCTGGGCATGCTTTAGTTGGTGCACTTATGCCGGAGTACGATCCA 1738
||||| || ||||||||||| |||||| |||| ||||| |||||||| || || |||||
Sbjct 1694 GTTGCATACCATGAGGCTGGTCATGCTCTAGTGGGTGCTCTTATGCCAGAATATGATCCG 1753
Query 1739 GTGGCCAAGATATCGATTATTCCACGTGGTCAAGCTGGTGGGCTCACCTTTTTCGCCCCT 1798
|| || ||||| || || ||||| ||||| ||||||||||||||||| ||||| || ||
Sbjct 1754 GTTGCAAAGATTTCTATCATTCCTCGTGGCCAAGCTGGTGGGCTCACTTTTTTTGCTCCA 1813
Query 1799 AGCGAAGAGAGACTTGAGTCTGGATTGTATAGCAGAAGCTACCTTGAGAATCAAATGGCT 1858
|||||||| |||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 1814 AGCGAAGAAAGACTTGAGTCTGGATTGTACAGTAGGAGCTACCTTGAGAATCAAATGGCT 1873
Query 1859 GTTGCACTTGGTGGAAGGGTTGCAGAAGAGGTGATCTTTGGTGACGAGAATGTAACAACC 1918
||||||||||| |||||||||||||| |||||||||||||| || |||||||| || ||
Sbjct 1874 GTTGCACTTGGCGGAAGGGTTGCAGAGGAGGTGATCTTTGGGGATGAGAATGTGACGACT 1933
Query 1919 GGAGCATCAAACGATTTCATGCAGGTGTCACGAGTGGCTCGCCAAATGGTTGAGAGATTC 1978
||||||||||| ||||||||||||||||| || ||||| || |||||| ||||||||||
Sbjct 1934 GGAGCATCAAATGATTTCATGCAGGTGTCTCGTGTGGCACGTCAAATGATTGAGAGATTT 1993
Query 1979 GGGTTCAGCAAAAAGATTGGACAAGTTGCAGTTGGTGGAGCAGGAGGAAA-CCCTTTCTT 2037
||||||||||||||||||||||||||||| |||||||| | || ||||| ||||| | |
Sbjct 1994 GGGTTCAGCAAAAAGATTGGACAAGTTGCTGTTGGTGGCCCTGGTGGAAATCCCTT-CAT 2052
Query 2038 GGGTCAA-AGTATGTCATCACAGAAGGATTACTCAATGGCAACAGCGGATGTGGTTGATG 2096
||||||| | |||||||||||||| ||||||||||||||||| |||||| | || ||||
Sbjct 2053 GGGTCAACAA-ATGTCATCACAGAAAGATTACTCAATGGCAACTGCGGATATTGTAGATG 2111
Query 2097 CCGAAGTGAGAGAGCTGGTAGAGAAGGCGTACGTGAGGGCGAAAG-AGATCATAACAACA 2155
| || ||| ||||| | || |||||||| ||| ||| || || | |||||||||||||
Sbjct 2112 CTGAGGTGCGAGAGTTAGTTGAGAAGGCATACAAGAGAGC-AACGGAGATCATAACAACT 2170
Query 2156 CAAATTGATATCTTACACAAGCTTGCGCAGCTCCTAATTGAGAAAGAAACTGTGGATGGA 2215
|| ||||||||| ||||||||||||| |||||||| || |||||||||||||| || ||
Sbjct 2171 CATATTGATATCCTACACAAGCTTGCACAGCTCCTGATCGAGAAAGAAACTGTTGACGGT 2230
Query 2216 GAAGAGTTCATGAGCCT-TTTCATTGACGGACAAGCTGAGTTGTATGTTTCTTAATT 2271
|||||||||||||| || ||| |||||||| ||||||||||||||| |||||| |||
Sbjct 2231 GAAGAGTTCATGAGTCTCTTT-ATTGACGGCCAAGCTGAGTTGTATATTTCTTGATT 2286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115461253500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5