BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494872
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48180.1 | Symbols: NSP5 | nitrile specifier protein 5 | chr... 1639 0.0
> AT5G48180.1 | Symbols: NSP5 | nitrile specifier protein 5 | chr5:19540937-19542426
REVERSE LENGTH=1395
Length=1395
Score = 1639 bits (887), Expect = 0.0
Identities = 1121/1227 (91%), Gaps = 43/1227 (4%)
Strand=Plus/Plus
Query 1 AACAACAACCACAAAACTTTTTTCTTTCATTCTCT-AAAAATAATCTTTCTGGTGAGTAA 59
||||| | |||||||||||||||||||||| |||| ||||| ||||||||||||||||||
Sbjct 1 AACAATAGCCACAAAACTTTTTTCTTTCATCCTCTAAAAAAAAATCTTTCTGGTGAGTAA 60
Query 60 CGaaaaaaaaaaaaTGTGTCCGGTGGAGAACAAATGGGTT-AAGGTGGGTCAAAAAGGAG 118
|| |||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 61 CG-----AAAAAAATGTGTCCGGTGGAGAACAAAT-GGTTAAAGGTGGGTCAAAAAGGAG 114
Query 119 CTGGTCCTGGGGCTAGAAGCTCACATGCCATGACCGTCGTTGGTAACAAAGTTTACTGTT 178
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 115 CTGGTCCTGGGGCTAGAAGCTCACATGCCATGACCGTCGTTGGGAACAAAGTTTACTGTT 174
Query 179 TTGGCGGTGAGCTTAAGCCAACGATCCATATTGACAACGATCTTTACGTTTTCGATCTTG 238
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 175 TTGGTGGTGAGCTTAAGCCAACGATCCATATTGATAACGATCTTTACGTTTTCGATCTTG 234
Query 239 AGACTCAAGAATGGTCGATAGCTCCTGCGACCGGAGACGCTCCTTTCCCCTGTTTTGGTG 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 235 AGACTCAAGAATGGTCGATAGCTCCTGCGACCGGAGAGGCTCCTTTCCCCTGTTTTGGTG 294
Query 299 TCTCGATGGTCACGATCGGTTCAACGATCTATGTCTACGGTGGCCGTGACGATAAAAGGA 358
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 295 TCTCGATGGTAACGATCGGTTCAACGATCTATGTCTACGGTGGCCGTGACGATAAACGGA 354
Query 359 GGTACAACGGTCTTTATTCGTTTGAAACTGAGACTAATGAGTGGAAATTGTTGTCTCCGG 418
| |||||||||||| |||||| ||| |||||||| |||||||||||||||||| |||| |
Sbjct 355 GATACAACGGTCTTCATTCGTATGATACTGAGACCAATGAGTGGAAATTGTTGGCTCCTG 414
Query 419 TTGAGGAAGGGCTTCCGGGTCGTAGCTATCATTCAATGGCTGGTGATGATCGGAAAGTTT 478
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TTGAGGAAGGGCTTCCTGGTCGTAGCTATCATTCAATGGCTGGTGATGATCGGAAAGTTT 474
Query 479 ATGTCTTTGGTGGTGTTACTGCTAAAGGACGTGTGAATACGCTTCATGCGTACGATGTTG 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 ATGTGTTTGGTGGTGTTACTGCTAAAGGACGTGTGAATACGCTTCATGCGTACGATGTTG 534
Query 539 TTGATCGGAAATGGGTTGAGTATCCGGCGGCTGGGGAAGCTTGTAAAGGCAGAGGAGCAC 598
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TTGATCAGAAATGGGTTGAGTATCCGGCGGCTGGGGAAGCTTGTAAAGGCAGAGGAGCAC 594
Query 599 C-GGGACTTGTGGTTGTGGAAGGGAAAATATGGGTTTTGTTTGGGTTTGATGGTAATGAA 657
| ||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 595 CAGGG-CTTGTGGTTGTGGAAGGGAGAATTTGGGTTTTGTTTGGGTTTGATGGTAATGAA 653
Query 658 TTGGGTGATATTCATTGTTTTGATTTGGCTAGTGAGCAATGGAAAGCTGTGGAGACTACC 717
||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||
Sbjct 654 TTGGGTGATATTCATTGTTTTGACTTGGCTAGTGAACAGTGGAAGGCTGTGGAGACTACC 713
Query 718 GGAGATGTACCGCCGGCGAGAAGCGTGTTTCCGGCGGTTTCGTATGGGAAATACATTGTT 777
|| ||||||||| |||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 714 GGGGATGTACCGGCGGCGAGAAGCGTGTTTCCGGCGGTTTCTTACGGGAAGTACATTGTT 773
Query 778 ATTTATGGTGGGGAGGAAGAGCCACATGAG-TTGATGCATATGGGAGCTGGGAA-ATTGA 835
||||||||||||||||||||||| |||||| || ||||| |||||||||||||| || |
Sbjct 774 ATTTATGGTGGGGAGGAAGAGCCGCATGAGCTT-ATGCACATGGGAGCTGGGAAGAT-GT 831
Query 836 CTGGAGAAGTTTA-CAAGCTTGATACAGAGACATTAGTGTGGGAGAAGATTGTG-GATGT 893
||||||| ||||| || ||||||||||||||| ||||||||||||| ||||||| | |
Sbjct 832 CTGGAGAGGTTTATCA-GCTTGATACAGAGACGTTAGTGTGGGAGAGGATTGTGTGCGG- 889
Query 894 GAACGAGGAGGAGAAGCCTAGTCCA-CGCGGGTGGTGTGCGTTTGCGGCTGCGGTTAAGG 952
||| || ||||||||||| || ||| || |||||||| |||||| || ||||||||||
Sbjct 890 GAATGAAGAGGAGAAGCCGAG-CCAACGTGGGTGGTGCGCGTTTACGAAAGCGGTTAAGG 948
Query 953 ATGGTGAGGAAGGTCTGTTGGTTCATGGTGGTAATAGTCCGACCAACGAGAGGCTTGATG 1012
|||||||||||||| |||||||||||||||| ||| ||||||||| ||| |||||||||
Sbjct 949 ATGGTGAGGAAGGTTTGTTGGTTCATGGTGGGAATTCTCCGACCAATGAGCGGCTTGATG 1008
Query 1013 ATTTGGTGTTTTGGGGTTTCTCTCGTCTTAATGTCAATTAATGAGT---TACTTTGTGTC 1069
|||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||
Sbjct 1009 ATTTGGTGTTTTGGGGTTTCTCTCATCTTAATGTCAATTAATGACTAGCTGCTTTGTGTC 1068
Query 1070 TTTCGTTTGTAAACTGCTTAGTGTGTGTATGTGTTGTTTTAAGGAGTTTATGTGGTGATG 1129
|||||||| |||| || ||||||||| | || | ||||||||||||||| |||||||||
Sbjct 1069 TTTCGTTTATAAAGTGTTTAGTGTGT-T--GT-T-GTTTTAAGGAGTTTAAGTGGTGATG 1123
Query 1130 ATATGTAACTGCTAAGTGTCTG-----A-G---CTATGTG-G-TGACAA-TTTG-TCACC 1176
|||||||||||||||||||||| | | ||||||| | ||| || |||| | |||
Sbjct 1124 ATATGTAACTGCTAAGTGTCTGTGTTTAAGGAGCTATGTGTGGTGA-AACTTTGCT-ACC 1181
Query 1177 TATTCCAAATATTTTATCAAGTTTGGT 1203
||||||||||| ||||| |||||||||
Sbjct 1182 TATTCCAAATAGTTTATTAAGTTTGGT 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60843060540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5